Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01100 and HMPREF1058_RS21550 are separated by 198 nucleotides HMPREF1058_RS21550 and HMPREF1058_RS01095 are separated by 1 nucleotides HMPREF1058_RS01095 and HMPREF1058_RS01090 are separated by 1 nucleotides HMPREF1058_RS01090 and HMPREF1058_RS0120120 are separated by 594 nucleotides
HMPREF1058_RS01100: HMPREF1058_RS01100 - DUF4377 domain-containing protein, at 209,901 to 210,764
_RS01100
HMPREF1058_RS21550: HMPREF1058_RS21550 - hypothetical protein, at 210,963 to 211,034
_RS21550
HMPREF1058_RS01095: HMPREF1058_RS01095 - hypothetical protein, at 211,036 to 211,266
_RS01095
HMPREF1058_RS01090: HMPREF1058_RS01090 - DUF4852 domain-containing protein, at 211,268 to 212,422
_RS01090
HMPREF1058_RS0120120: HMPREF1058_RS0120120 - hypothetical protein, at 213,017 to 213,664
_RS0120120
Position (kb) 211
212
213 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 210.310 kb on - strand, within HMPREF1058_RS01100 at 210.311 kb on + strand, within HMPREF1058_RS01100 at 210.311 kb on + strand, within HMPREF1058_RS01100 at 210.311 kb on + strand, within HMPREF1058_RS01100 at 210.312 kb on - strand, within HMPREF1058_RS01100 at 210.312 kb on - strand, within HMPREF1058_RS01100 at 210.312 kb on - strand, within HMPREF1058_RS01100 at 210.312 kb on - strand, within HMPREF1058_RS01100 at 210.312 kb on - strand, within HMPREF1058_RS01100 at 210.319 kb on + strand, within HMPREF1058_RS01100 at 210.340 kb on - strand, within HMPREF1058_RS01100 at 210.343 kb on + strand, within HMPREF1058_RS01100 at 210.343 kb on + strand, within HMPREF1058_RS01100 at 210.343 kb on + strand, within HMPREF1058_RS01100 at 210.343 kb on + strand, within HMPREF1058_RS01100 at 210.422 kb on + strand, within HMPREF1058_RS01100 at 210.422 kb on + strand, within HMPREF1058_RS01100 at 210.423 kb on - strand, within HMPREF1058_RS01100 at 210.458 kb on + strand, within HMPREF1058_RS01100 at 210.498 kb on - strand, within HMPREF1058_RS01100 at 210.503 kb on - strand, within HMPREF1058_RS01100 at 210.640 kb on + strand, within HMPREF1058_RS01100 at 210.708 kb on + strand at 210.747 kb on - strand at 210.747 kb on - strand at 210.755 kb on + strand at 210.810 kb on - strand at 210.810 kb on - strand at 210.814 kb on - strand at 210.875 kb on - strand at 210.875 kb on - strand at 210.875 kb on - strand at 210.887 kb on + strand at 210.887 kb on + strand at 210.889 kb on + strand at 210.889 kb on + strand at 210.922 kb on + strand at 210.923 kb on - strand at 210.968 kb on - strand at 210.989 kb on - strand, within HMPREF1058_RS21550 at 211.015 kb on - strand, within HMPREF1058_RS21550 at 211.033 kb on - strand at 211.048 kb on - strand at 211.068 kb on - strand, within HMPREF1058_RS01095 at 211.068 kb on - strand, within HMPREF1058_RS01095 at 211.100 kb on + strand, within HMPREF1058_RS01095 at 211.100 kb on + strand, within HMPREF1058_RS01095 at 211.101 kb on - strand, within