Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10545 and HMPREF1058_RS10540 are separated by 439 nucleotides HMPREF1058_RS10540 and HMPREF1058_RS10535 are separated by 132 nucleotides
HMPREF1058_RS10545: HMPREF1058_RS10545 - TonB-dependent receptor, at 632,640 to 635,849
_RS10545
HMPREF1058_RS10540: HMPREF1058_RS10540 - glycoside hydrolase family 97 protein, at 636,289 to 638,217
_RS10540
HMPREF1058_RS10535: HMPREF1058_RS10535 - response regulator, at 638,350 to 642,576
_RS10535
Position (kb) 636
637
638
639 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 635.377 kb on - strand, within HMPREF1058_RS10545 at 635.440 kb on - strand, within HMPREF1058_RS10545 at 635.442 kb on + strand, within HMPREF1058_RS10545 at 635.442 kb on + strand, within HMPREF1058_RS10545 at 635.443 kb on - strand, within HMPREF1058_RS10545 at 635.449 kb on - strand, within HMPREF1058_RS10545 at 635.490 kb on + strand, within HMPREF1058_RS10545 at 635.491 kb on - strand, within HMPREF1058_RS10545 at 635.568 kb on + strand at 635.590 kb on - strand at 635.590 kb on - strand at 635.594 kb on - strand at 635.769 kb on + strand at 635.769 kb on + strand at 635.769 kb on + strand at 635.772 kb on - strand at 635.772 kb on - strand at 635.802 kb on + strand at 635.817 kb on - strand at 635.892 kb on - strand at 635.940 kb on - strand at 635.944 kb on - strand at 635.962 kb on - strand at 635.967 kb on + strand at 635.968 kb on - strand at 635.978 kb on + strand at 635.991 kb on - strand at 635.995 kb on - strand at 635.995 kb on - strand at 635.995 kb on - strand at 636.007 kb on - strand at 636.071 kb on + strand at 636.136 kb on + strand at 636.151 kb on + strand at 636.207 kb on - strand at 636.207 kb on - strand at 636.217 kb on - strand at 636.264 kb on + strand at 636.264 kb on + strand at 636.352 kb on + strand at 636.352 kb on + strand at 636.481 kb on + strand at 636.517 kb on + strand, within HMPREF1058_RS10540 at 636.518 kb on - strand at 636.522 kb on - strand, within HMPREF1058_RS10540 at 636.659 kb on - strand, within HMPREF1058_RS10540 at 636.700 kb on + strand, within HMPREF1058_RS10540 at 636.878 kb on + strand, within HMPREF1058_RS10540 at 636.879 kb on - strand, within HMPREF1058_RS10540 at 636.879 kb on - strand, within HMPREF1058_RS10540 at 636.891 kb on + strand, within HMPREF1058_RS10540 at 636.891 kb on + strand, within HMPREF1058_RS10540 at 636.891 kb on + strand, within HMPREF1058_RS10540 at 636.892 kb on - strand, within HMPREF1058_RS10540 at 636.946 kb on - strand, within HMPREF1058_RS10540 at 636.975 kb on - strand, within HMPREF1058_RS10540 at 637.015 kb on + strand, within HMPREF1058_RS10540 at 637.036 kb on + strand, within HMPREF1058_RS10540 at 637.038 kb on + strand, within HMPREF1058_RS10540 at 637.041 kb on + strand, within HMPREF1058_RS10540 at 637.109 kb on - strand, within HMPREF1058_RS10540 at 637.109 kb on - strand, within HMPREF1058_RS10540 at 637.110 kb on + strand, within HMPREF1058_RS10540 at 637.110 kb on + strand, within HMPREF1058_RS10540 at 637.134 kb on + strand, within HMPREF1058_RS10540 at 637.134 kb on + strand, within HMPREF1058_RS10540 at 637.142 kb on - strand, within HMPREF1058_RS10540 at 637.142 kb on - strand, within HMPREF1058_RS10540 at 637.147 kb on + strand, within HMPREF1058_RS10540 at 637.173 kb on - strand, within HMPREF1058_RS10540 at 637.177 kb on + strand, within HMPREF1058_RS10540 at 637.234 kb on + strand, within HMPREF1058_RS10540 at 637.235 kb on - strand, within HMPREF1058_RS10540 at 637.235 kb on - strand, within HMPREF1058_RS10540 at 637.238 kb on + strand, within HMPREF1058_RS10540 at 637.238 kb on + strand, within HMPREF1058_RS10540 at 637.239 kb on - strand, within HMPREF1058_RS10540 at 637.346 kb on + strand, within HMPREF1058_RS10540 at 637.347 kb on - strand, within HMPREF1058_RS10540 at 637.350 kb on + strand, within HMPREF1058_RS10540 at 637.351 kb on - strand, within HMPREF1058_RS10540 at 637.351 kb on - strand, within HMPREF1058_RS10540 at 637.351 kb on - strand, within HMPREF1058_RS10540 at 637.351 kb on - strand, within HMPREF1058_RS10540 at 637.524 kb on + strand, within HMPREF1058_RS10540 at 637.525 kb on - strand, within HMPREF1058_RS10540 at 637.568 kb on + strand, within HMPREF1058_RS10540 at 637.569 kb on - strand, within HMPREF1058_RS10540 at 637.667 kb on - strand, within HMPREF1058_RS10540 at 637.667 kb on - strand, within HMPREF1058_RS10540 at 637.667 kb on - strand, within HMPREF1058_RS10540 at 637.690 kb on - strand, within HMPREF1058_RS10540 at 637.691 kb on + strand, within HMPREF1058_RS10540 at 637.692 kb on - strand, within HMPREF1058_RS10540 at 637.703 kb on + strand, within HMPREF1058_RS10540 at 637.704 kb on - strand, within HMPREF1058_RS10540 at 637.704 kb on - strand, within HMPREF1058_RS10540 at 637.716 kb on + strand, within HMPREF1058_RS10540 at 637.717 kb on - strand, within HMPREF1058_RS10540 at 637.729 kb on + strand, within HMPREF1058_RS10540 at 637.730 kb on - strand, within HMPREF1058_RS10540 at 637.761 kb on + strand, within HMPREF1058_RS10540 at 637.888 kb on + strand, within HMPREF1058_RS10540 at 637.923 kb on + strand, within HMPREF1058_RS10540 at 637.923 kb on + strand, within HMPREF1058_RS10540 at 637.923 kb on + strand, within HMPREF1058_RS10540 at 637.983 kb on + strand, within HMPREF1058_RS10540 at 637.984 kb on - strand, within HMPREF1058_RS10540 at 638.090 kb on + strand at 638.128 kb on + strand at 638.134 kb on + strand at 638.167 kb on - strand at 638.240 kb on - strand at 638.252 kb on - strand at 638.253 kb on + strand at 638.254 kb on - strand at 638.254 kb on - strand at 638.259 kb on - strand at 638.295 kb on - strand at 638.317 kb on - strand at 638.318 kb on + strand at 638.319 kb on - strand at 638.319 kb on - strand at 638.335 kb on - strand at 638.420 kb on + strand at 638.447 kb on + strand at 638.448 kb on - strand at 638.463 kb on + strand at 638.464 kb on - strand at 638.630 kb on + strand at 638.643 kb on - strand at 638.643 kb on - strand at 638.770 kb on + strand at 639.075 kb on - strand, within HMPREF1058_RS10535 at 639.075 kb on - strand at 639.101 kb on - strand, within HMPREF1058_RS10535
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 remove 635,377 - HMPREF1058_RS10545 0.85 -0.5 635,440 - HMPREF1058_RS10545 0.87 -2.1 635,442 + HMPREF1058_RS10545 0.87 -1.4 635,442 + HMPREF1058_RS10545 0.87 -0.7 635,443 - HMPREF1058_RS10545 0.87 -1.2 635,449 - HMPREF1058_RS10545 0.88 -2.1 635,490 + HMPREF1058_RS10545 0.89 +1.1 635,491 - HMPREF1058_RS10545 0.89 -2.5 635,568 + -2.1 635,590 - -0.5 635,590 - -0.8 635,594 - -3.3 635,769 + +1.3 635,769 + -5.3 635,769 + -0.7 635,772 - +3.9 635,772 - -2.1 635,802 + -2.2 635,817 - +0.5 635,892 - +0.5 635,940 - +1.5 635,944 - -0.6 