Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS13920 and HMPREF1058_RS13915 are separated by 52 nucleotides HMPREF1058_RS13915 and HMPREF1058_RS13910 are separated by 3 nucleotides HMPREF1058_RS13910 and HMPREF1058_RS13905 are separated by 1 nucleotides HMPREF1058_RS13905 and HMPREF1058_RS13900 are separated by 75 nucleotides HMPREF1058_RS13900 and HMPREF1058_RS13895 are separated by 17 nucleotides HMPREF1058_RS13895 and HMPREF1058_RS13890 overlap by 17 nucleotides
HMPREF1058_RS13920: HMPREF1058_RS13920 - CDP-alcohol phosphatidyltransferase family protein, at 1,327,483 to 1,328,190
_RS13920
HMPREF1058_RS13915: HMPREF1058_RS13915 - DUF4834 family protein, at 1,328,243 to 1,328,545
_RS13915
HMPREF1058_RS13910: HMPREF1058_RS13910 - nucleoside deaminase, at 1,328,549 to 1,328,983
_RS13910
HMPREF1058_RS13905: HMPREF1058_RS13905 - hypothetical protein, at 1,328,985 to 1,329,218
_RS13905
HMPREF1058_RS13900: HMPREF1058_RS13900 - YraN family protein, at 1,329,294 to 1,329,659
_RS13900
HMPREF1058_RS13895: HMPREF1058_RS13895 - MmcQ/YjbR family DNA-binding protein, at 1,329,677 to 1,330,033
_RS13895
HMPREF1058_RS13890: HMPREF1058_RS13890 - biotin--[acetyl-CoA-carboxylase] ligase, at 1,330,017 to 1,330,784
_RS13890
Position (kb) 1328
1329
1330 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 1328.223 kb on - strand at 1328.223 kb on - strand at 1328.242 kb on + strand at 1328.242 kb on + strand at 1328.243 kb on - strand at 1328.265 kb on + strand at 1328.307 kb on + strand, within HMPREF1058_RS13915 at 1328.307 kb on + strand, within HMPREF1058_RS13915 at 1328.328 kb on + strand, within HMPREF1058_RS13915 at 1328.374 kb on + strand, within HMPREF1058_RS13915 at 1328.374 kb on + strand, within HMPREF1058_RS13915 at 1328.392 kb on + strand, within HMPREF1058_RS13915 at 1328.396 kb on + strand, within HMPREF1058_RS13915 at 1328.396 kb on + strand, within HMPREF1058_RS13915 at 1328.397 kb on - strand, within HMPREF1058_RS13915 at 1328.397 kb on - strand, within HMPREF1058_RS13915 at 1328.397 kb on - strand, within HMPREF1058_RS13915 at 1328.461 kb on + strand, within HMPREF1058_RS13915 at 1328.461 kb on + strand, within HMPREF1058_RS13915 at 1328.520 kb on - strand at 1328.523 kb on + strand at 1328.523 kb on + strand at 1328.524 kb on - strand at 1328.528 kb on + strand at 1328.603 kb on + strand, within HMPREF1058_RS13910 at 1328.650 kb on - strand, within HMPREF1058_RS13910 at 1328.755 kb on - strand, within HMPREF1058_RS13910 at 1328.755 kb on - strand, within HMPREF1058_RS13910 at 1328.791 kb on + strand, within HMPREF1058_RS13910 at 1328.833 kb on + strand, within HMPREF1058_RS13910 at 1328.834 kb on - strand, within HMPREF1058_RS13910 at 1328.962 kb on + strand at 1328.964 kb on + strand at 1328.964 kb on + strand at 1328.965 kb on - strand at 1328.967 kb on + strand at 1328.968 kb on - strand at 