Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10135 and HMPREF1058_RS10130 are separated by 2 nucleotides HMPREF1058_RS10130 and HMPREF1058_RS0119665 overlap by 1 nucleotides HMPREF1058_RS0119665 and HMPREF1058_RS10125 are separated by 11 nucleotides
HMPREF1058_RS10135: HMPREF1058_RS10135 - hypothetical protein, at 716,614 to 716,979
_RS10135
HMPREF1058_RS10130: HMPREF1058_RS10130 - MBL fold metallo-hydrolase, at 716,982 to 717,716
_RS10130
HMPREF1058_RS0119665: HMPREF1058_RS0119665 - recombinase RecT, at 717,716 to 718,705
_RS0119665
HMPREF1058_RS10125: HMPREF1058_RS10125 - AAA family ATPase, at 718,717 to 720,711
_RS10125
Position (kb) 717
718
719 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 716.732 kb on + strand, within HMPREF1058_RS10135 at 716.781 kb on + strand, within HMPREF1058_RS10135 at 716.784 kb on + strand, within HMPREF1058_RS10135 at 716.823 kb on + strand, within HMPREF1058_RS10135 at 716.831 kb on + strand, within HMPREF1058_RS10135 at 716.974 kb on + strand at 717.254 kb on + strand, within HMPREF1058_RS10130 at 717.326 kb on + strand, within HMPREF1058_RS10130 at 717.444 kb on + strand, within HMPREF1058_RS10130 at 717.495 kb on + strand, within HMPREF1058_RS10130 at 717.524 kb on + strand, within HMPREF1058_RS10130 at 717.663 kb on + strand at 717.787 kb on + strand at 717.829 kb on + strand, within HMPREF1058_RS0119665 at 717.914 kb on + strand, within HMPREF1058_RS0119665 at 718.499 kb on + strand, within HMPREF1058_RS0119665 at 718.499 kb on + strand, within HMPREF1058_RS0119665 at 718.499 kb on + strand, within HMPREF1058_RS0119665 at 718.526 kb on + strand, within HMPREF1058_RS0119665 at 718.526 kb on + strand, within HMPREF1058_RS0119665 at 718.564 kb on + strand, within HMPREF1058_RS0119665 at 718.669 kb on + strand at 718.718 kb on + strand at 718.762 kb on + strand at 718.762 kb on + strand at 718.798 kb on + strand at 718.798 kb on + strand at 718.801 kb on + strand at 718.821 kb on + strand at 718.885 kb on + strand at 718.887 kb on + strand at 718.887 kb on + strand at 718.897 kb on + strand at 718.899 kb on + strand at 718.977 kb on + strand, within HMPREF1058_RS10125 at 718.977 kb on + strand, within HMPREF1058_RS10125 at 718.977 kb on + strand, within HMPREF1058_RS10125 at 719.218 kb on + strand, within HMPREF1058_RS10125 at 719.268 kb on + strand, within HMPREF1058_RS10125 at 719.442 kb on + strand, within HMPREF1058_RS10125 at 719.590 kb on + strand, within HMPREF1058_RS10125 at 719.673 kb on + strand, within HMPREF1058_RS10125
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 remove 716,732 + HMPREF1058_RS10135 0.32 +0.9 716,781 + HMPREF1058_RS10135 0.46 +2.1 716,784 + HMPREF1058_RS10135 0.46 +1.5 716,823 + HMPREF1058_RS10135 0.57 -0.6 716,831 + HMPREF1058_RS10135 0.59 +1.0 716,974 + +2.2 717,254 + HMPREF1058_RS10130 0.37 -0.6 717,326 + HMPREF1058_RS10130 0.47 -0.2 717,444 + HMPREF1058_RS10130 0.63 -0.2 717,495 + HMPREF1058_RS10130 0.70 -1.4 717,524 + HMPREF1058_RS10130 0.74 -0.0 717,663 + -1.5 717,787 + +1.0 717,829 + HMPREF1058_RS0119665 0.11 -1.0 717,914 + HMPREF1058_RS0119665 0.20 -1.5 718,499 + HMPREF1058_RS0119665 0.79 +1.2 718,499 + HMPREF1058_RS0119665 0.79 -1.0 718,499 + HMPREF1058_RS0119665 0.79 -2.0 718,526 + HMPREF1058_RS0119665 0.82 +0.1 718,526 + HMPREF1058_RS0119665 0.82 +0.7 718,564 + HMPREF1058_RS0119665 0.86 +1.8 718,669 + +0.4 718,718 + +0.4 718,762 + +0.8 718,762 + +0.3 718,798 + +0.4 718,798 + -2.2 718,801 + -2.2 718,821 + +1.9 718,885 + -1.3 718,887 + -2.4 718,887 + -0.1 718,897 + +0.1 718,899 + -0.1 718,977 + HMPREF1058_RS10125 0.13 +3.6 718,977 + HMPREF1058_RS10125 0.13 +3.2 718,977 + HMPREF1058_RS10125 0.13 -1.0 719,218 + HMPREF1058_RS10125 0.25 -0.4 719,268 + HMPREF1058_RS10125 0.28 +2.7 719,442 + HMPREF1058_RS10125 0.36 +1.4 719,590 + HMPREF1058_RS10125 0.44 +0.1 719,673 + HMPREF1058_RS10125 0.48 +1.5
Or see this region's nucleotide sequence