HMPREF1058_RS01095 at 211.119 kb on + strand, within HMPREF1058_RS01095 at 211.139 kb on + strand, within HMPREF1058_RS01095 at 211.148 kb on + strand, within HMPREF1058_RS01095 at 211.203 kb on + strand, within HMPREF1058_RS01095 at 211.203 kb on + strand, within HMPREF1058_RS01095 at 211.203 kb on + strand, within HMPREF1058_RS01095 at 211.206 kb on - strand, within HMPREF1058_RS01095 at 211.220 kb on + strand, within HMPREF1058_RS01095 at 211.267 kb on + strand at 211.399 kb on + strand, within HMPREF1058_RS01090 at 211.399 kb on + strand, within HMPREF1058_RS01090 at 211.399 kb on + strand, within HMPREF1058_RS01090 at 211.400 kb on - strand, within HMPREF1058_RS01090 at 211.565 kb on + strand, within HMPREF1058_RS01090 at 211.566 kb on - strand, within HMPREF1058_RS01090 at 211.651 kb on - strand, within HMPREF1058_RS01090 at 211.651 kb on - strand, within HMPREF1058_RS01090 at 211.746 kb on - strand, within HMPREF1058_RS01090 at 211.797 kb on - strand, within HMPREF1058_RS01090 at 211.826 kb on - strand, within HMPREF1058_RS01090 at 211.918 kb on + strand, within HMPREF1058_RS01090 at 211.958 kb on + strand, within HMPREF1058_RS01090 at 212.138 kb on + strand, within HMPREF1058_RS01090 at 212.138 kb on + strand, within HMPREF1058_RS01090 at 212.138 kb on + strand, within HMPREF1058_RS01090 at 212.139 kb on - strand, within HMPREF1058_RS01090 at 212.140 kb on + strand, within HMPREF1058_RS01090 at 212.143 kb on + strand, within HMPREF1058_RS01090 at 212.187 kb on + strand, within HMPREF1058_RS01090 at 212.187 kb on + strand, within HMPREF1058_RS01090 at 212.188 kb on - strand, within HMPREF1058_RS01090 at 212.189 kb on + strand, within HMPREF1058_RS01090 at 212.193 kb on + strand, within HMPREF1058_RS01090 at 212.193 kb on + strand, within HMPREF1058_RS01090 at 212.193 kb on + strand, within HMPREF1058_RS01090 at 212.193 kb on + strand, within HMPREF1058_RS01090 at 212.194 kb on - strand, within HMPREF1058_RS01090 at 212.195 kb on + strand, within HMPREF1058_RS01090 at 212.195 kb on + strand, within HMPREF1058_RS01090 at 212.196 kb on - strand, within HMPREF1058_RS01090 at 212.203 kb on + strand, within HMPREF1058_RS01090 at 212.274 kb on - strand, within HMPREF1058_RS01090 at 212.274 kb on - strand, within HMPREF1058_RS01090 at 212.348 kb on + strand at 212.366 kb on - strand at 212.384 kb on + strand at 212.384 kb on + strand at 212.385 kb on - strand at 212.391 kb on - strand at 212.423 kb on + strand at 212.468 kb on - strand at 212.470 kb on + strand at 212.485 kb on + strand at 212.494 kb on - strand at 212.508 kb on + strand at 212.560 kb on + strand at 212.606 kb on - strand at 212.606 kb on - strand at 212.673 kb on + strand at 212.673 kb on + strand at 212.676 kb on - strand at 212.706 kb on + strand at 212.707 kb on - strand at 212.727 kb on + strand at 212.728 kb on - strand at 212.731 kb on + strand at 212.731 kb on + strand at 212.740 kb on + strand at 