1328.968 kb on - strand at 1329.017 kb on + strand, within HMPREF1058_RS13905 at 1329.017 kb on + strand, within HMPREF1058_RS13905 at 1329.023 kb on - strand, within HMPREF1058_RS13905 at 1329.048 kb on - strand, within HMPREF1058_RS13905 at 1329.057 kb on + strand, within HMPREF1058_RS13905 at 1329.126 kb on + strand, within HMPREF1058_RS13905 at 1329.156 kb on - strand, within HMPREF1058_RS13905 at 1329.352 kb on + strand, within HMPREF1058_RS13900 at 1329.352 kb on + strand, within HMPREF1058_RS13900 at 1329.496 kb on + strand, within HMPREF1058_RS13900 at 1329.619 kb on + strand, within HMPREF1058_RS13900 at 1329.669 kb on + strand at 1329.669 kb on + strand at 1329.672 kb on + strand at 1329.676 kb on + strand at 1329.756 kb on + strand, within HMPREF1058_RS13895 at 1329.756 kb on + strand, within HMPREF1058_RS13895 at 1329.782 kb on + strand, within HMPREF1058_RS13895 at 1329.921 kb on + strand, within HMPREF1058_RS13895
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 remove 1,328,223 - +0.6 1,328,223 - -2.0 1,328,242 + -0.6 1,328,242 + -0.8 1,328,243 - +0.9 1,328,265 + +1.5 1,328,307 + HMPREF1058_RS13915 0.21 -1.9 1,328,307 + HMPREF1058_RS13915 0.21 -1.5 1,328,328 + HMPREF1058_RS13915 0.28 -0.3 1,328,374 + HMPREF1058_RS13915 0.43 +0.6 1,328,374 + HMPREF1058_RS13915 0.43 +0.4 1,328,392 + HMPREF1058_RS13915 0.49 -0.9 1,328,396 + HMPREF1058_RS13915 0.50 +2.5 1,328,396 + HMPREF1058_RS13915 0.50 +0.4 1,328,397 - HMPREF1058_RS13915 0.51 +0.1 1,328,397 - HMPREF1058_RS13915 0.51 +1.1 1,328,397 - HMPREF1058_RS13915 0.51 +0.6 1,328,461 + HMPREF1058_RS13915 0.72 -2.6 1,328,461 + HMPREF1058_RS13915 0.72 -0.1 1,328,520 - +1.9 1,328,523 + +0.6 1,328,523 + +0.2 1,328,524 - -0.8 1,328,528 + +2.3 1,328,603 + HMPREF1058_RS13910 0.12 -4.9 1,328,650 - HMPREF1058_RS13910 0.23 -2.2 1,328,755 - HMPREF1058_RS13910 0.47 -1.2 1,328,755 - HMPREF1058_RS13910 0.47 -1.6 1,328,791 + HMPREF1058_RS13910 0.56 -5.9 1,328,833 + HMPREF1058_RS13910 0.65 -3.1 1,328,834 - HMPREF1058_RS13910 0.66 -1.9 1,328,962 + -1.6 1,328,964 + -1.2 1,328,964 + -2.8 1,328,965 - -2.6 1,328,967 + -3.5 1,328,968 - -4.3 1,328,968 - -4.9 1,329,017 + HMPREF1058_RS13905 0.14 -1.2 1,329,017 + HMPREF1058_RS13905 0.14 -4.0 1,329,023 - HMPREF1058_RS13905 0.16 +0.2 1,329,048 - HMPREF1058_RS13905 0.27 +0.5 1,329,057 + HMPREF1058_RS13905 0.31 -6.1 1,329,126 + HMPREF1058_RS13905 0.60 -2.9 1,329,156 - HMPREF1058_RS13905 0.73 -1.6 1,329,352 + HMPREF1058_RS13900 0.16 -2.6 1,329,352 + HMPREF1058_RS13900 0.16 +1.1 1,329,496 + HMPREF1058_RS13900 0.55 +2.4 1,329,619 + HMPREF1058_RS13900 0.89 -0.1 1,329,669 + -1.2 1,329,669 + +0.5 1,329,672 + -1.4 1,329,676 + +0.0 1,329,756 + HMPREF1058_RS13895 0.22 +2.1 1,329,756 + HMPREF1058_RS13895 0.22 +0.1 1,329,782 + HMPREF1058_RS13895 0.29 -1.2 1,329,921 + HMPREF1058_RS13895 0.68 -0.7
Or see this region's nucleotide sequence