Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17010 and HMPREF1058_RS17005 are separated by 837 nucleotides HMPREF1058_RS17005 and HMPREF1058_RS17000 are separated by 233 nucleotides HMPREF1058_RS17000 and HMPREF1058_RS16995 are separated by 25 nucleotides
HMPREF1058_RS17010: HMPREF1058_RS17010 - MFS transporter, at 539,809 to 541,083
_RS17010
HMPREF1058_RS17005: HMPREF1058_RS17005 - DUF4251 domain-containing protein, at 541,921 to 542,475
_RS17005
HMPREF1058_RS17000: HMPREF1058_RS17000 - DUF4251 domain-containing protein, at 542,709 to 543,266
_RS17000
HMPREF1058_RS16995: HMPREF1058_RS16995 - DUF4136 domain-containing protein, at 543,292 to 543,924
_RS16995
Position (kb) 541
542
543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 540.930 kb on - strand, within HMPREF1058_RS17010 at 541.006 kb on - strand at 541.011 kb on - strand at 541.164 kb on + strand at 541.168 kb on + strand at 541.168 kb on + strand at 541.196 kb on - strand at 541.267 kb on + strand at 541.609 kb on - strand at 541.630 kb on - strand at 541.642 kb on + strand at 541.642 kb on + strand at 541.675 kb on - strand at 541.686 kb on + strand at 541.686 kb on + strand at 541.690 kb on + strand at 541.690 kb on + strand at 541.690 kb on + strand at 541.690 kb on + strand at 541.691 kb on - strand at 541.691 kb on - strand at 541.694 kb on + strand at 541.694 kb on + strand at 541.715 kb on + strand at 541.715 kb on + strand at 541.810 kb on - strand at 541.810 kb on - strand at 541.816 kb on + strand at 541.817 kb on - strand at 541.827 kb on - strand at 541.892 kb on - strand at 541.914 kb on + strand at 541.918 kb on + strand at 541.918 kb on + strand at 541.918 kb on + strand at 541.918 kb on + strand at 541.918 kb on + strand at 541.919 kb on - strand at 541.919 kb on - strand at 541.919 kb on - strand at 541.919 kb on - strand at 541.919 kb on - strand at 541.920 kb on + strand at 541.933 kb on - strand at 541.937 kb on + strand at 541.938 kb on - strand at 542.034 kb on + strand, within HMPREF1058_RS17005 at 542.115 kb on + strand, within HMPREF1058_RS17005 at 542.145 kb on + strand, within HMPREF1058_RS17005 at 542.166 kb on - strand, within HMPREF1058_RS17005 at 542.295 kb on - strand, within HMPREF1058_RS17005 at 542.313 kb on - strand, within HMPREF1058_RS17005 at 542.325 kb on + strand, within HMPREF1058_RS17005 at 542.326 kb on - strand, within HMPREF1058_RS17005 at 542.383 kb on - strand, within HMPREF1058_RS17005 at 542.385 kb on - strand, within HMPREF1058_RS17005 at 542.483 kb on - strand at 542.485 kb on - strand at 542.628 kb on + strand at 542.701 kb on + strand at 542.706 kb on - strand at 542.728 kb on + strand at 542.729 kb on - strand at 542.734 kb on + strand at 543.083 kb on + strand, within HMPREF1058_RS17000 at 543.083 kb on + strand, within HMPREF1058_RS17000 at 543.083 kb on + strand, within HMPREF1058_RS17000 at 543.084 kb on - strand, within HMPREF1058_RS17000 at 543.084 kb on - strand, within HMPREF1058_RS17000 at 543.096 kb on - strand, within HMPREF1058_RS17000 at 543.170 kb on - strand, within HMPREF1058_RS17000 at 543.264 kb on + strand at 543.264 kb on + strand at 543.270 kb on - strand at 543.383 kb on - strand, within HMPREF1058_RS16995 at 543.392 kb on - strand, within HMPREF1058_RS16995
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 remove 540,930 - HMPREF1058_RS17010 0.88 +0.6 541,006 - -3.4 541,011 - +1.8 541,164 + +0.9 541,168 + -1.6 541,168 + +1.2 541,196 - -2.0 541,267 + -0.5 541,609 - +1.2 541,630 - +2.0 541,642 + +0.8 541,642 + +0.5 541,675 - -1.0 541,686 + +0.4 541,686 + -2.6 541,690 + -1.4 541,690 + +0.2 541,690 + +0.2 541,690 + +1.7 541,691 - +0.2 541,691 - -2.4 541,694 + +0.3 541,694 + -1.7 541,715 + -2.2 541,715 + -0.7 541,810 - +0.8 541,810 - -0.4 541,816 + +0.8 541,817 - +2.6 541,827 - -1.5 541,892 - +1.9 541,914 + +1.6 541,918 + +2.4 541,918 + -1.4 541,918 + +1.1 541,918 + +1.6 541,918 + -1.1 541,919 - +0.9 541,919 - +1.1 541,919 - -2.0 541,919 - -0.4 541,919 - -2.4 541,920 + -0.6 541,933 - +1.5 541,937 + +1.5 541,938 - -0.5 542,034 + HMPREF1058_RS17005 0.20 +0.4 542,115 + HMPREF1058_RS17005 0.35 +1.3 542,145 + HMPREF1058_RS17005 0.40 -0.4 542,166 - HMPREF1058_RS17005 0.44 +1.7 542,295 - HMPREF1058_RS17005 0.67 -0.4 542,313 - HMPREF1058_RS17005 0.71 -1.6 542,325 + HMPREF1058_RS17005 0.73 -0.8 542,326 - HMPREF1058_RS17005 0.73 +0.5 542,383 - HMPREF1058_RS17005 0.83 +0.2 542,385 - HMPREF1058_RS17005 0.84 +1.7 542,483 - +0.7 542,485 - -0.5 542,628 + -0.9 542,701 + +1.5 542,706 - +0.5 542,728 + +0.7 542,729 - -0.6 542,734 + +3.4 543,083 + HMPREF1058_RS17000 0.67 +2.1 543,083 + HMPREF1058_RS17000 0.67 -1.4 543,083 + HMPREF1058_RS17000 0.67 +0.6 543,084 - HMPREF1058_RS17000 0.67 +0.4 543,084 - HMPREF1058_RS17000 0.67 -0.4 543,096 - HMPREF1058_RS17000 0.69 +0.0 543,170 - HMPREF1058_RS17000 0.83 -0.4 543,264 + +0.6 543,264 + -1.6 543,270 - -1.0 543,383 - HMPREF1058_RS16995 0.14 -0.6 543,392 - HMPREF1058_RS16995 0.16 -2.5
Or see this region's nucleotide sequence