212.809 kb on + strand at 212.914 kb on + strand at 212.915 kb on - strand at 212.969 kb on - strand at 213.031 kb on + strand at 213.090 kb on - strand, within HMPREF1058_RS0120120 at 213.093 kb on + strand, within HMPREF1058_RS0120120 at 213.094 kb on - strand, within HMPREF1058_RS0120120 at 213.127 kb on + strand, within HMPREF1058_RS0120120 at 213.150 kb on + strand, within HMPREF1058_RS0120120 at 213.151 kb on - strand, within HMPREF1058_RS0120120 at 213.151 kb on - strand, within HMPREF1058_RS0120120 at 213.222 kb on + strand, within HMPREF1058_RS0120120 at 213.223 kb on - strand, within HMPREF1058_RS0120120 at 213.229 kb on + strand, within HMPREF1058_RS0120120 at 213.230 kb on - strand, within HMPREF1058_RS0120120 at 213.266 kb on - strand, within HMPREF1058_RS0120120 at 213.266 kb on - strand, within HMPREF1058_RS0120120 at 213.282 kb on + strand, within HMPREF1058_RS0120120 at 213.283 kb on - strand, within HMPREF1058_RS0120120 at 213.301 kb on - strand, within HMPREF1058_RS0120120 at 213.314 kb on + strand, within HMPREF1058_RS0120120 at 213.314 kb on + strand, within HMPREF1058_RS0120120 at 213.314 kb on + strand, within HMPREF1058_RS0120120 at 213.316 kb on + strand, within HMPREF1058_RS0120120 at 213.317 kb on - strand, within HMPREF1058_RS0120120 at 213.347 kb on + strand, within HMPREF1058_RS0120120
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 remove 210,310 - HMPREF1058_RS01100 0.47 +1.2 210,311 + HMPREF1058_RS01100 0.47 -0.0 210,311 + HMPREF1058_RS01100 0.47 +2.0 210,311 + HMPREF1058_RS01100 0.47 -1.6 210,312 - HMPREF1058_RS01100 0.48 +1.7 210,312 - HMPREF1058_RS01100 0.48 +0.3 210,312 - HMPREF1058_RS01100 0.48 +1.3 210,312 - HMPREF1058_RS01100 0.48 +0.1 210,312 - HMPREF1058_RS01100 0.48 +0.0 210,319 + HMPREF1058_RS01100 0.48 -1.0 210,340 - HMPREF1058_RS01100 0.51 +2.7 210,343 + HMPREF1058_RS01100 0.51 +1.9 210,343 + HMPREF1058_RS01100 0.51 -1.3 210,343 + HMPREF1058_RS01100 0.51 -0.1 210,343 + HMPREF1058_RS01100 0.51 +1.9 210,422 + HMPREF1058_RS01100 0.60 +1.0 210,422 + HMPREF1058_RS01100 0.60 -0.7 210,423 - HMPREF1058_RS01100 0.60 +1.9 210,458 + HMPREF1058_RS01100 0.64 +2.3 210,498 - HMPREF1058_RS01100 0.69 -1.5 210,503 - HMPREF1058_RS01100 0.70 -2.5 210,640 + HMPREF1058_RS01100 0.86 +0.6 210,708 + -1.1 210,747 - +0.2 210,747 - +3.0 210,755 + +3.2 210,810 - +0.4 210,810 - -2.5 210,814 - +0.0 210,875 - +1.3 210,875 - +0.5 210,875 - -0.6 210,887 + +0.9 210,887 + -0.7 210,889 + +0.0 210,889 + +0.0 210,922 + -1.1 210,923 - +2.0 210,968 - +1.7 210,989 - HMPREF1058_RS21550 0.36 -1.1 211,015 - HMPREF1058_RS21550 0.72 +1.7 211,033 - +0.9 211,048 - +1.7 211,068 - HMPREF1058_RS01095 0.14 +1.5 211,068 - HMPREF1058_RS01095 0.14 -0.7 211,100 + HMPREF1058_RS01095 0.28 +1.9 211,100 + HMPREF1058_RS01095 0.28 -2.0 211,101 - HMPREF1058_RS01095 0.28 +0.2 211,119 + HMPREF1058_RS01095 0.36 +1.6 211,139 + HMPREF1058_RS01095 0.45 +1.2 211,148 + HMPREF1058_RS01095 0.48 +1.6 