Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17595

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS17605 and HMPREF1058_RS17600 are separated by 132 nucleotidesHMPREF1058_RS17600 and HMPREF1058_RS17595 are separated by 191 nucleotidesHMPREF1058_RS17595 and HMPREF1058_RS17590 are separated by 24 nucleotides HMPREF1058_RS17605: HMPREF1058_RS17605 - DedA family protein, at 388,944 to 389,588 _RS17605 HMPREF1058_RS17600: HMPREF1058_RS17600 - hypothetical protein, at 389,721 to 390,146 _RS17600 HMPREF1058_RS17595: HMPREF1058_RS17595 - Lrp/AsnC family transcriptional regulator, at 390,338 to 390,808 _RS17595 HMPREF1058_RS17590: HMPREF1058_RS17590 - magnesium/cobalt transporter CorA, at 390,833 to 391,873 _RS17590 Position (kb) 390 391Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 389.382 kb on - strand, within HMPREF1058_RS17605at 389.385 kb on - strand, within HMPREF1058_RS17605at 389.495 kb on + strand, within HMPREF1058_RS17605at 389.509 kb on + strand, within HMPREF1058_RS17605at 389.519 kb on + strand, within HMPREF1058_RS17605at 389.537 kb on + strandat 389.538 kb on - strandat 389.538 kb on - strandat 389.547 kb on - strandat 389.567 kb on + strandat 389.591 kb on + strandat 389.591 kb on + strandat 389.592 kb on - strandat 389.592 kb on - strandat 389.594 kb on - strandat 389.594 kb on - strandat 389.600 kb on + strandat 389.603 kb on + strandat 389.604 kb on - strandat 389.608 kb on + strandat 389.609 kb on - strandat 389.611 kb on - strandat 389.681 kb on - strandat 389.681 kb on - strandat 389.718 kb on - strandat 389.750 kb on + strandat 389.752 kb on + strandat 389.753 kb on - strandat 389.775 kb on - strand, within HMPREF1058_RS17600at 389.780 kb on - strand, within HMPREF1058_RS17600at 389.786 kb on + strand, within HMPREF1058_RS17600at 389.919 kb on - strand, within HMPREF1058_RS17600at 389.945 kb on - strand, within HMPREF1058_RS17600at 389.968 kb on - strand, within HMPREF1058_RS17600at 389.993 kb on + strand, within HMPREF1058_RS17600at 389.994 kb on - strand, within HMPREF1058_RS17600at 390.008 kb on + strand, within HMPREF1058_RS17600at 390.106 kb on - strandat 390.106 kb on - strandat 390.119 kb on + strandat 390.120 kb on - strandat 390.122 kb on - strandat 390.130 kb on + strandat 390.131 kb on - strandat 390.131 kb on - strandat 390.132 kb on + strandat 390.132 kb on + strandat 390.132 kb on + strandat 390.135 kb on - strandat 390.135 kb on - strandat 390.135 kb on - strandat 390.137 kb on - strandat 390.137 kb on - strandat 390.146 kb on + strandat 390.228 kb on + strandat 390.228 kb on + strandat 390.239 kb on + strandat 390.239 kb on + strandat 390.240 kb on - strandat 390.267 kb on + strandat 390.283 kb on + strandat 390.284 kb on - strandat 390.284 kb on - strandat 390.308 kb on - strandat 390.333 kb on - strandat 390.343 kb on + strandat 390.382 kb on - strandat 390.386 kb on - strand, within HMPREF1058_RS17595at 390.386 kb on - strand, within HMPREF1058_RS17595at 390.491 kb on + strand, within HMPREF1058_RS17595at 390.491 kb on + strand, within HMPREF1058_RS17595at 390.492 kb on - strand, within HMPREF1058_RS17595at 390.567 kb on + strand, within HMPREF1058_RS17595at 