Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08110

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS08115 and HMPREF1058_RS08110 are separated by 153 nucleotidesHMPREF1058_RS08110 and HMPREF1058_RS08105 are separated by 17 nucleotides HMPREF1058_RS08115: HMPREF1058_RS08115 - glycoside hydrolase family 97 protein, at 47,654 to 49,591 _RS08115 HMPREF1058_RS08110: HMPREF1058_RS08110 - glycosyl hydrolase 43 family protein, at 49,745 to 51,394 _RS08110 HMPREF1058_RS08105: HMPREF1058_RS08105 - glycoside hydrolase family 88 protein, at 51,412 to 52,635 _RS08105 Position (kb) 49 50 51 52Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 49.036 kb on + strand, within HMPREF1058_RS08115at 49.169 kb on - strand, within HMPREF1058_RS08115at 49.285 kb on + strand, within HMPREF1058_RS08115at 49.286 kb on - strand, within HMPREF1058_RS08115at 49.287 kb on + strand, within HMPREF1058_RS08115at 49.287 kb on + strand, within HMPREF1058_RS08115at 49.287 kb on + strand, within HMPREF1058_RS08115at 49.288 kb on - strand, within HMPREF1058_RS08115at 49.288 kb on - strand, within HMPREF1058_RS08115at 49.291 kb on + strand, within HMPREF1058_RS08115at 49.323 kb on + strand, within HMPREF1058_RS08115at 49.378 kb on - strand, within HMPREF1058_RS08115at 49.395 kb on - strand, within HMPREF1058_RS08115at 49.409 kb on + strandat 49.562 kb on + strandat 49.572 kb on - strandat 49.584 kb on + strandat 49.590 kb on - strandat 49.637 kb on + strandat 49.638 kb on - strandat 49.647 kb on - strandat 49.666 kb on - strandat 49.732 kb on - strandat 49.741 kb on - strandat 49.762 kb on + strandat 49.822 kb on - strandat 49.850 kb on + strandat 49.851 kb on - strandat 49.855 kb on + strandat 49.864 kb on + strandat 50.075 kb on - strand, within HMPREF1058_RS08110at 50.129 kb on - strand, within HMPREF1058_RS08110at 50.343 kb on + strand, within HMPREF1058_RS08110at 50.378 kb on - strand, within HMPREF1058_RS08110at 50.380 kb on + strand, within HMPREF1058_RS08110at 50.381 kb on - strand, within HMPREF1058_RS08110at 50.382 kb on + strand, within HMPREF1058_RS08110at 50.393 kb on - strand, within HMPREF1058_RS08110at 50.393 kb on - strand, within HMPREF1058_RS08110at 50.606 kb on - strand, within HMPREF1058_RS08110at 50.616 kb on - strand, within HMPREF1058_RS08110at 50.733 kb on + strand, within HMPREF1058_RS08110at 50.734 kb on - strand, within HMPREF1058_RS08110at 50.734 kb on - strand, within HMPREF1058_RS08110at 50.871 kb on - strand, within HMPREF1058_RS08110at 50.871 kb on - strand, within HMPREF1058_RS08110at 50.871 kb on - strand, within HMPREF1058_RS08110at 51.045 kb on + strand, within HMPREF1058_RS08110at 51.179 kb on + strand, within HMPREF1058_RS08110at 51.195 kb on - strand, within HMPREF1058_RS08110at 51.223 kb on + strand, within HMPREF1058_RS08110at 51.224 kb on - strand, within HMPREF1058_RS08110at 51.224 kb on - strand, within HMPREF1058_RS08110at 51.231 kb on - strandat 51.262 kb on + strandat 51.283 kb on + strandat 51.306 kb on + strandat 51.318 kb on + strandat 51.408 kb on - strandat 51.412 kb on - strandat 51.428 kb on + strandat 51.431 kb on + strandat 51.434 kb on + strandat 51.438 kb on + strandat 51.438 kb on + strandat 51.441 kb on - strandat 51.446 kb on + strandat 51.447 kb on - strandat 51.473 kb on + strandat 51.524 kb on + strandat 51.525 kb on - strandat 51.525 kb on - strandat 51.571 kb on + strand, within HMPREF1058_RS08105at 51.620 kb on - strand, within HMPREF1058_RS08105at 51.676 kb on + strand, within HMPREF1058_RS08105at 51.690 kb on + strand, within HMPREF1058_RS08105at 51.691 kb on - strand, within HMPREF1058_RS08105at 51.802 kb on + strand, within HMPREF1058_RS08105at 51.802 kb on + strand, within HMPREF1058_RS08105at 51.840 kb on + strand, within HMPREF1058_RS08105at 51.840 kb on + strand, within HMPREF1058_RS08105at 51.840 kb on + strand, within HMPREF1058_RS08105at 51.841 kb on - strand, within HMPREF1058_RS08105at 51.852 kb on - strand, within HMPREF1058_RS08105at 51.897 kb on - strand, within HMPREF1058_RS08105at 51.900 kb on + strand, within HMPREF1058_RS08105at 52.008 kb on + strand, within HMPREF1058_RS08105at 52.009 kb on - strand, within HMPREF1058_RS08105at 52.015 kb on + strand, within HMPREF1058_RS08105at 52.081 kb on - strand, within HMPREF1058_RS08105at 52.081 kb on - strand, within HMPREF1058_RS08105at 52.087 kb on + strandat 52.103 kb on - strand, within HMPREF1058_RS08105at 52.164 kb on + strand, within HMPREF1058_RS08105at 52.164 kb on + strand, within HMPREF1058_RS08105at 52.165 kb on - strand, within HMPREF1058_RS08105at 52.191 kb on + strand, within HMPREF1058_RS08105at 52.202 kb on - strand, within HMPREF1058_RS08105at 52.203 kb on + strand, within HMPREF1058_RS08105at 52.204 kb on - strand, within HMPREF1058_RS08105at 52.259 kb on + strand, within HMPREF1058_RS08105at 52.268 kb on + strand, within HMPREF1058_RS08105at 52.268 kb on + strand, within HMPREF1058_RS08105at 52.268 kb on + strand, within HMPREF1058_RS08105at 52.269 kb on - strand, within HMPREF1058_RS08105at 52.270 kb on + strand, within HMPREF1058_RS08105at 52.367 kb on + strand, within HMPREF1058_RS08105

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7
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49,036 + HMPREF1058_RS08115 0.71 -1.3
49,169 - HMPREF1058_RS08115 0.78 +1.0
49,285 + HMPREF1058_RS08115 0.84 +1.0
49,286 - HMPREF1058_RS08115 0.84 -1.7
49,287 + HMPREF1058_RS08115 0.84 -0.3
49,287 + HMPREF1058_RS08115 0.84 -0.1
49,287 + HMPREF1058_RS08115 0.84 +4.0
49,288 - HMPREF1058_RS08115 0.84 -0.9
49,288 - HMPREF1058_RS08115 0.84 +0.9
49,291 + HMPREF1058_RS08115 0.84 +1.1
49,323 + HMPREF1058_RS08115 0.86 +1.7
