Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10565 and HMPREF1058_RS10560 are separated by 374 nucleotides HMPREF1058_RS10560 and HMPREF1058_RS10555 are separated by 73 nucleotides
HMPREF1058_RS10565: HMPREF1058_RS10565 - cysteine--tRNA ligase, at 625,253 to 626,734
_RS10565
HMPREF1058_RS10560: HMPREF1058_RS10560 - arabinan endo-1,5-alpha-L-arabinosidase, at 627,109 to 628,992
_RS10560
HMPREF1058_RS10555: HMPREF1058_RS10555 - bacterial Ig-like domain-containing protein, at 629,066 to 630,844
_RS10555
Position (kb) 627
628
629 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 626.735 kb on - strand at 626.769 kb on - strand at 626.778 kb on - strand at 626.789 kb on - strand at 626.865 kb on - strand at 626.873 kb on - strand at 626.873 kb on - strand at 626.873 kb on - strand at 626.968 kb on - strand at 626.998 kb on - strand at 627.078 kb on + strand at 627.078 kb on + strand at 627.079 kb on - strand at 627.111 kb on - strand at 627.131 kb on + strand at 627.257 kb on + strand at 627.257 kb on + strand at 627.257 kb on + strand at 627.258 kb on - strand at 627.295 kb on - strand at 627.355 kb on - strand, within HMPREF1058_RS10560 at 627.625 kb on - strand, within HMPREF1058_RS10560 at 627.755 kb on + strand, within HMPREF1058_RS10560 at 627.770 kb on + strand, within HMPREF1058_RS10560 at 627.966 kb on - strand, within HMPREF1058_RS10560 at 628.001 kb on + strand, within HMPREF1058_RS10560 at 628.002 kb on - strand, within HMPREF1058_RS10560 at 628.002 kb on - strand, within HMPREF1058_RS10560 at 628.002 kb on - strand, within HMPREF1058_RS10560 at 628.002 kb on - strand, within HMPREF1058_RS10560 at 628.026 kb on + strand, within HMPREF1058_RS10560 at 628.026 kb on + strand, within HMPREF1058_RS10560 at 628.068 kb on + strand, within HMPREF1058_RS10560 at 628.068 kb on + strand, within HMPREF1058_RS10560 at 628.069 kb on - strand, within HMPREF1058_RS10560 at 628.069 kb on - strand, within HMPREF1058_RS10560 at 628.069 kb on - strand, within HMPREF1058_RS10560 at 628.218 kb on - strand, within HMPREF1058_RS10560 at 628.220 kb on + strand, within HMPREF1058_RS10560 at 628.221 kb on - strand, within HMPREF1058_RS10560 at 628.244 kb on - strand, within HMPREF1058_RS10560 at 628.369 kb on - strand, within HMPREF1058_RS10560 at 628.466 kb on + strand, within HMPREF1058_RS10560 at 628.466 kb on + strand, within HMPREF1058_RS10560 at 628.467 kb on - strand, within HMPREF1058_RS10560 at 628.472 kb on + strand, within HMPREF1058_RS10560 at 628.476 kb on - strand, within HMPREF1058_RS10560 at 628.563 kb on + strand, within HMPREF1058_RS10560 at 628.564 kb on - strand, within HMPREF1058_RS10560 at 628.566 kb on - strand, within HMPREF1058_RS10560 at 628.577 kb on + strand, within HMPREF1058_RS10560 at 628.612 kb on + strand, within HMPREF1058_RS10560 at 628.619 kb on - strand, within HMPREF1058_RS10560 at 628.659 kb on - strand, within HMPREF1058_RS10560 at 628.679 kb on + strand, within HMPREF1058_RS10560 at 628.679 kb on + strand, within HMPREF1058_RS10560 at 628.680 kb on - strand, within HMPREF1058_RS10560 at 628.680 kb on - strand, within HMPREF1058_RS10560 at 628.680 kb on - strand, within HMPREF1058_RS10560 at 628.689 kb on + strand, within HMPREF1058_RS10560 at 628.691 kb on + strand, within