390.609 kb on + strand, within HMPREF1058_RS17595at 390.630 kb on + strand, within HMPREF1058_RS17595at 390.641 kb on + strand, within HMPREF1058_RS17595at 390.642 kb on - strand, within HMPREF1058_RS17595at 390.642 kb on - strand, within HMPREF1058_RS17595at 390.666 kb on - strand, within HMPREF1058_RS17595at 390.678 kb on + strand, within HMPREF1058_RS17595at 390.698 kb on + strand, within HMPREF1058_RS17595at 390.699 kb on - strand, within HMPREF1058_RS17595at 390.806 kb on + strandat 390.811 kb on - strandat 390.853 kb on + strandat 390.864 kb on + strandat 390.865 kb on - strandat 390.869 kb on - strandat 390.869 kb on - strandat 390.882 kb on - strandat 390.905 kb on + strandat 390.906 kb on - strandat 390.906 kb on - strandat 390.909 kb on + strandat 390.910 kb on - strandat 390.989 kb on + strand, within HMPREF1058_RS17590at 390.990 kb on - strand, within HMPREF1058_RS17590at 390.992 kb on - strand, within HMPREF1058_RS17590at 390.994 kb on + strand, within HMPREF1058_RS17590at 390.995 kb on - strand, within HMPREF1058_RS17590at 391.053 kb on + strand, within HMPREF1058_RS17590at 391.053 kb on + strand, within HMPREF1058_RS17590at 391.054 kb on - strand, within HMPREF1058_RS17590at 391.057 kb on + strand, within HMPREF1058_RS17590at 391.061 kb on + strand, within HMPREF1058_RS17590at 391.095 kb on - strand, within HMPREF1058_RS17590at 391.220 kb on - strand, within HMPREF1058_RS17590at 391.354 kb on + strand, within HMPREF1058_RS17590at 391.355 kb on - strand, within HMPREF1058_RS17590at 391.355 kb on - strand, within HMPREF1058_RS17590at 391.448 kb on + strand, within HMPREF1058_RS17590at 391.448 kb on + strand, within HMPREF1058_RS17590at 391.513 kb on + strand, within HMPREF1058_RS17590at 391.513 kb on + strand, within HMPREF1058_RS17590at 391.534 kb on - strand, within HMPREF1058_RS17590at 391.577 kb on - strand, within HMPREF1058_RS17590at 391.577 kb on - strand, within HMPREF1058_RS17590at 391.578 kb on + strand, within HMPREF1058_RS17590at 391.579 kb on - strand, within HMPREF1058_RS17590at 391.582 kb on + strand, within HMPREF1058_RS17590at 391.582 kb on + strand, within HMPREF1058_RS17590at 391.582 kb on + strand, within HMPREF1058_RS17590at 391.601 kb on - strand, within HMPREF1058_RS17590at 391.631 kb on + strand, within HMPREF1058_RS17590at 391.632 kb on - strand, within HMPREF1058_RS17590at 391.673 kb on + strand, within HMPREF1058_RS17590at 391.673 kb on + strand, within HMPREF1058_RS17590at 391.674 kb on - strand, within HMPREF1058_RS17590at 391.715 kb on + strand, within HMPREF1058_RS17590at 391.734 kb on + strand, within HMPREF1058_RS17590at 391.747 kb on + strand, within HMPREF1058_RS17590at 391.777 kb on + strandat 391.777 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7
remove
389,382 - HMPREF1058_RS17605 0.68 +1.5
389,385 - HMPREF1058_RS17605 0.68 -1.6
389,495 + HMPREF1058_RS17605 0.85 +0.2
389,509 + HMPREF1058_RS17605 0.88 +0.9
389,519 + HMPREF1058_RS17605 0.89 -1.3
389,537 + +0.6
389,538 - +1.0
389,538 - +0.1
389,547 - +1.4
389,567 + -0.9
389,591 + +0.8
389,591 + +1.4
389,592 - +0.1
389,592 - -0.9
389,594 - -2.2
389,594 - +0.8
389,600 + +0.9
389,603 + -0.4
389,604 - -1.7
389,608 + -0.8
