Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08070 and HMPREF1058_RS08065 are separated by 8 nucleotides HMPREF1058_RS08065 and HMPREF1058_RS08060 are separated by 51 nucleotides HMPREF1058_RS08060 and HMPREF1058_RS08055 are separated by 62 nucleotides
HMPREF1058_RS08070: HMPREF1058_RS08070 - alpha-L-fucosidase, at 60,905 to 62,944
_RS08070
HMPREF1058_RS08065: HMPREF1058_RS08065 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 62,953 to 63,855
_RS08065
HMPREF1058_RS08060: HMPREF1058_RS08060 - hypothetical protein, at 63,907 to 64,470
_RS08060
HMPREF1058_RS08055: HMPREF1058_RS08055 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 64,533 to 65,300
_RS08055
Position (kb) 62
63
64 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 62.206 kb on - strand, within HMPREF1058_RS08070 at 62.262 kb on - strand, within HMPREF1058_RS08070 at 62.266 kb on + strand, within HMPREF1058_RS08070 at 62.446 kb on + strand, within HMPREF1058_RS08070 at 62.475 kb on - strand, within HMPREF1058_RS08070 at 62.537 kb on + strand, within HMPREF1058_RS08070 at 62.575 kb on + strand, within HMPREF1058_RS08070 at 62.907 kb on - strand at 62.931 kb on - strand at 62.931 kb on - strand at 62.934 kb on - strand at 62.973 kb on + strand at 62.974 kb on - strand at 63.123 kb on - strand, within HMPREF1058_RS08065 at 63.140 kb on + strand, within HMPREF1058_RS08065 at 63.181 kb on + strand, within HMPREF1058_RS08065 at 63.182 kb on - strand, within HMPREF1058_RS08065 at 63.182 kb on - strand, within HMPREF1058_RS08065 at 63.182 kb on - strand, within HMPREF1058_RS08065 at 63.249 kb on - strand, within HMPREF1058_RS08065 at 63.350 kb on + strand, within HMPREF1058_RS08065 at 63.350 kb on + strand, within HMPREF1058_RS08065 at 63.350 kb on + strand, within HMPREF1058_RS08065 at 63.356 kb on - strand, within HMPREF1058_RS08065 at 63.370 kb on + strand, within HMPREF1058_RS08065 at 63.370 kb on + strand, within HMPREF1058_RS08065 at 63.371 kb on - strand, within HMPREF1058_RS08065 at 63.520 kb on + strand, within HMPREF1058_RS08065 at 63.541 kb on + strand, within HMPREF1058_RS08065 at 63.541 kb on + strand, within HMPREF1058_RS08065 at 63.541 kb on + strand, within HMPREF1058_RS08065 at 63.542 kb on - strand, within HMPREF1058_RS08065 at 63.542 kb on - strand, within HMPREF1058_RS08065 at 63.542 kb on - strand, within HMPREF1058_RS08065 at 63.543 kb on + strand, within HMPREF1058_RS08065 at 63.545 kb on + strand, within HMPREF1058_RS08065 at 63.545 kb on + strand, within HMPREF1058_RS08065 at 63.546 kb on - strand, within HMPREF1058_RS08065 at 63.546 kb on - strand, within HMPREF1058_RS08065 at 63.546 kb on - strand, within HMPREF1058_RS08065 at 63.546 kb on - strand, within HMPREF1058_RS08065 at 63.568 kb on + strand, within HMPREF1058_RS08065 at 63.571 kb on + strand, within HMPREF1058_RS08065 at 63.572 kb on - strand, within HMPREF1058_RS08065 at 63.613 kb on + strand, within HMPREF1058_RS08065 at 63.626 kb on + strand, within HMPREF1058_RS08065 at 63.674 kb on + strand, within HMPREF1058_RS08065 at 63.722 kb on - strand, within HMPREF1058_RS08065 at 63.799 kb on + strand at 63.814 kb on + strand at 63.815 kb on - strand at 63.887 kb on - strand at 63.908 kb