Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06650

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06655 and HMPREF1058_RS06650 are separated by 91 nucleotidesHMPREF1058_RS06650 and HMPREF1058_RS06645 are separated by 240 nucleotides HMPREF1058_RS06655: HMPREF1058_RS06655 - carbohydrate kinase, at 425,578 to 427,071 _RS06655 HMPREF1058_RS06650: HMPREF1058_RS06650 - xylose isomerase, at 427,163 to 428,479 _RS06650 HMPREF1058_RS06645: HMPREF1058_RS06645 - SLBB domain-containing protein, at 428,720 to 431,212 _RS06645 Position (kb) 427 428 429Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 426.236 kb on + strand, within HMPREF1058_RS06655at 426.380 kb on + strand, within HMPREF1058_RS06655at 426.380 kb on + strand, within HMPREF1058_RS06655at 426.381 kb on - strand, within HMPREF1058_RS06655at 426.381 kb on - strand, within HMPREF1058_RS06655at 426.381 kb on - strand, within HMPREF1058_RS06655at 426.381 kb on - strand, within HMPREF1058_RS06655at 426.382 kb on + strand, within HMPREF1058_RS06655at 426.383 kb on - strand, within HMPREF1058_RS06655at 426.443 kb on + strand, within HMPREF1058_RS06655at 426.526 kb on - strand, within HMPREF1058_RS06655at 426.538 kb on + strand, within HMPREF1058_RS06655at 426.551 kb on - strand, within HMPREF1058_RS06655at 426.558 kb on + strand, within HMPREF1058_RS06655at 426.636 kb on + strand, within HMPREF1058_RS06655at 426.666 kb on + strand, within HMPREF1058_RS06655at 426.666 kb on + strand, within HMPREF1058_RS06655at 426.666 kb on + strand, within HMPREF1058_RS06655at 426.668 kb on + strand, within HMPREF1058_RS06655at 426.668 kb on + strand, within HMPREF1058_RS06655at 426.669 kb on - strand, within HMPREF1058_RS06655at 426.669 kb on - strand, within HMPREF1058_RS06655at 426.669 kb on - strand, within HMPREF1058_RS06655at 426.705 kb on + strand, within HMPREF1058_RS06655at 426.706 kb on - strand, within HMPREF1058_RS06655at 426.814 kb on - strand, within HMPREF1058_RS06655at 426.814 kb on - strand, within HMPREF1058_RS06655at 426.828 kb on + strand, within HMPREF1058_RS06655at 426.866 kb on + strand, within HMPREF1058_RS06655at 426.934 kb on + strandat 426.937 kb on - strandat 427.024 kb on + strandat 427.025 kb on - strandat 427.025 kb on - strandat 427.142 kb on + strandat 427.192 kb on - strandat 427.247 kb on + strandat 427.318 kb on + strand, within HMPREF1058_RS06650at 427.318 kb on + strand, within HMPREF1058_RS06650at 427.318 kb on + strand, within HMPREF1058_RS06650at 427.461 kb on - strand, within HMPREF1058_RS06650at 427.512 kb on - strand, within HMPREF1058_RS06650at 427.533 kb on + strand, within HMPREF1058_RS06650at 427.617 kb on - strand, within HMPREF1058_RS06650at 427.748 kb on + strand, within HMPREF1058_RS06650at 427.750 kb on + strand, within HMPREF1058_RS06650at 427.843 kb on + strand, within HMPREF1058_RS06650at 427.844 kb on - strand, within HMPREF1058_RS06650at 427.895 kb on + strand, within HMPREF1058_RS06650at 427.985 kb on - strand, within HMPREF1058_RS06650at 428.000 kb on - strand, within HMPREF1058_RS06650at 428.207 kb on - strand, within HMPREF1058_RS06650at 428.328 kb on - strand, within HMPREF1058_RS06650at 428.392 kb on - strandat 428.392 kb on - strandat 428.430 kb on + strandat 428.430 kb on + strandat 428.463 kb on + strandat 428.467 kb on + strandat 428.467 kb on + strandat 428.471 kb on + strandat 428.471 kb on + strandat 428.494 kb on + strandat 428.531 kb on + strandat 428.577 kb on + strandat 428.625 kb on - strandat 428.651 kb on - strandat 428.679 kb on + strandat 428.700 kb on - strandat 428.734 kb on - strandat 428.734 kb on - strandat 428.948 kb on - strandat 429.013 kb on + strand, within HMPREF1058_RS06645at 429.017 kb on + strand, within HMPREF1058_RS06645at 429.017 kb on + strand, within HMPREF1058_RS06645at 429.035 kb on - strand, within HMPREF1058_RS06645at 429.110 kb on + strand, within HMPREF1058_RS06645at 429.194 kb on - strand, within HMPREF1058_RS06645at 429.229 kb on + strand, within HMPREF1058_RS06645at 429.229 kb on + strand, within HMPREF1058_RS06645at 429.234 kb on - strand, within HMPREF1058_RS06645at 429.269 kb on - strand, within HMPREF1058_RS06645at 429.367 kb on + strand, within HMPREF1058_RS06645at 429.386 kb on + strand, within HMPREF1058_RS06645at 429.386 kb on + strand, within HMPREF1058_RS06645at 429.394 kb on + strand, within HMPREF1058_RS06645at 429.413 kb on + strand, within HMPREF1058_RS06645at 429.460 kb on + strand, within HMPREF1058_RS06645

