Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15220

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15225 and HMPREF1058_RS15220 are separated by 127 nucleotidesHMPREF1058_RS15220 and HMPREF1058_RS15215 overlap by 4 nucleotides HMPREF1058_RS15225: HMPREF1058_RS15225 - phenylalanine--tRNA ligase subunit alpha, at 970,429 to 971,463 _RS15225 HMPREF1058_RS15220: HMPREF1058_RS15220 - MFS transporter, at 971,591 to 972,787 _RS15220 HMPREF1058_RS15215: HMPREF1058_RS15215 - hypothetical protein, at 972,784 to 973,926 _RS15215 Position (kb) 971 972 973Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 971.464 kb on + strandat 971.535 kb on + strandat 971.551 kb on + strandat 971.562 kb on + strandat 971.563 kb on - strandat 971.573 kb on - strandat 971.584 kb on - strandat 971.623 kb on - strandat 971.623 kb on - strandat 971.628 kb on + strandat 971.629 kb on - strandat 971.629 kb on - strandat 971.736 kb on + strand, within HMPREF1058_RS15220at 971.769 kb on + strand, within HMPREF1058_RS15220at 971.770 kb on - strand, within HMPREF1058_RS15220at 971.797 kb on + strand, within HMPREF1058_RS15220at 971.797 kb on + strand, within HMPREF1058_RS15220at 971.861 kb on + strand, within HMPREF1058_RS15220at 971.887 kb on - strand, within HMPREF1058_RS15220at 971.890 kb on + strand, within HMPREF1058_RS15220at 971.907 kb on + strand, within HMPREF1058_RS15220at 971.963 kb on - strand, within HMPREF1058_RS15220at 972.000 kb on - strand, within HMPREF1058_RS15220at 972.019 kb on + strand, within HMPREF1058_RS15220at 972.019 kb on + strand, within HMPREF1058_RS15220at 972.021 kb on + strand, within HMPREF1058_RS15220at 972.021 kb on + strand, within HMPREF1058_RS15220at 972.021 kb on + strand, within HMPREF1058_RS15220at 972.021 kb on + strand, within HMPREF1058_RS15220at 972.022 kb on - strand, within HMPREF1058_RS15220at 972.022 kb on - strand, within HMPREF1058_RS15220at 972.079 kb on + strand, within HMPREF1058_RS15220at 972.080 kb on - strand, within HMPREF1058_RS15220at 972.080 kb on - strand, within HMPREF1058_RS15220at 972.102 kb on + strand, within HMPREF1058_RS15220at 972.152 kb on + strand, within HMPREF1058_RS15220at 972.237 kb on + strand, within HMPREF1058_RS15220at 972.238 kb on - strand, within HMPREF1058_RS15220at 972.295 kb on - strand, within HMPREF1058_RS15220at 972.420 kb on - strand, within HMPREF1058_RS15220at 972.614 kb on + strand, within HMPREF1058_RS15220at 972.615 kb on - strand, within HMPREF1058_RS15220at 972.633 kb on + strand, within HMPREF1058_RS15220at 972.634 kb on - strand, within HMPREF1058_RS15220at 972.634 kb on - strand, within HMPREF1058_RS15220at 972.665 kb on + strand, within HMPREF1058_RS15220at 972.667 kb on + strand, within HMPREF1058_RS15220at 972.667 kb on + strand, within HMPREF1058_RS15220at 972.667 kb on + strand, within HMPREF1058_RS15220at 972.698 kb on + strandat 972.703 kb on - strandat 972.724 kb on + strandat 972.724 kb on + strandat 972.775 kb on + strandat 972.775 kb on + strandat 972.776 kb on - strandat 972.792 kb on + strandat 972.793 kb on - strandat 972.794 kb on + strandat 972.795 kb on - strandat 972.795 kb on - strandat 972.902 kb on + strand, within HMPREF1058_RS15215at 972.957 kb on + strand, within HMPREF1058_RS15215at 972.957 kb on + strand, within HMPREF1058_RS15215at 972.982 kb on - strand, within HMPREF1058_RS15215at 973.077 kb on + strand, within HMPREF1058_RS15215at 973.078 kb on - strand, within HMPREF1058_RS15215at 973.087 kb on + strand, within HMPREF1058_RS15215at 973.088 kb on - strand, within HMPREF1058_RS15215at 973.099 kb on - strand, within HMPREF1058_RS15215at 973.156 kb on - strand, within HMPREF1058_RS15215at 973.169 kb on + strand, within HMPREF1058_RS15215at 973.170 kb on - strand, within HMPREF1058_RS15215at 973.272 kb on + strand, within HMPREF1058_RS15215at 973.273 kb on - strand, within HMPREF1058_RS15215at 973.409 kb on + strand, within HMPREF1058_RS15215at 973.410 kb on - strand, within HMPREF1058_RS15215at 973.466 kb on + strand, within HMPREF1058_RS15215at 973.466 kb on + strand, within HMPREF1058_RS15215at 973.557 kb on - strand, within HMPREF1058_RS15215at 973.557 kb on - strand, within HMPREF1058_RS15215at 973.618 kb on - strand, within HMPREF1058_RS15215at 973.647 kb on + strand, within HMPREF1058_RS15215at 973.678 kb on - strand, within HMPREF1058_RS15215at 973.718 kb on + strand, within HMPREF1058_RS15215at 973.752 kb on + strand, within HMPREF1058_RS15215at 973.752 kb on + strand, within HMPREF1058_RS15215at 973.753 kb on - strand, within HMPREF1058_RS15215at 973.755 kb on + strand, within HMPREF1058_RS15215