211,203 + HMPREF1058_RS01095 0.72 -0.4 211,203 + HMPREF1058_RS01095 0.72 -0.6 211,203 + HMPREF1058_RS01095 0.72 -1.6 211,206 - HMPREF1058_RS01095 0.74 +3.9 211,220 + HMPREF1058_RS01095 0.80 +0.9 211,267 + +1.1 211,399 + HMPREF1058_RS01090 0.11 +2.4 211,399 + HMPREF1058_RS01090 0.11 +1.5 211,399 + HMPREF1058_RS01090 0.11 -3.1 211,400 - HMPREF1058_RS01090 0.11 +3.4 211,565 + HMPREF1058_RS01090 0.26 -1.5 211,566 - HMPREF1058_RS01090 0.26 -0.1 211,651 - HMPREF1058_RS01090 0.33 -1.9 211,651 - HMPREF1058_RS01090 0.33 -0.5 211,746 - HMPREF1058_RS01090 0.41 +1.1 211,797 - HMPREF1058_RS01090 0.46 -2.0 211,826 - HMPREF1058_RS01090 0.48 -0.6 211,918 + HMPREF1058_RS01090 0.56 +1.3 211,958 + HMPREF1058_RS01090 0.60 +1.7 212,138 + HMPREF1058_RS01090 0.75 -2.5 212,138 + HMPREF1058_RS01090 0.75 +3.1 212,138 + HMPREF1058_RS01090 0.75 +0.1 212,139 - HMPREF1058_RS01090 0.75 +0.3 212,140 + HMPREF1058_RS01090 0.75 -0.7 212,143 + HMPREF1058_RS01090 0.76 +1.8 212,187 + HMPREF1058_RS01090 0.80 +2.2 212,187 + HMPREF1058_RS01090 0.80 +1.5 212,188 - HMPREF1058_RS01090 0.80 -0.0 212,189 + HMPREF1058_RS01090 0.80 -0.7 212,193 + HMPREF1058_RS01090 0.80 -0.1 212,193 + HMPREF1058_RS01090 0.80 +1.5 212,193 + HMPREF1058_RS01090 0.80 +1.0 212,193 + HMPREF1058_RS01090 0.80 -0.8 212,194 - HMPREF1058_RS01090 0.80 +0.8 212,195 + HMPREF1058_RS01090 0.80 -0.5 212,195 + HMPREF1058_RS01090 0.80 +0.0 212,196 - HMPREF1058_RS01090 0.80 -1.5 212,203 + HMPREF1058_RS01090 0.81 +1.3 212,274 - HMPREF1058_RS01090 0.87 +1.6 212,274 - HMPREF1058_RS01090 0.87 +0.1 212,348 + +1.4 212,366 - -0.7 212,384 + -1.4 212,384 + -0.7 212,385 - -3.5 212,391 - -0.7 212,423 + -2.7 212,468 - -2.5 212,470 + +0.9 212,485 + +0.9 212,494 - +2.6 212,508 + -0.2 212,560 + -0.8 212,606 - -0.2 212,606 - +1.3 212,673 + +0.9 212,673 + +1.5 212,676 - -0.1 212,706 + -0.1 212,707 - -1.1 212,727 + +0.2 212,728 - +0.1 212,731 + +1.6 212,731 + +2.5 212,740 + +1.0 212,809 + -0.1 212,914 + +2.2 212,915 - +0.6 212,969 - -2.8 213,031 + +0.2 213,090 - HMPREF1058_RS0120120 0.11 +3.4 213,093 + HMPREF1058_RS0120120 0.12 +0.9 213,094 - HMPREF1058_RS0120120 0.12 -1.1 213,127 + HMPREF1058_RS0120120 0.17 -0.9 213,150 + HMPREF1058_RS0120120 0.21 -3.0 213,151 - HMPREF1058_RS0120120 0.21 -2.0 213,151 - HMPREF1058_RS0120120 0.21 -1.8 213,222 + HMPREF1058_RS0120120 0.32 +0.5 213,223 - HMPREF1058_RS0120120 0.32 +0.7 213,229 + HMPREF1058_RS0120120 0.33 -1.0 213,230 - HMPREF1058_RS0120120 0.33 -0.5 213,266 - HMPREF1058_RS0120120 0.38 -0.7 213,266 - HMPREF1058_RS0120120 0.38 +0.4 213,282 + HMPREF1058_RS0120120 0.41 -1.1 213,283 - HMPREF1058_RS0120120 0.41 -1.1 213,301 - HMPREF1058_RS0120120 0.44 +0.9 213,314 + HMPREF1058_RS0120120 0.46 +0.3 213,314 + HMPREF1058_RS0120120 0.46 -1.3 213,314 + HMPREF1058_RS0120120 0.46 +0.9 213,316 + HMPREF1058_RS0120120 0.46 +0.2 213,317 - HMPREF1058_RS0120120 0.46 +2.3 213,347 + HMPREF1058_RS0120120 0.51 +1.3
Or see this region's nucleotide sequence