HMPREF1058_RS10560 at 628.691 kb on + strand, within HMPREF1058_RS10560 at 628.873 kb on - strand at 628.877 kb on - strand at 628.891 kb on + strand at 628.892 kb on - strand at 628.901 kb on + strand at 629.155 kb on - strand at 629.332 kb on - strand, within HMPREF1058_RS10555 at 629.404 kb on + strand, within HMPREF1058_RS10555 at 629.408 kb on - strand, within HMPREF1058_RS10555 at 629.422 kb on - strand, within HMPREF1058_RS10555 at 629.517 kb on - strand, within HMPREF1058_RS10555 at 629.573 kb on + strand, within HMPREF1058_RS10555 at 629.663 kb on + strand, within HMPREF1058_RS10555 at 629.688 kb on + strand, within HMPREF1058_RS10555 at 629.766 kb on + strand, within HMPREF1058_RS10555 at 629.929 kb on + strand, within HMPREF1058_RS10555
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 remove 626,735 - -2.8 626,769 - -3.0 626,778 - -3.0 626,789 - -2.1 626,865 - -0.5 626,873 - -1.4 626,873 - -0.5 626,873 - -1.7 626,968 - -0.9 626,998 - -1.6 627,078 + -1.9 627,078 + +1.7 627,079 - +0.7 627,111 - +1.0 627,131 + -3.3 627,257 + -1.1 627,257 + -0.7 627,257 + -2.3 627,258 - +0.8 627,295 - -2.8 627,355 - HMPREF1058_RS10560 0.13 +0.8 627,625 - HMPREF1058_RS10560 0.27 -2.4 627,755 + HMPREF1058_RS10560 0.34 -1.5 627,770 + HMPREF1058_RS10560 0.35 -1.3 627,966 - HMPREF1058_RS10560 0.45 -1.7 628,001 + HMPREF1058_RS10560 0.47 -1.9 628,002 - HMPREF1058_RS10560 0.47 -1.9 628,002 - HMPREF1058_RS10560 0.47 -0.4 628,002 - HMPREF1058_RS10560 0.47 -2.0 628,002 - HMPREF1058_RS10560 0.47 -1.9 628,026 + HMPREF1058_RS10560 0.49 -2.2 628,026 + HMPREF1058_RS10560 0.49 +1.6 628,068 + HMPREF1058_RS10560 0.51 -2.1 628,068 + HMPREF1058_RS10560 0.51 -2.6 628,069 - HMPREF1058_RS10560 0.51 -2.9 628,069 - HMPREF1058_RS10560 0.51 +0.6 628,069 - HMPREF1058_RS10560 0.51 +0.8 628,218 - HMPREF1058_RS10560 0.59 -4.2 628,220 + HMPREF1058_RS10560 0.59 -2.4 628,221 - HMPREF1058_RS10560 0.59 -2.8 628,244 - HMPREF1058_RS10560 0.60 -2.2 628,369 - HMPREF1058_RS10560 0.67 -1.1 628,466 + HMPREF1058_RS10560 0.72 -2.3 628,466 + HMPREF1058_RS10560 0.72 -2.1 628,467 - HMPREF1058_RS10560 0.72 -1.7 628,472 + HMPREF1058_RS10560 0.72 +0.5 628,476 - HMPREF1058_RS10560 0.73 -0.9 628,563 + HMPREF1058_RS10560 0.77 -2.0 628,564 - HMPREF1058_RS10560 0.77 -1.1 628,566 - HMPREF1058_RS10560 0.77 -2.3 628,577 + HMPREF1058_RS10560 0.78 -1.1 628,612 + HMPREF1058_RS10560 0.80 -2.7 628,619 - HMPREF1058_RS10560 0.80 +0.2 628,659 - HMPREF1058_RS10560 0.82 -1.0 628,679 + HMPREF1058_RS10560 0.83 -2.9 628,679 + HMPREF1058_RS10560 0.83 -0.5 628,680 - HMPREF1058_RS10560 0.83 -3.3 628,680 - HMPREF1058_RS10560 0.83 -2.7 628,680 - HMPREF1058_RS10560 0.83 -1.7 628,689 + HMPREF1058_RS10560 0.84 -3.1 628,691 + HMPREF1058_RS10560 0.84 -1.3 628,691 + HMPREF1058_RS10560 0.84 -3.8 628,873 - -1.3 628,877 - -1.5 628,891 + -0.8 628,892 - +0.2 628,901 + -2.1 629,155 - -2.5 629,332 - HMPREF1058_RS10555 0.15 +1.7 629,404 + HMPREF1058_RS10555 0.19 -1.2 629,408 - HMPREF1058_RS10555 0.19 -0.5 629,422 - HMPREF1058_RS10555 0.20 -2.0 629,517 - HMPREF1058_RS10555 0.25 -1.2 629,573 + HMPREF1058_RS10555 0.28 -2.7 629,663 + HMPREF1058_RS10555 0.34 -3.0 629,688 + HMPREF1058_RS10555 0.35 -2.7 629,766 + HMPREF1058_RS10555 0.39 -1.7 629,929 + HMPREF1058_RS10555 0.49 -1.4
Or see this region's nucleotide sequence