Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17195 and HMPREF1058_RS17190 overlap by 53 nucleotides HMPREF1058_RS17190 and HMPREF1058_RS17185 are separated by 3 nucleotides HMPREF1058_RS17185 and HMPREF1058_RS17180 are separated by 13 nucleotides
HMPREF1058_RS17195: HMPREF1058_RS17195 - hypothetical protein, at 506,063 to 506,611
_RS17195
HMPREF1058_RS17190: HMPREF1058_RS17190 - hypothetical protein, at 506,559 to 507,260
_RS17190
HMPREF1058_RS17185: HMPREF1058_RS17185 - manganese efflux pump, at 507,264 to 507,836
_RS17185
HMPREF1058_RS17180: HMPREF1058_RS17180 - FAD:protein FMN transferase, at 507,850 to 508,866
_RS17180
Position (kb) 507
508 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 506.369 kb on + strand, within HMPREF1058_RS17195 at 506.450 kb on + strand, within HMPREF1058_RS17195 at 506.463 kb on + strand, within HMPREF1058_RS17195 at 506.516 kb on + strand, within HMPREF1058_RS17195 at 506.696 kb on + strand, within HMPREF1058_RS17190 at 506.696 kb on + strand, within HMPREF1058_RS17190 at 506.750 kb on + strand, within HMPREF1058_RS17190 at 506.750 kb on + strand, within HMPREF1058_RS17190 at 506.852 kb on + strand, within HMPREF1058_RS17190 at 506.854 kb on + strand, within HMPREF1058_RS17190 at 506.854 kb on + strand, within HMPREF1058_RS17190 at 506.938 kb on + strand, within HMPREF1058_RS17190 at 506.983 kb on + strand, within HMPREF1058_RS17190 at 507.039 kb on + strand, within HMPREF1058_RS17190 at 507.094 kb on + strand, within HMPREF1058_RS17190 at 507.243 kb on + strand at 507.341 kb on + strand, within HMPREF1058_RS17185 at 507.512 kb on + strand, within HMPREF1058_RS17185 at 507.590 kb on + strand, within HMPREF1058_RS17185 at 507.623 kb on + strand, within HMPREF1058_RS17185 at 507.646 kb on + strand, within HMPREF1058_RS17185 at 507.646 kb on + strand, within HMPREF1058_RS17185 at 507.662 kb on + strand, within HMPREF1058_RS17185 at 507.733 kb on + strand, within HMPREF1058_RS17185
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 remove 506,369 + HMPREF1058_RS17195 0.56 -2.5 506,450 + HMPREF1058_RS17195 0.70 -1.7 506,463 + HMPREF1058_RS17195 0.73 -2.0 506,516 + HMPREF1058_RS17195 0.83 +0.6 506,696 + HMPREF1058_RS17190 0.20 +0.2 506,696 + HMPREF1058_RS17190 0.20 +1.6 506,750 + HMPREF1058_RS17190 0.27 -0.4 506,750 + HMPREF1058_RS17190 0.27 -2.3 506,852 + HMPREF1058_RS17190 0.42 +0.2 506,854 + HMPREF1058_RS17190 0.42 +0.6 506,854 + HMPREF1058_RS17190 0.42 +0.1 506,938 + HMPREF1058_RS17190 0.54 -0.2 506,983 + HMPREF1058_RS17190 0.60 -1.6 507,039 + HMPREF1058_RS17190 0.68 +0.6 507,094 + HMPREF1058_RS17190 0.76 -0.4 507,243 + -0.7 507,341 + HMPREF1058_RS17185 0.13 +0.2 507,512 + HMPREF1058_RS17185 0.43 -0.3 507,590 + HMPREF1058_RS17185 0.57 +0.5 507,623 + HMPREF1058_RS17185 0.63 +0.4 507,646 + HMPREF1058_RS17185 0.67 -0.1 507,646 + HMPREF1058_RS17185 0.67 +0.3 507,662 + HMPREF1058_RS17185 0.69 +1.6 507,733 + HMPREF1058_RS17185 0.82 -3.2
Or see this region's nucleotide sequence