Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01860 and HMPREF1058_RS01855 are separated by 18 nucleotides HMPREF1058_RS01855 and HMPREF1058_RS01850 overlap by 20 nucleotides HMPREF1058_RS01850 and HMPREF1058_RS21710 are separated by 16 nucleotides
HMPREF1058_RS01860: HMPREF1058_RS01860 - hypothetical protein, at 29,156 to 30,184
_RS01860
HMPREF1058_RS01855: HMPREF1058_RS01855 - hypothetical protein, at 30,203 to 30,496
_RS01855
HMPREF1058_RS01850: HMPREF1058_RS01850 - hypothetical protein, at 30,477 to 30,896
_RS01850
HMPREF1058_RS21710: HMPREF1058_RS21710 - hypothetical protein, at 30,913 to 31,190
_RS21710
Position (kb) 29
30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 28.156 kb on + strand at 28.156 kb on + strand at 28.220 kb on - strand at 28.220 kb on - strand at 28.220 kb on - strand at 28.220 kb on - strand at 28.220 kb on - strand at 28.220 kb on - strand at 28.221 kb on + strand at 28.222 kb on - strand at 28.222 kb on - strand at 28.222 kb on - strand at 28.310 kb on + strand at 28.461 kb on - strand at 28.646 kb on - strand at 28.646 kb on - strand at 28.646 kb on - strand at 29.243 kb on + strand at 29.286 kb on + strand, within HMPREF1058_RS01860 at 29.440 kb on - strand, within HMPREF1058_RS01860 at 29.504 kb on + strand, within HMPREF1058_RS01860 at 29.504 kb on + strand, within HMPREF1058_RS01860 at 29.505 kb on - strand, within HMPREF1058_RS01860 at 29.505 kb on - strand, within HMPREF1058_RS01860 at 29.583 kb on - strand, within HMPREF1058_RS01860 at 29.753 kb on - strand, within HMPREF1058_RS01860 at 29.851 kb on + strand, within HMPREF1058_RS01860 at 29.851 kb on + strand, within HMPREF1058_RS01860 at 29.851 kb on + strand, within HMPREF1058_RS01860 at 29.918 kb on - strand, within HMPREF1058_RS01860 at 29.976 kb on - strand, within HMPREF1058_RS01860 at 30.035 kb on - strand, within HMPREF1058_RS01860 at 30.048 kb on + strand, within HMPREF1058_RS01860 at 30.055 kb on - strand, within HMPREF1058_RS01860 at 30.095 kb on + strand at 30.284 kb on + strand, within HMPREF1058_RS01855 at 30.285 kb on - strand at 30.300 kb on - strand, within HMPREF1058_RS01855 at 30.309 kb on + strand, within HMPREF1058_RS01855 at 30.452 kb on + strand, within HMPREF1058_RS01855 at 30.453 kb on - strand, within HMPREF1058_RS01855 at 30.488 kb on - strand at 30.490 kb on - strand at 30.494 kb on + strand at 30.494 kb on + strand at 30.495 kb on - strand at 30.540 kb on - strand, within HMPREF1058_RS01850 at 30.566 kb on - strand, within HMPREF1058_RS01850 at 30.617 kb on + strand, within HMPREF1058_RS01850 at 30.617 kb on + strand, within HMPREF1058_RS01850 at 30.666 kb on - strand, within HMPREF1058_RS01850 at 30.666 kb on - strand, within HMPREF1058_RS01850 at 30.733 kb on - strand, within HMPREF1058_RS01850 at 30.733 kb on - strand at 30.733 kb on - strand, within HMPREF1058_RS01850 at 30.742 kb on - strand, within HMPREF1058_RS01850 at 30.795 kb on + strand, within HMPREF1058_RS01850 at 30.797 kb on + strand, within HMPREF1058_RS01850 at 30.849 kb on + strand, within HMPREF1058_RS01850 at 30.885 kb on + strand at 30.885 kb on + strand at 30.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 remove 28,156 + -1.1 28,156 + +1.5 28,220 - -0.8 28,220 - +0.9 28,220 - -0.7 28,220 - +0.0 28,220 - -0.0 28,220 - +0.4 28,221 + +1.5 28,222 - +0.0 28,222 - +0.7 28,222 - +0.2 28,310 + -1.5 28,461 - +1.4 28,646 - -1.7 28,646 - -0.1 28,646 - +0.9 29,243 + +0.3 29,286 + HMPREF1058_RS01860 0.13 +0.9 29,440 - HMPREF1058_RS01860 0.28 -0.4 29,504 + HMPREF1058_RS01860 0.34 +0.9 29,504 + HMPREF1058_RS01860 0.34 -2.5 29,505 - HMPREF1058_RS01860 0.34 -1.1 29,505 - HMPREF1058_RS01860 0.34 -0.7 29,583 - HMPREF1058_RS01860 0.41 +2.5 29,753 - HMPREF1058_RS01860 0.58 -0.4 29,851 + HMPREF1058_RS01860 0.68 +1.3 29,851 + HMPREF1058_RS01860 0.68 -1.1 29,851 + HMPREF1058_RS01860 0.68 -1.5 29,918 - HMPREF1058_RS01860 0.74 -0.7 29,976 - HMPREF1058_RS01860 0.80 -0.3 30,035 - HMPREF1058_RS01860 0.85 +1.2 30,048 + HMPREF1058_RS01860 0.87 +0.4 30,055 - HMPREF1058_RS01860 0.87 -0.7 30,095 + +0.1 30,284 + HMPREF1058_RS01855 0.28 -0.3 30,285 - +0.9 30,300 - HMPREF1058_RS01855 0.33 -2.2 30,309 + HMPREF1058_RS01855 0.36 -1.7 30,452 + HMPREF1058_RS01855 0.85 +0.9 30,453 - HMPREF1058_RS01855 0.85 -0.8 30,488 - -0.1 30,490 - +1.4 30,494 + +0.9 30,494 + +2.0 30,495 - +1.5 30,540 - HMPREF1058_RS01850 0.15 +4.0 30,566 - HMPREF1058_RS01850 0.21 -2.6 30,617 + HMPREF1058_RS01850 0.33 +0.9 30,617 + HMPREF1058_RS01850 0.33 -0.7 30,666 - HMPREF1058_RS01850 0.45 -1.5 30,666 - HMPREF1058_RS01850 0.45 -0.7 30,733 - HMPREF1058_RS01850 0.61 -0.7 30,733 - +0.3 30,733 - HMPREF1058_RS01850 0.61 -3.1 30,742 - HMPREF1058_RS01850 0.63 -0.3 30,795 + HMPREF1058_RS01850 0.76 +0.0 30,797 + HMPREF1058_RS01850 0.76 -0.1 30,849 + HMPREF1058_RS01850 0.89 -0.5 30,885 + -1.3 30,885 + +1.8 30,928 - -2.5
Or see this region's nucleotide sequence