Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07100

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07105 and HMPREF1058_RS07100 are separated by 50 nucleotides HMPREF1058_RS07105: HMPREF1058_RS07105 - lipid A phosphoethanolamine transferase, at 313,600 to 315,306 _RS07105 HMPREF1058_RS07100: HMPREF1058_RS07100 - D-xylose transporter XylE, at 315,357 to 316,796 _RS07100 Position (kb) 315 316 317Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 314.361 kb on - strand, within HMPREF1058_RS07105at 314.412 kb on + strand, within HMPREF1058_RS07105at 314.415 kb on + strand, within HMPREF1058_RS07105at 314.415 kb on + strand, within HMPREF1058_RS07105at 314.418 kb on + strand, within HMPREF1058_RS07105at 314.419 kb on - strand, within HMPREF1058_RS07105at 314.425 kb on - strand, within HMPREF1058_RS07105at 314.425 kb on - strand, within HMPREF1058_RS07105at 314.436 kb on + strand, within HMPREF1058_RS07105at 314.437 kb on - strand, within HMPREF1058_RS07105at 314.437 kb on - strand, within HMPREF1058_RS07105at 314.467 kb on + strand, within HMPREF1058_RS07105at 314.468 kb on - strand, within HMPREF1058_RS07105at 314.651 kb on + strandat 314.730 kb on + strand, within HMPREF1058_RS07105at 314.730 kb on + strand, within HMPREF1058_RS07105at 314.737 kb on - strand, within HMPREF1058_RS07105at 314.827 kb on + strand, within HMPREF1058_RS07105at 314.833 kb on - strand, within HMPREF1058_RS07105at 314.835 kb on + strand, within HMPREF1058_RS07105at 314.835 kb on + strand, within HMPREF1058_RS07105at 314.836 kb on - strand, within HMPREF1058_RS07105at 314.836 kb on - strand, within HMPREF1058_RS07105at 314.847 kb on + strand, within HMPREF1058_RS07105at 314.879 kb on + strand, within HMPREF1058_RS07105at 314.914 kb on + strand, within HMPREF1058_RS07105at 314.915 kb on - strand, within HMPREF1058_RS07105at 314.915 kb on - strand, within HMPREF1058_RS07105at 314.990 kb on - strand, within HMPREF1058_RS07105at 315.153 kb on + strandat 315.162 kb on + strandat 315.187 kb on + strandat 315.248 kb on + strandat 315.269 kb on + strandat 315.464 kb on + strandat 315.495 kb on + strandat 315.500 kb on + strandat 315.501 kb on - strand, within HMPREF1058_RS07100at 315.550 kb on + strand, within HMPREF1058_RS07100at 315.702 kb on + strand, within HMPREF1058_RS07100at 315.703 kb on - strand, within HMPREF1058_RS07100at 315.729 kb on - strand, within HMPREF1058_RS07100at 315.738 kb on - strand, within HMPREF1058_RS07100at 315.825 kb on + strand, within HMPREF1058_RS07100at 315.825 kb on + strand, within HMPREF1058_RS07100at 315.826 kb on - strand, within HMPREF1058_RS07100at 315.913 kb on - strand, within HMPREF1058_RS07100at 315.925 kb on - strand, within HMPREF1058_RS07100at 315.980 kb on + strand, within HMPREF1058_RS07100at 315.980 kb on + strand, within HMPREF1058_RS07100at 316.093 kb on + strand, within HMPREF1058_RS07100at 316.119 kb on - strand, within HMPREF1058_RS07100at 316.119 kb on - strand, within HMPREF1058_RS07100at 316.181 kb on + strand, within HMPREF1058_RS07100at 316.186 kb on - strand, within HMPREF1058_RS07100at 316.260 kb on + strand, within HMPREF1058_RS07100at 316.264 kb on - strand, within HMPREF1058_RS07100at 316.333 kb on + strand, within HMPREF1058_RS07100at 316.427 kb on - strand, within HMPREF1058_RS07100at 316.496 kb on - strand, within HMPREF1058_RS07100at 316.496 kb on - strand, within HMPREF1058_RS07100at 316.533 kb on - strand, within HMPREF1058_RS07100at 316.558 kb on + strand, within HMPREF1058_RS07100at 316.615 kb on + strand, within HMPREF1058_RS07100at 316.653 kb on + strandat 316.653 