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7
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426,236 + HMPREF1058_RS06655 0.44 -1.3
426,380 + HMPREF1058_RS06655 0.54 -0.7
426,380 + HMPREF1058_RS06655 0.54 +0.1
426,381 - HMPREF1058_RS06655 0.54 -1.1
426,381 - HMPREF1058_RS06655 0.54 -1.5
426,381 - HMPREF1058_RS06655 0.54 -2.3
426,381 - HMPREF1058_RS06655 0.54 -2.1
426,382 + HMPREF1058_RS06655 0.54 -0.9
426,383 - HMPREF1058_RS06655 0.54 -2.7
426,443 + HMPREF1058_RS06655 0.58 -1.5
426,526 - HMPREF1058_RS06655 0.63 -0.5
426,538 + HMPREF1058_RS06655 0.64 +0.7
426,551 - HMPREF1058_RS06655 0.65 -0.7
426,558 + HMPREF1058_RS06655 0.66 -3.1
426,636 + HMPREF1058_RS06655 0.71 +0.1
426,666 + HMPREF1058_RS06655 0.73 -2.4
426,666 + HMPREF1058_RS06655 0.73 -2.1
426,666 + HMPREF1058_RS06655 0.73 +0.7
426,668 + HMPREF1058_RS06655 0.73 -0.9
426,668 + HMPREF1058_RS06655 0.73 +3.5
426,669 - HMPREF1058_RS06655 0.73 +0.3
426,669 - HMPREF1058_RS06655 0.73 -0.6
426,669 - HMPREF1058_RS06655 0.73 -0.1
426,705 + HMPREF1058_RS06655 0.75 -0.9
426,706 - HMPREF1058_RS06655 0.76 -2.3
426,814 - HMPREF1058_RS06655 0.83 -1.5
426,814 - HMPREF1058_RS06655 0.83 -0.3
426,828 + HMPREF1058_RS06655 0.84 -0.7
426,866 + HMPREF1058_RS06655 0.86 -1.2
426,934 + -0.3
426,937 - -0.3
427,024 + -2.7
427,025 - -1.5
427,025 - -2.7
427,142 + -0.1
427,192 - -0.3
427,247 + +0.3
427,318 + HMPREF1058_RS06650 0.12 -2.6
427,318 + HMPREF1058_RS06650 0.12 +0.7
427,318 + HMPREF1058_RS06650 0.12 +0.8
427,461 - HMPREF1058_RS06650 0.23 -0.3
427,512 - HMPREF1058_RS06650 0.26 +1.7
427,533 + HMPREF1058_RS06650 0.28 +2.1
427,617 - HMPREF1058_RS06650 0.34 -0.9
427,748 + HMPREF1058_RS06650 0.44 -0.7
427,750 + HMPREF1058_RS06650 0.45 -2.1
427,843 + HMPREF1058_RS06650 0.52 -0.9
427,844 - HMPREF1058_RS06650 0.52 +0.0
427,895 + HMPREF1058_RS06650 0.56 -2.8
427,985 - HMPREF1058_RS06650 0.62 +1.0
428,000 - HMPREF1058_RS06650 0.64 -2.0
428,207 - HMPREF1058_RS06650 0.79 -0.3
428,328 - HMPREF1058_RS06650 0.88 -3.5
428,392 - -1.3
428,392 - -0.6
428,430 + -3.3
428,430 + -1.9
428,463 + -3.6
428,467 + -0.0
428,467 + -1.3
428,471 + -1.5
428,471 + -0.9
428,494 + +0.7
428,531 + +0.8
428,577 + -1.3
428,625 - -0.3
428,651 - -4.8
428,679 + +1.3
428,700 - -3.2
428,734 - -0.9
428,734 - -0.3
428,948 - -2.3
429,013 + HMPREF1058_RS06645 0.12 -0.9
429,017 + HMPREF1058_RS06645 0.12 -2.3
429,017 + HMPREF1058_RS06645 0.12 -1.7
429,035 - HMPREF1058_RS06645 0.13 -3.2
429,110 + HMPREF1058_RS06645 0.16 -3.0
429,194 - HMPREF1058_RS06645 0.19 -2.7
429,229 + HMPREF1058_RS06645 0.20 -3.4
429,229 + HMPREF1058_RS06645 0.20 -0.9
429,234 - HMPREF1058_RS06645 0.21 -1.9
429,269 - HMPREF1058_RS06645 0.22 -3.7
429,367 + HMPREF1058_RS06645 0.26 -3.9
429,386 + HMPREF1058_RS06645 0.27 -2.7
429,386 + HMPREF1058_RS06645 0.27 -3.6
429,394 + HMPREF1058_RS06645 0.27 -1.3
429,413 + HMPREF1058_RS06645 0.28 -1.7
429,460 + HMPREF1058_RS06645 0.30 -3.1

Or see this region's nucleotide sequence