on + strand at 63.927 kb on - strand at 64.018 kb on + strand, within HMPREF1058_RS08060 at 64.019 kb on - strand, within HMPREF1058_RS08060 at 64.188 kb on - strand, within HMPREF1058_RS08060 at 64.248 kb on - strand, within HMPREF1058_RS08060 at 64.248 kb on - strand, within HMPREF1058_RS08060 at 64.350 kb on + strand, within HMPREF1058_RS08060 at 64.350 kb on + strand, within HMPREF1058_RS08060 at 64.350 kb on + strand, within HMPREF1058_RS08060 at 64.351 kb on - strand, within HMPREF1058_RS08060 at 64.426 kb on - strand at 64.455 kb on + strand at 64.471 kb on - strand at 64.473 kb on - strand at 64.476 kb on + strand at 64.483 kb on + strand at 64.484 kb on - strand at 64.484 kb on - strand at 64.485 kb on + strand at 64.486 kb on - strand at 64.488 kb on - strand at 64.491 kb on - strand at 64.535 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 remove 62,206 - HMPREF1058_RS08070 0.64 -2.6 62,262 - HMPREF1058_RS08070 0.67 -0.5 62,266 + HMPREF1058_RS08070 0.67 -0.8 62,446 + HMPREF1058_RS08070 0.76 -1.3 62,475 - HMPREF1058_RS08070 0.77 -0.8 62,537 + HMPREF1058_RS08070 0.80 -1.5 62,575 + HMPREF1058_RS08070 0.82 +1.7 62,907 - -1.0 62,931 - -0.5 62,931 - +0.2 62,934 - -0.5 62,973 + +1.9 62,974 - -1.1 63,123 - HMPREF1058_RS08065 0.19 -1.8 63,140 + HMPREF1058_RS08065 0.21 -3.5 63,181 + HMPREF1058_RS08065 0.25 -1.2 63,182 - HMPREF1058_RS08065 0.25 -1.0 63,182 - HMPREF1058_RS08065 0.25 -2.4 63,182 - HMPREF1058_RS08065 0.25 -2.9 63,249 - HMPREF1058_RS08065 0.33 -2.8 63,350 + HMPREF1058_RS08065 0.44 -1.0 63,350 + HMPREF1058_RS08065 0.44 -2.4 63,350 + HMPREF1058_RS08065 0.44 -1.8 63,356 - HMPREF1058_RS08065 0.45 -3.8 63,370 + HMPREF1058_RS08065 0.46 -0.4 63,370 + HMPREF1058_RS08065 0.46 -2.9 63,371 - HMPREF1058_RS08065 0.46 -0.4 63,520 + HMPREF1058_RS08065 0.63 -2.8 63,541 + HMPREF1058_RS08065 0.65 -3.8 63,541 + HMPREF1058_RS08065 0.65 -2.0 63,541 + HMPREF1058_RS08065 0.65 -4.1 63,542 - HMPREF1058_RS08065 0.65 -2.2 63,542 - HMPREF1058_RS08065 0.65 -3.4 63,542 - HMPREF1058_RS08065 0.65 -2.1 63,543 + HMPREF1058_RS08065 0.65 -2.5 63,545 + HMPREF1058_RS08065 0.66 -5.1 63,545 + HMPREF1058_RS08065 0.66 -2.5 63,546 - HMPREF1058_RS08065 0.66 -1.0 63,546 - HMPREF1058_RS08065 0.66 -3.7 63,546 - HMPREF1058_RS08065 0.66 -1.8 63,546 - HMPREF1058_RS08065 0.66 -3.8 63,568 + HMPREF1058_RS08065 0.68 -2.1 63,571 + HMPREF1058_RS08065 0.68 -3.8 63,572 - HMPREF1058_RS08065 0.69 -2.3 63,613 + HMPREF1058_RS08065 0.73 -4.6 63,626 + HMPREF1058_RS08065 0.75 -1.2 63,674 + HMPREF1058_RS08065 0.80 -3.6 63,722 - HMPREF1058_RS08065 0.85 -3.5 63,799 + -2.0 63,814 + -3.5 63,815 - -1.8 63,887 - -0.4 63,908 + -2.6 63,927 - +3.3 64,018 + HMPREF1058_RS08060 0.20 -4.0 64,019 - HMPREF1058_RS08060 0.20 +3.8 64,188 - HMPREF1058_RS08060 0.50 +1.6 64,248 - HMPREF1058_RS08060 0.60 +2.2 64,248 - HMPREF1058_RS08060 0.60 +1.6 64,350 + HMPREF1058_RS08060 0.79 -3.7 64,350 + HMPREF1058_RS08060 0.79 -2.0 64,350 + HMPREF1058_RS08060 0.79 -3.4 64,351 - HMPREF1058_RS08060 0.79 +0.1 64,426 - +0.3 64,455 + -3.0 64,471 - +0.6 64,473 - +0.3 64,476 + -4.6 64,483 + -2.0 64,484 - -0.3 64,484 - +0.2 64,485 + -1.0 64,486 - -0.3 64,488 - -0.2 64,491 - -0.0 64,535 - -1.0
Or see this region's nucleotide sequence