kb on + strandat 316.764 kb on - strandat 316.764 kb on - strandat 316.794 kb on + strandat 316.794 kb on + strandat 316.838 kb on + strandat 316.911 kb on + strandat 317.136 kb on + strandat 317.262 kb on + strandat 317.346 kb on + strandat 317.347 kb on - strandat 317.347 kb on - strandat 317.351 kb on - strandat 317.371 kb on + strandat 317.372 kb on - strandat 317.492 kb on - strandat 317.503 kb on + strandat 317.511 kb on - strandat 317.546 kb on + strandat 317.645 kb on - strandat 317.649 kb on + strandat 317.650 kb on - strandat 317.651 kb on + strandat 317.721 kb on - strandat 317.721 kb on - strandat 317.774 kb on - strandat 317.774 kb on - strandat 317.774 kb on - strandat 317.778 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7
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314,361 - HMPREF1058_RS07105 0.45 -0.3
314,412 + HMPREF1058_RS07105 0.48 -1.8
314,415 + HMPREF1058_RS07105 0.48 -1.0
314,415 + HMPREF1058_RS07105 0.48 -0.3
314,418 + HMPREF1058_RS07105 0.48 +0.1
314,419 - HMPREF1058_RS07105 0.48 +0.1
314,425 - HMPREF1058_RS07105 0.48 -1.5
314,425 - HMPREF1058_RS07105 0.48 +1.1
314,436 + HMPREF1058_RS07105 0.49 +0.0
314,437 - HMPREF1058_RS07105 0.49 -0.3
314,437 - HMPREF1058_RS07105 0.49 -0.1
314,467 + HMPREF1058_RS07105 0.51 +1.4
314,468 - HMPREF1058_RS07105 0.51 +1.3
314,651 + -0.9
314,730 + HMPREF1058_RS07105 0.66 +0.7
314,730 + HMPREF1058_RS07105 0.66 +1.1
314,737 - HMPREF1058_RS07105 0.67 -1.0
314,827 + HMPREF1058_RS07105 0.72 -1.6
314,833 - HMPREF1058_RS07105 0.72 -1.3
314,835 + HMPREF1058_RS07105 0.72 -1.9
314,835 + HMPREF1058_RS07105 0.72 -2.3
314,836 - HMPREF1058_RS07105 0.72 +0.5
314,836 - HMPREF1058_RS07105 0.72 -1.3
314,847 + HMPREF1058_RS07105 0.73 -1.5
314,879 + HMPREF1058_RS07105 0.75 +0.5
314,914 + HMPREF1058_RS07105 0.77 -0.2
314,915 - HMPREF1058_RS07105 0.77 -0.9
314,915 - HMPREF1058_RS07105 0.77 -1.9
314,990 - HMPREF1058_RS07105 0.81 -0.3
315,153 + -0.4
315,162 + -0.8
315,187 + +0.9
315,248 + +1.5
315,269 + -2.0
315,464 + +0.4
315,495 + -1.9
315,500 + -1.9
315,501 - HMPREF1058_RS07100 0.10 +0.2
315,550 + HMPREF1058_RS07100 0.13 -1.6
315,702 + HMPREF1058_RS07100 0.24 +0.7
315,703 - HMPREF1058_RS07100 0.24 -0.9
315,729 - HMPREF1058_RS07100 0.26 +1.1
315,738 - HMPREF1058_RS07100 0.26 +2.3
315,825 + HMPREF1058_RS07100 0.33 +1.4
315,825 + HMPREF1058_RS07100 0.33 +0.7
315,826 - HMPREF1058_RS07100 0.33 -0.8
315,913 - HMPREF1058_RS07100 0.39 -2.5
315,925 - HMPREF1058_RS07100 0.39 +3.7
315,980 + HMPREF1058_RS07100 0.43 +2.1
315,980 + HMPREF1058_RS07100 0.43 -1.6
316,093 + HMPREF1058_RS07100 0.51 +1.4
316,119 - HMPREF1058_RS07100 0.53 -0.5
316,119 - HMPREF1058_RS07100 0.53 -2.1
316,181 + HMPREF1058_RS07100 0.57 -0.9
316,186 - HMPREF1058_RS07100 0.58 -4.7
316,260 + HMPREF1058_RS07100 0.63 +1.7
316,264 - HMPREF1058_RS07100 0.63 +2.0
316,333 + HMPREF1058_RS07100 0.68 -0.3
316,427 - HMPREF1058_RS07100 0.74 +1.1
316,496 - HMPREF1058_RS07100 0.79 -2.6
316,496 - HMPREF1058_RS07100 0.79 -0.3
316,533 - HMPREF1058_RS07100 0.82 -0.6
316,558 + HMPREF1058_RS07100 0.83 -1.6
316,615 + HMPREF1058_RS07100 0.87 -0.5
316,653 + -2.1
316,653 + -1.3
316,764 - +1.5
316,764 - +1.7
316,794 + -0.3
316,794 + +0.7
316,838 + +0.4
316,911 + +0.9
317,136 + +0.7
317,262 + +3.1
317,346 + +0.7
317,347 - +0.7
317,347 - +0.2
317,351 - -0.7
317,371 + +0.2
317,372 - -1.1
317,492 - -0.0
317,503 + -0.1
317,511 - -1.3
317,546 + -1.3
317,645 - -0.1
317,649 + -1.1
317,650 - -0.5
317,651 + +0.3
317,721 - -0.4
317,721 - -0.0
317,774 - +0.1
317,774 - +3.1
317,774 - -0.6
317,778 - -0.9

Or see this region's nucleotide sequence