635,962 - +1.5 635,967 + -1.8 635,968 - -0.3 635,978 + -2.1 635,991 - +0.9 635,995 - +0.5 635,995 - +1.0 635,995 - -2.3 636,007 - -0.5 636,071 + -3.7 636,136 + -0.5 636,151 + -0.4 636,207 - +0.1 636,207 - +0.5 636,217 - +3.1 636,264 + -1.5 636,264 + +1.0 636,352 + +0.5 636,352 + -1.6 636,481 + -2.0 636,517 + HMPREF1058_RS10540 0.12 -4.0 636,518 - -1.5 636,522 - HMPREF1058_RS10540 0.12 +1.0 636,659 - HMPREF1058_RS10540 0.19 -2.0 636,700 + HMPREF1058_RS10540 0.21 -1.3 636,878 + HMPREF1058_RS10540 0.31 -0.5 636,879 - HMPREF1058_RS10540 0.31 -1.1 636,879 - HMPREF1058_RS10540 0.31 -2.9 636,891 + HMPREF1058_RS10540 0.31 -0.5 636,891 + HMPREF1058_RS10540 0.31 -1.6 636,891 + HMPREF1058_RS10540 0.31 -1.9 636,892 - HMPREF1058_RS10540 0.31 -0.7 636,946 - HMPREF1058_RS10540 0.34 -0.3 636,975 - HMPREF1058_RS10540 0.36 -0.0 637,015 + HMPREF1058_RS10540 0.38 -0.1 637,036 + HMPREF1058_RS10540 0.39 -2.5 637,038 + HMPREF1058_RS10540 0.39 -1.0 637,041 + HMPREF1058_RS10540 0.39 -2.7 637,109 - HMPREF1058_RS10540 0.43 -0.2 637,109 - HMPREF1058_RS10540 0.43 -2.3 637,110 + HMPREF1058_RS10540 0.43 +0.8 637,110 + HMPREF1058_RS10540 0.43 -0.4 637,134 + HMPREF1058_RS10540 0.44 -2.2 637,134 + HMPREF1058_RS10540 0.44 -1.2 637,142 - HMPREF1058_RS10540 0.44 -0.8 637,142 - HMPREF1058_RS10540 0.44 +0.6 637,147 + HMPREF1058_RS10540 0.44 -2.3 637,173 - HMPREF1058_RS10540 0.46 +2.6 637,177 + HMPREF1058_RS10540 0.46 -0.4 637,234 + HMPREF1058_RS10540 0.49 -2.1 637,235 - HMPREF1058_RS10540 0.49 +0.1 637,235 - HMPREF1058_RS10540 0.49 -0.8 637,238 + HMPREF1058_RS10540 0.49 +1.1 637,238 + HMPREF1058_RS10540 0.49 -1.4 637,239 - HMPREF1058_RS10540 0.49 +0.4 637,346 + HMPREF1058_RS10540 0.55 -1.1 637,347 - HMPREF1058_RS10540 0.55 -1.1 637,350 + HMPREF1058_RS10540 0.55 +1.9 637,351 - HMPREF1058_RS10540 0.55 +1.3 637,351 - HMPREF1058_RS10540 0.55 +0.7 637,351 - HMPREF1058_RS10540 0.55 -0.6 637,351 - HMPREF1058_RS10540 0.55 +0.7 637,524 + HMPREF1058_RS10540 0.64 -2.5 637,525 - HMPREF1058_RS10540 0.64 -1.0 637,568 + HMPREF1058_RS10540 0.66 -1.0 637,569 - HMPREF1058_RS10540 0.66 -2.0 637,667 - HMPREF1058_RS10540 0.71 -1.1 637,667 - HMPREF1058_RS10540 0.71 -3.0 637,667 - HMPREF1058_RS10540 0.71 -0.8 637,690 - HMPREF1058_RS10540 0.73 +1.1 637,691 + HMPREF1058_RS10540 0.73 -2.3 637,692 - HMPREF1058_RS10540 0.73 +1.2 637,703 + HMPREF1058_RS10540 0.73 +2.7 637,704 - HMPREF1058_RS10540 0.73 -2.3 637,704 - HMPREF1058_RS10540 0.73 +0.5 637,716 + HMPREF1058_RS10540 0.74 -1.9 637,717 - HMPREF1058_RS10540 0.74 +0.8 637,729 + HMPREF1058_RS10540 0.75 -0.1 637,730 - HMPREF1058_RS10540 0.75 -1.2 637,761 + HMPREF1058_RS10540 0.76 -1.5 637,888 + HMPREF1058_RS10540 0.83 -0.9 637,923 + HMPREF1058_RS10540 0.85 -0.3 637,923 + HMPREF1058_RS10540 0.85 -1.5 637,923 + HMPREF1058_RS10540 0.85 +2.8 637,983 + HMPREF1058_RS10540 0.88 -2.0 637,984 - HMPREF1058_RS10540 0.88 -1.3 638,090 + +4.2 638,128 + +0.1 638,134 + -1.5 638,167 - +3.9 638,240 - -1.9 638,252 - -1.1 638,253 + -2.9 638,254 - -1.5 638,254 - +0.0 638,259 - +1.3 638,295 - +0.7 638,317 - -1.2 638,318 + -0.2 638,319 - -0.2 638,319 - -0.1 638,335 - +1.2 638,420 + -0.5 638,447 + +0.5 638,448 - -3.5 638,463 + -0.5 638,464 - -2.5 638,630 + -0.1 638,643 - -2.0 638,643 - +0.0 638,770 + -1.3 639,075 - HMPREF1058_RS10535 0.17 -1.5 639,075 - -0.1 639,101 - HMPREF1058_RS10535 0.18 -0.6
Or see this region's nucleotide sequence