Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12890 and HMPREF1058_RS12885 overlap by 38 nucleotides HMPREF1058_RS12885 and HMPREF1058_RS12880 are separated by 4 nucleotides HMPREF1058_RS12880 and HMPREF1058_RS12875 are separated by 117 nucleotides HMPREF1058_RS12875 and HMPREF1058_RS12870 are separated by 322 nucleotides HMPREF1058_RS12870 and HMPREF1058_RS12865 are separated by 10 nucleotides
HMPREF1058_RS12890: HMPREF1058_RS12890 - tetraacyldisaccharide 4'-kinase, at 11,092 to 12,192
_RS12890
HMPREF1058_RS12885: HMPREF1058_RS12885 - purine-nucleoside phosphorylase, at 12,155 to 12,964
_RS12885
HMPREF1058_RS12880: HMPREF1058_RS12880 - thiamine-phosphate kinase, at 12,969 to 14,009
_RS12880
HMPREF1058_RS12875: HMPREF1058_RS12875 - tRNA-Phe, at 14,127 to 14,199
_RS12875
HMPREF1058_RS12870: HMPREF1058_RS12870 - transposase family protein, at 14,522 to 14,872
_RS12870
HMPREF1058_RS12865: HMPREF1058_RS12865 - transposase, at 14,883 to 15,887
_RS12865
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 12.226 kb on + strand at 12.228 kb on + strand at 12.253 kb on - strand, within HMPREF1058_RS12885 at 12.275 kb on + strand, within HMPREF1058_RS12885 at 12.301 kb on + strand, within HMPREF1058_RS12885 at 12.331 kb on + strand, within HMPREF1058_RS12885 at 12.357 kb on + strand, within HMPREF1058_RS12885 at 12.379 kb on + strand, within HMPREF1058_RS12885 at 12.497 kb on - strand, within HMPREF1058_RS12885 at 12.544 kb on + strand, within HMPREF1058_RS12885 at 12.545 kb on - strand, within HMPREF1058_RS12885 at 12.693 kb on + strand, within HMPREF1058_RS12885 at 12.695 kb on + strand, within HMPREF1058_RS12885 at 12.696 kb on - strand, within HMPREF1058_RS12885 at 12.698 kb on - strand, within HMPREF1058_RS12885 at 12.775 kb on + strand, within HMPREF1058_RS12885 at 12.775 kb on + strand, within HMPREF1058_RS12885 at 12.775 kb on + strand, within HMPREF1058_RS12885 at 12.938 kb on - strand at 13.022 kb on + strand at 13.117 kb on + strand, within HMPREF1058_RS12880 at 13.150 kb on + strand, within HMPREF1058_RS12880 at 13.169 kb on + strand, within HMPREF1058_RS12880 at 13.193 kb on + strand, within HMPREF1058_RS12880 at 13.207 kb on + strand, within HMPREF1058_RS12880 at 13.224 kb on + strand, within HMPREF1058_RS12880 at 13.336 kb on + strand, within HMPREF1058_RS12880 at 13.337 kb on - strand, within HMPREF1058_RS12880 at 13.346 kb on - strand, within HMPREF1058_RS12880 at 13.346 kb on - strand, within HMPREF1058_RS12880 at 13.349 kb on + strand, within HMPREF1058_RS12880 at 13.400 kb on + strand, within HMPREF1058_RS12880 at 13.401 kb on - strand, within HMPREF1058_RS12880 at 13.409 kb on - strand, within HMPREF1058_RS12880 at 13.432 kb on + strand, within HMPREF1058_RS12880 at 13.457 kb on + strand, within HMPREF1058_RS12880 at 13.497 kb on + strand, within HMPREF1058_RS12880 at 13.498 kb on - strand, within HMPREF1058_RS12880 at 13.498 kb on - strand, within HMPREF1058_RS12880 at 13.500 kb on - strand, within HMPREF1058_RS12880 at 13.583 kb on + strand, within HMPREF1058_RS12880 at 13.706 kb on + strand, within HMPREF1058_RS12880 at 13.707 kb on - strand, within HMPREF1058_RS12880 at 