389,609 - -0.8
389,611 - -1.1
389,681 - +1.8
389,681 - -0.7
389,718 - +0.0
389,750 + -0.9
389,752 + +1.1
389,753 - -0.9
389,775 - HMPREF1058_RS17600 0.13 +0.2
389,780 - HMPREF1058_RS17600 0.14 -1.6
389,786 + HMPREF1058_RS17600 0.15 -1.6
389,919 - HMPREF1058_RS17600 0.46 +0.3
389,945 - HMPREF1058_RS17600 0.53 -1.2
389,968 - HMPREF1058_RS17600 0.58 +0.5
389,993 + HMPREF1058_RS17600 0.64 +0.7
389,994 - HMPREF1058_RS17600 0.64 -1.7
390,008 + HMPREF1058_RS17600 0.67 +1.1
390,106 - +0.6
390,106 - +0.0
390,119 + +0.6
390,120 - -1.7
390,122 - +2.3
390,130 + +0.9
390,131 - +2.7
390,131 - -2.4
390,132 + +0.3
390,132 + +0.6
390,132 + -0.4
390,135 - +0.7
390,135 - +0.6
390,135 - +0.1
390,137 - -0.1
390,137 - +0.6
390,146 + +0.4
390,228 + -0.1
390,228 + -0.9
390,239 + +1.1
390,239 + -0.2
390,240 - -2.4
390,267 + -1.3
390,283 + +0.4
390,284 - -0.4
390,284 - +2.2
390,308 - -0.3
390,333 - -0.1
390,343 + -1.9
390,382 - +0.5
390,386 - HMPREF1058_RS17595 0.10 -0.4
390,386 - HMPREF1058_RS17595 0.10 +0.8
390,491 + HMPREF1058_RS17595 0.32 +0.3
390,491 + HMPREF1058_RS17595 0.32 -0.6
390,492 - HMPREF1058_RS17595 0.33 -1.0
390,567 + HMPREF1058_RS17595 0.49 -3.4
390,609 + HMPREF1058_RS17595 0.58 -2.0
390,630 + HMPREF1058_RS17595 0.62 +3.5
390,641 + HMPREF1058_RS17595 0.64 +6.3
390,642 - HMPREF1058_RS17595 0.65 +1.8
390,642 - HMPREF1058_RS17595 0.65 +2.6
390,666 - HMPREF1058_RS17595 0.70 +0.3
390,678 + HMPREF1058_RS17595 0.72 +2.3
390,698 + HMPREF1058_RS17595 0.76 -2.7
390,699 - HMPREF1058_RS17595 0.77 +1.0
390,806 + +1.3
390,811 - +0.3
390,853 + +1.4
390,864 + +0.5
390,865 - -1.0
390,869 - -1.6
390,869 - -2.6
390,882 - -0.4
390,905 + +0.2
390,906 - -0.4
390,906 - -0.2
390,909 + +2.2
390,910 - +1.1
390,989 + HMPREF1058_RS17590 0.15 +1.8
390,990 - HMPREF1058_RS17590 0.15 +0.0
390,992 - HMPREF1058_RS17590 0.15 +0.0
390,994 + HMPREF1058_RS17590 0.15 +2.8
390,995 - HMPREF1058_RS17590 0.16 -1.0
391,053 + HMPREF1058_RS17590 0.21 -1.0
391,053 + HMPREF1058_RS17590 0.21 -1.7
391,054 - HMPREF1058_RS17590 0.21 +1.6
391,057 + HMPREF1058_RS17590 0.22 -1.0
391,061 + HMPREF1058_RS17590 0.22 +0.2
391,095 - HMPREF1058_RS17590 0.25 -0.9
391,220 - HMPREF1058_RS17590 0.37 +1.5
391,354 + HMPREF1058_RS17590 0.50 -2.4
391,355 - HMPREF1058_RS17590 0.50 -0.1
391,355 - HMPREF1058_RS17590 0.50 -0.3
391,448 + HMPREF1058_RS17590 0.59 +1.3
391,448 + HMPREF1058_RS17590 0.59 -2.6
391,513 + HMPREF1058_RS17590 0.65 -1.4
391,513 + HMPREF1058_RS17590 0.65 -1.6
391,534 - HMPREF1058_RS17590 0.67 +2.1
391,577 - HMPREF1058_RS17590 0.71 -4.3
391,577 - HMPREF1058_RS17590 0.71 -0.4
391,578 + HMPREF1058_RS17590 0.72 -1.4
391,579 - HMPREF1058_RS17590 0.72 +0.2
391,582 + HMPREF1058_RS17590 0.72 -3.2
391,582 + HMPREF1058_RS17590 0.72 +0.1
391,582 + HMPREF1058_RS17590 0.72 -0.1
391,601 - HMPREF1058_RS17590 0.74 +1.1
391,631 + HMPREF1058_RS17590 0.77 -2.0
391,632 - HMPREF1058_RS17590 0.77 -0.4
391,673 + HMPREF1058_RS17590 0.81 -1.5
391,673 + HMPREF1058_RS17590 0.81 +0.0
391,674 - HMPREF1058_RS17590 0.81 -0.6
391,715 + HMPREF1058_RS17590 0.85 +0.6
391,734 + HMPREF1058_RS17590 0.87 -2.0
391,747 + HMPREF1058_RS17590 0.88 +1.1
391,777 + +0.9
391,777 + +0.6

Or see this region's nucleotide sequence