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6
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971,464 + -0.8
971,535 + +1.9
971,551 + -1.4
971,562 + +0.4
971,563 - -0.1
971,573 - -1.0
971,584 - -1.1
971,623 - -0.9
971,623 - -2.7
971,628 + +1.6
971,629 - -3.7
971,629 - +1.1
971,736 + HMPREF1058_RS15220 0.12 -0.5
971,769 + HMPREF1058_RS15220 0.15 -1.0
971,770 - HMPREF1058_RS15220 0.15 +0.1
971,797 + HMPREF1058_RS15220 0.17 +2.9
971,797 + HMPREF1058_RS15220 0.17 +0.4
971,861 + HMPREF1058_RS15220 0.23 +1.5
971,887 - HMPREF1058_RS15220 0.25 -0.1
971,890 + HMPREF1058_RS15220 0.25 -0.3
971,907 + HMPREF1058_RS15220 0.26 +0.5
971,963 - HMPREF1058_RS15220 0.31 -0.1
972,000 - HMPREF1058_RS15220 0.34 +0.9
972,019 + HMPREF1058_RS15220 0.36 -0.4
972,019 + HMPREF1058_RS15220 0.36 -1.4
972,021 + HMPREF1058_RS15220 0.36 -0.5
972,021 + HMPREF1058_RS15220 0.36 -2.2
972,021 + HMPREF1058_RS15220 0.36 +2.2
972,021 + HMPREF1058_RS15220 0.36 +1.2
972,022 - HMPREF1058_RS15220 0.36 +2.4
972,022 - HMPREF1058_RS15220 0.36 +0.7
972,079 + HMPREF1058_RS15220 0.41 +2.2
972,080 - HMPREF1058_RS15220 0.41 -2.3
972,080 - HMPREF1058_RS15220 0.41 +1.1
972,102 + HMPREF1058_RS15220 0.43 -1.4
972,152 + HMPREF1058_RS15220 0.47 -0.9
972,237 + HMPREF1058_RS15220 0.54 +0.6
972,238 - HMPREF1058_RS15220 0.54 -0.2
972,295 - HMPREF1058_RS15220 0.59 +0.3
972,420 - HMPREF1058_RS15220 0.69 +0.9
972,614 + HMPREF1058_RS15220 0.85 +2.9
972,615 - HMPREF1058_RS15220 0.86 -0.4
972,633 + HMPREF1058_RS15220 0.87 -0.7
972,634 - HMPREF1058_RS15220 0.87 -0.5
972,634 - HMPREF1058_RS15220 0.87 -0.4
972,665 + HMPREF1058_RS15220 0.90 +0.5
972,667 + HMPREF1058_RS15220 0.90 +0.1
972,667 + HMPREF1058_RS15220 0.90 +0.1
972,667 + HMPREF1058_RS15220 0.90 +0.4
972,698 + -0.8
972,703 - -0.8
972,724 + +1.3
972,724 + +0.9
972,775 + +4.6
972,775 + +2.2
972,776 - +0.6
972,792 + +1.2
972,793 - +1.2
972,794 + +2.5
972,795 - +0.1
972,795 - -0.1
972,902 + HMPREF1058_RS15215 0.10 +1.9
972,957 + HMPREF1058_RS15215 0.15 -0.8
972,957 + HMPREF1058_RS15215 0.15 +2.6
972,982 - HMPREF1058_RS15215 0.17 +1.7
973,077 + HMPREF1058_RS15215 0.26 -2.4
973,078 - HMPREF1058_RS15215 0.26 +0.2
973,087 + HMPREF1058_RS15215 0.27 -1.4
973,088 - HMPREF1058_RS15215 0.27 +0.6
973,099 - HMPREF1058_RS15215 0.28 +1.8
973,156 - HMPREF1058_RS15215 0.33 +0.9
973,169 + HMPREF1058_RS15215 0.34 +3.9
973,170 - HMPREF1058_RS15215 0.34 -0.8
973,272 + HMPREF1058_RS15215 0.43 +1.8
973,273 - HMPREF1058_RS15215 0.43 +0.1
973,409 + HMPREF1058_RS15215 0.55 -0.0
973,410 - HMPREF1058_RS15215 0.55 +2.6
973,466 + HMPREF1058_RS15215 0.60 +0.9
973,466 + HMPREF1058_RS15215 0.60 -0.7
973,557 - HMPREF1058_RS15215 0.68 +1.9
973,557 - HMPREF1058_RS15215 0.68 +0.3
973,618 - HMPREF1058_RS15215 0.73 +0.6
973,647 + HMPREF1058_RS15215 0.76 +2.2
973,678 - HMPREF1058_RS15215 0.78 +1.1
973,718 + HMPREF1058_RS15215 0.82 +0.6
973,752 + HMPREF1058_RS15215 0.85 +1.6
973,752 + HMPREF1058_RS15215 0.85 +2.4
973,753 - HMPREF1058_RS15215 0.85 +0.6
973,755 + HMPREF1058_RS15215 0.85 +1.0

Or see this region's nucleotide sequence