13.707 kb on - strand, within HMPREF1058_RS12880 at 13.708 kb on + strand, within HMPREF1058_RS12880 at 13.708 kb on + strand, within HMPREF1058_RS12880 at 13.708 kb on + strand, within HMPREF1058_RS12880 at 13.709 kb on - strand, within HMPREF1058_RS12880 at 13.709 kb on - strand, within HMPREF1058_RS12880 at 13.709 kb on - strand, within HMPREF1058_RS12880 at 13.797 kb on - strand, within HMPREF1058_RS12880 at 13.819 kb on + strand, within HMPREF1058_RS12880 at 13.819 kb on + strand, within HMPREF1058_RS12880 at 13.844 kb on - strand, within HMPREF1058_RS12880 at 13.846 kb on + strand, within HMPREF1058_RS12880 at 13.850 kb on + strand, within HMPREF1058_RS12880 at 13.851 kb on - strand, within HMPREF1058_RS12880 at 14.042 kb on + strand at 14.287 kb on - strand at 14.287 kb on - strand at 14.287 kb on - strand at 14.304 kb on - strand at 14.452 kb on + strand at 14.452 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 remove 12,226 + -3.2 12,228 + -1.2 12,253 - HMPREF1058_RS12885 0.12 -2.4 12,275 + HMPREF1058_RS12885 0.15 -1.9 12,301 + HMPREF1058_RS12885 0.18 -2.2 12,331 + HMPREF1058_RS12885 0.22 -2.6 12,357 + HMPREF1058_RS12885 0.25 -3.7 12,379 + HMPREF1058_RS12885 0.28 -4.1 12,497 - HMPREF1058_RS12885 0.42 -2.2 12,544 + HMPREF1058_RS12885 0.48 -1.9 12,545 - HMPREF1058_RS12885 0.48 -0.6 12,693 + HMPREF1058_RS12885 0.66 -1.9 12,695 + HMPREF1058_RS12885 0.67 -2.3 12,696 - HMPREF1058_RS12885 0.67 -1.6 12,698 - HMPREF1058_RS12885 0.67 -3.0 12,775 + HMPREF1058_RS12885 0.77 -2.2 12,775 + HMPREF1058_RS12885 0.77 -2.4 12,775 + HMPREF1058_RS12885 0.77 -0.7 12,938 - -1.9 13,022 + -0.6 13,117 + HMPREF1058_RS12880 0.14 -3.8 13,150 + HMPREF1058_RS12880 0.17 -1.2 13,169 + HMPREF1058_RS12880 0.19 -2.7 13,193 + HMPREF1058_RS12880 0.22 -1.2 13,207 + HMPREF1058_RS12880 0.23 -1.9 13,224 + HMPREF1058_RS12880 0.24 -2.7 13,336 + HMPREF1058_RS12880 0.35 -1.6 13,337 - HMPREF1058_RS12880 0.35 +0.4 13,346 - HMPREF1058_RS12880 0.36 -2.9 13,346 - HMPREF1058_RS12880 0.36 -1.2 13,349 + HMPREF1058_RS12880 0.37 -4.5 13,400 + HMPREF1058_RS12880 0.41 -3.7 13,401 - HMPREF1058_RS12880 0.41 -4.2 13,409 - HMPREF1058_RS12880 0.42 -3.5 13,432 + HMPREF1058_RS12880 0.44 -2.1 13,457 + HMPREF1058_RS12880 0.47 -2.7 13,497 + HMPREF1058_RS12880 0.51 -3.8 13,498 - HMPREF1058_RS12880 0.51 -2.4 13,498 - HMPREF1058_RS12880 0.51 -1.9 13,500 - HMPREF1058_RS12880 0.51 -1.9 13,583 + HMPREF1058_RS12880 0.59 -3.6 13,706 + HMPREF1058_RS12880 0.71 -1.2 13,707 - HMPREF1058_RS12880 0.71 -2.9 13,707 - HMPREF1058_RS12880 0.71 -2.4 13,708 + HMPREF1058_RS12880 0.71 -1.9 13,708 + HMPREF1058_RS12880 0.71 -2.7 13,708 + HMPREF1058_RS12880 0.71 -0.6 13,709 - HMPREF1058_RS12880 0.71 -1.2 13,709 - HMPREF1058_RS12880 0.71 -1.2 13,709 - HMPREF1058_RS12880 0.71 -2.6 13,797 - HMPREF1058_RS12880 0.80 -2.6 13,819 + HMPREF1058_RS12880 0.82 -0.6 13,819 + HMPREF1058_RS12880 0.82 -0.6 13,844 - HMPREF1058_RS12880 0.84 -1.2 13,846 + HMPREF1058_RS12880 0.84 -3.3 13,850 + HMPREF1058_RS12880 0.85 -2.7 13,851 - HMPREF1058_RS12880 0.85 -1.6 14,042 + +1.6 14,287 - -0.6 14,287 - -2.2 14,287 - -2.0 14,304 - -0.6 14,452 + +0.2 14,452 + +1.1
Or see this region's nucleotide sequence