Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08425

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7
1,152,670	-		HMPREF1058_RS08430	0.60	+1.0
1,152,670	-		HMPREF1058_RS08430	0.60	+2.8
1,152,695	+		HMPREF1058_RS08430	0.61	-0.5
1,152,701	+		HMPREF1058_RS08430	0.62	-1.8
1,152,701	+		HMPREF1058_RS08430	0.62	-0.3
1,152,702	-		HMPREF1058_RS08430	0.62	+1.5
1,152,960	+		HMPREF1058_RS08430	0.77	-1.4
1,152,961	-		HMPREF1058_RS08430	0.77	+0.3
1,152,961	-		HMPREF1058_RS08430	0.77	+0.2
1,153,085	-		HMPREF1058_RS08430	0.85	+2.2
1,153,161	-		HMPREF1058_RS08430	0.89	-0.1
1,153,161	-		HMPREF1058_RS08430	0.89	-2.1
1,153,182	-				-0.0
1,153,182	-				+1.0
1,153,197	-				+2.3
1,153,272	-				-1.4
1,153,359	+				+0.0
1,153,371	+				+0.3
1,153,371	+				-1.8
1,153,371	+				-0.9
1,153,375	+				+0.6
1,153,378	-				+0.9
1,153,378	-				+1.2
1,153,406	+				-0.8
1,153,406	+				-0.1
1,153,443	-				-1.3
1,153,528	-				+1.2
1,153,607	+				-0.2
1,153,628	-				-2.5
1,153,631	-				+0.6
1,153,648	-				+0.5
1,153,735	+				-0.3
1,153,736	-				+0.5
1,153,757	+				-0.5
1,153,758	-				+1.7
1,153,760	+				+0.7
1,153,760	+				+0.1
1,153,801	-				-0.5
1,153,840	-				-0.3
1,153,860	-				-3.8
1,153,860	-				+0.8
1,153,907	+		HMPREF1058_RS08425	0.11	-2.3
1,153,907	+		HMPREF1058_RS08425	0.11	-1.5
1,153,908	-		HMPREF1058_RS08425	0.11	-1.6
1,153,908	-		HMPREF1058_RS08425	0.11	-3.2
1,153,913	-		HMPREF1058_RS08425	0.11	+1.2
1,153,999	-		HMPREF1058_RS08425	0.15	+0.6
1,154,030	-		HMPREF1058_RS08425	0.16	-2.5
1,154,051	+		HMPREF1058_RS08425	0.17	-0.2
1,154,051	+		HMPREF1058_RS08425	0.17	+0.0
1,154,122	-		HMPREF1058_RS08425	0.20	+1.2
1,154,207	+		HMPREF1058_RS08425	0.23	-0.5
1,154,207	+		HMPREF1058_RS08425	0.23	+0.2
1,154,211	-		HMPREF1058_RS08425	0.24	-4.1
1,154,312	+		HMPREF1058_RS08425	0.28	-2.7
1,154,313	-		HMPREF1058_RS08425	0.28	-0.9
1,154,333	+		HMPREF1058_RS08425	0.29	+0.8
1,154,333	+		HMPREF1058_RS08425	0.29	-0.4
1,154,333	+		HMPREF1058_RS08425	0.29	+1.1
1,154,359	+		HMPREF1058_RS08425	0.30	+1.2
1,154,379	+		HMPREF1058_RS08425	0.30	+0.7
1,154,380	-		HMPREF1058_RS08425	0.30	+2.8
1,154,437	+		HMPREF1058_RS08425	0.33	+1.2
1,154,437	+		HMPREF1058_RS08425	0.33	-0.6
1,154,438	-		HMPREF1058_RS08425	0.33	+1.0
1,154,503	-		HMPREF1058_RS08425	0.35	-1.7
1,154,503	-		HMPREF1058_RS08425	0.35	+3.0
1,154,613	-		HMPREF1058_RS08425	0.40	-0.6
1,154,780	+		HMPREF1058_RS08425	0.47	-1.2
1,154,829	-		HMPREF1058_RS08425	0.49	+2.1
1,154,829	-		HMPREF1058_RS08425	0.49	+1.8
1,155,002	+		HMPREF1058_RS08425	0.56	-0.9