49,378 - HMPREF1058_RS08115 0.89 -1.0
49,395 - HMPREF1058_RS08115 0.90 +0.2
49,409 + -1.0
49,562 + -1.6
49,572 - +2.2
49,584 + -0.9
49,590 - -1.1
49,637 + -0.2
49,638 - -2.3
49,647 - -2.7
49,666 - -2.7
49,732 - -3.1
49,741 - -0.8
49,762 + -0.5
49,822 - -3.5
49,850 + +0.6
49,851 - -2.9
49,855 + +0.5
49,864 + -0.9
50,075 - HMPREF1058_RS08110 0.20 -0.9
50,129 - HMPREF1058_RS08110 0.23 -3.5
50,343 + HMPREF1058_RS08110 0.36 -2.1
50,378 - HMPREF1058_RS08110 0.38 -0.9
50,380 + HMPREF1058_RS08110 0.38 +0.3
50,381 - HMPREF1058_RS08110 0.39 -4.9
50,382 + HMPREF1058_RS08110 0.39 +1.4
50,393 - HMPREF1058_RS08110 0.39 -3.3
50,393 - HMPREF1058_RS08110 0.39 -1.9
50,606 - HMPREF1058_RS08110 0.52 -3.4
50,616 - HMPREF1058_RS08110 0.53 -2.9
50,733 + HMPREF1058_RS08110 0.60 +1.2
50,734 - HMPREF1058_RS08110 0.60 -2.1
50,734 - HMPREF1058_RS08110 0.60 -2.0
50,871 - HMPREF1058_RS08110 0.68 -2.3
50,871 - HMPREF1058_RS08110 0.68 +0.7
50,871 - HMPREF1058_RS08110 0.68 -2.3
51,045 + HMPREF1058_RS08110 0.79 +0.7
51,179 + HMPREF1058_RS08110 0.87 +5.5
51,195 - HMPREF1058_RS08110 0.88 -1.8
51,223 + HMPREF1058_RS08110 0.90 -0.8
51,224 - HMPREF1058_RS08110 0.90 -2.1
51,224 - HMPREF1058_RS08110 0.90 -4.2
51,231 - +0.7
51,262 + +0.1
51,283 + -1.5
51,306 + +0.7
51,318 + +0.4
51,408 - -1.7
51,412 - -2.2
51,428 + -4.8
51,431 + -1.3
51,434 + -3.8
51,438 + +0.0
51,438 + +1.4
51,441 - -1.2
51,446 + -2.0
51,447 - -2.7
51,473 + -3.1
51,524 + -2.0
51,525 - -1.3
51,525 - +0.1
51,571 + HMPREF1058_RS08105 0.13 -0.3
51,620 - HMPREF1058_RS08105 0.17 +0.5
51,676 + HMPREF1058_RS08105 0.22 -3.8
51,690 + HMPREF1058_RS08105 0.23 +0.7
51,691 - HMPREF1058_RS08105 0.23 -3.1
51,802 + HMPREF1058_RS08105 0.32 -4.3
51,802 + HMPREF1058_RS08105 0.32 -2.6
51,840 + HMPREF1058_RS08105 0.35 +1.7
51,840 + HMPREF1058_RS08105 0.35 -0.9
51,840 + HMPREF1058_RS08105 0.35 -3.3
51,841 - HMPREF1058_RS08105 0.35 -3.2
51,852 - HMPREF1058_RS08105 0.36 -3.4
51,897 - HMPREF1058_RS08105 0.40 -2.5
51,900 + HMPREF1058_RS08105 0.40 -2.4
52,008 + HMPREF1058_RS08105 0.49 -4.7
52,009 - HMPREF1058_RS08105 0.49 -0.5
52,015 + HMPREF1058_RS08105 0.49 -2.9
52,081 - HMPREF1058_RS08105 0.55 -2.7
52,081 - HMPREF1058_RS08105 0.55 -0.8
52,087 + -1.7
52,103 - HMPREF1058_RS08105 0.56 -1.9
52,164 + HMPREF1058_RS08105 0.61 -2.4
52,164 + HMPREF1058_RS08105 0.61 -3.1
52,165 - HMPREF1058_RS08105 0.62 -2.3
52,191 + HMPREF1058_RS08105 0.64 -2.9
52,202 - HMPREF1058_RS08105 0.65 -0.8
52,203 + HMPREF1058_RS08105 0.65 -2.7
52,204 - HMPREF1058_RS08105 0.65 -3.4
52,259 + HMPREF1058_RS08105 0.69 -1.3
52,268 + HMPREF1058_RS08105 0.70 -1.7
52,268 + HMPREF1058_RS08105 0.70 -0.3
52,268 + HMPREF1058_RS08105 0.70 -2.5
52,269 - HMPREF1058_RS08105 0.70 -1.9
52,270 + HMPREF1058_RS08105 0.70 -3.3
52,367 + HMPREF1058_RS08105 0.78 +0.7

Or see this region's nucleotide sequence