1,155,003	-		HMPREF1058_RS08425	0.56	+1.8
1,155,015	-		HMPREF1058_RS08425	0.56	-0.5
1,155,226	+		HMPREF1058_RS08425	0.65	+1.0
1,155,262	+		HMPREF1058_RS08425	0.66	+0.6
1,155,291	-		HMPREF1058_RS08425	0.68	+1.2
1,155,318	-				+0.5
1,155,372	-		HMPREF1058_RS08425	0.71	+0.3
1,155,437	-		HMPREF1058_RS08425	0.74	-0.4
1,155,470	+		HMPREF1058_RS08425	0.75	+0.2
1,155,471	-		HMPREF1058_RS08425	0.75	-1.0
1,155,471	-		HMPREF1058_RS08425	0.75	-1.9
1,155,509	+		HMPREF1058_RS08425	0.76	-0.5
1,155,509	+		HMPREF1058_RS08425	0.76	+0.3
1,155,585	+		HMPREF1058_RS08425	0.80	+0.7
1,155,586	-		HMPREF1058_RS08425	0.80	-0.8
1,155,586	-		HMPREF1058_RS08425	0.80	-0.4
1,155,587	+		HMPREF1058_RS08425	0.80	-1.1
1,155,587	+		HMPREF1058_RS08425	0.80	-2.5
1,155,607	+		HMPREF1058_RS08425	0.80	+1.0
1,155,687	+		HMPREF1058_RS08425	0.84	-2.0
1,155,694	+		HMPREF1058_RS08425	0.84	-0.1
1,155,698	+		HMPREF1058_RS08425	0.84	+0.0
1,155,773	+		HMPREF1058_RS08425	0.87	+2.5
1,155,854	-				-0.4
1,155,854	-				+0.2
1,155,869	+				-1.4
1,155,870	-				+1.1
1,155,895	+				+2.1
1,155,973	+				-1.8
1,156,038	+				-0.6
1,156,109	+				+0.2
1,156,111	+				+1.8
1,156,117	-				+1.0
1,156,117	-				+2.4
1,156,274	-		HMPREF1058_RS08420	0.13	-3.0
1,156,274	-		HMPREF1058_RS08420	0.13	+1.6
1,156,293	+		HMPREF1058_RS08420	0.15	-3.0
1,156,313	+		HMPREF1058_RS08420	0.17	+0.7
1,156,326	-		HMPREF1058_RS08420	0.18	+1.7
1,156,349	-		HMPREF1058_RS08420	0.20	+0.6
1,156,432	+		HMPREF1058_RS08420	0.27	+1.1
1,156,445	+		HMPREF1058_RS08420	0.28	+1.5
1,156,445	+		HMPREF1058_RS08420	0.28	-1.1
1,156,445	+		HMPREF1058_RS08420	0.28	+1.5
1,156,446	-		HMPREF1058_RS08420	0.28	+1.2
1,156,446	-		HMPREF1058_RS08420	0.28	-0.5
1,156,469	-				+1.1
1,156,470	+		HMPREF1058_RS08420	0.30	-2.6
1,156,470	+		HMPREF1058_RS08420	0.30	+0.6
1,156,473	-		HMPREF1058_RS08420	0.31	+2.0
1,156,473	-		HMPREF1058_RS08420	0.31	-0.3
1,156,732	+		HMPREF1058_RS08420	0.53	-1.6
1,156,733	-		HMPREF1058_RS08420	0.53	-1.5
1,156,735	+		HMPREF1058_RS08420	0.54	-2.7
1,156,735	+		HMPREF1058_RS08420	0.54	+0.3
1,156,811	+		HMPREF1058_RS08420	0.60	-0.3
1,156,811	+		HMPREF1058_RS08420	0.60	+1.1
1,156,866	+		HMPREF1058_RS08420	0.65	+0.7
1,156,926	-		HMPREF1058_RS08420	0.70	-2.2
1,156,926	-		HMPREF1058_RS08420	0.70	+0.8
1,156,926	-		HMPREF1058_RS08420	0.70	+0.1
1,156,928	+		HMPREF1058_RS08420	0.71	+4.3
1,157,001	-		HMPREF1058_RS08420	0.77	-2.5
1,157,001	-		HMPREF1058_RS08420	0.77	+0.4
1,157,001	-				+0.5
1,157,001	-		HMPREF1058_RS08420	0.77	-1.8