Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS21555 and HMPREF1058_RS01045 are separated by 434 nucleotides HMPREF1058_RS01045 and HMPREF1058_RS01040 are separated by 1 nucleotides HMPREF1058_RS01040 and HMPREF1058_RS21250 are separated by 14 nucleotides
HMPREF1058_RS21555: HMPREF1058_RS21555 - hypothetical protein, at 222,690 to 223,205
_RS21555
HMPREF1058_RS01045: HMPREF1058_RS01045 - hypothetical protein, at 223,640 to 224,137
_RS01045
HMPREF1058_RS01040: HMPREF1058_RS01040 - hypothetical protein, at 224,139 to 224,411
_RS01040
HMPREF1058_RS21250: HMPREF1058_RS21250 - hypothetical protein, at 224,426 to 225,064
_RS21250
Position (kb) 224
225 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 223.177 kb on - strand at 223.180 kb on - strand at 223.245 kb on + strand at 223.245 kb on + strand at 223.251 kb on + strand at 223.251 kb on + strand at 223.281 kb on + strand at 223.281 kb on + strand at 223.282 kb on - strand at 223.282 kb on - strand at 223.306 kb on + strand at 223.312 kb on - strand at 223.332 kb on + strand at 223.332 kb on + strand at 223.333 kb on - strand at 223.333 kb on - strand at 223.338 kb on + strand at 223.340 kb on + strand at 223.603 kb on + strand at 223.627 kb on + strand at 223.652 kb on + strand at 223.654 kb on + strand at 223.800 kb on + strand, within HMPREF1058_RS01045 at 223.810 kb on + strand, within HMPREF1058_RS01045 at 223.840 kb on + strand, within HMPREF1058_RS01045 at 223.923 kb on - strand, within HMPREF1058_RS01045 at 223.968 kb on + strand, within HMPREF1058_RS01045 at 223.968 kb on + strand, within HMPREF1058_RS01045 at 223.968 kb on + strand, within HMPREF1058_RS01045 at 223.969 kb on - strand, within HMPREF1058_RS01045 at 223.969 kb on - strand, within HMPREF1058_RS01045 at 223.969 kb on - strand, within HMPREF1058_RS01045 at 223.969 kb on - strand, within HMPREF1058_RS01045 at 223.969 kb on - strand, within HMPREF1058_RS01045 at 223.972 kb on + strand, within HMPREF1058_RS01045 at 223.972 kb on + strand, within HMPREF1058_RS01045 at 223.973 kb on - strand, within HMPREF1058_RS01045 at 223.973 kb on - strand, within HMPREF1058_RS01045 at 223.973 kb on - strand, within HMPREF1058_RS01045 at 223.973 kb on - strand, within HMPREF1058_RS01045 at 223.976 kb on + strand, within HMPREF1058_RS01045 at 223.977 kb on - strand, within HMPREF1058_RS01045 at 224.002 kb on - strand, within HMPREF1058_RS01045 at 224.117 kb on + strand at 224.118 kb on - strand at 224.140 kb on + strand at 224.141 kb on - strand at 224.313 kb on - strand, within HMPREF1058_RS01040 at 224.313 kb on - strand, within HMPREF1058_RS01040 at 224.314 kb on + strand, within HMPREF1058_RS01040 at 224.314 kb on + strand, within HMPREF1058_RS01040 at 224.315 kb on - strand, within HMPREF1058_RS01040 at 224.316 kb on + strand, within HMPREF1058_RS01040 at 224.355 kb on - strand, within HMPREF1058_RS01040 at 224.370 kb on - strand, within HMPREF1058_RS01040 at 224.412 kb on - strand at 224.412 kb on - strand at 224.418 kb on + strand at 224.436 kb on + strand at 224.456 kb on - strand at 224.461 kb on + strand at 224.461 kb on + strand at 224.468 kb on - strand at 224.497 kb on + strand, within HMPREF1058_RS21250 at 224.497 kb on + strand, within HMPREF1058_RS21250 at 224.552 kb on + strand, within HMPREF1058_RS21250 at 224.566 kb on + strand, within HMPREF1058_RS21250 at 224.577 kb on + strand, within HMPREF1058_RS21250 at 224.577 kb on + strand, within HMPREF1058_RS21250 at 224.577 kb on + strand, within HMPREF1058_RS21250 at 224.577 kb on + strand, within HMPREF1058_RS21250 at 224.579 kb on + strand, within HMPREF1058_RS21250 at 224.581 kb on + strand, within HMPREF1058_RS21250 at 224.581 kb on + strand, within HMPREF1058_RS21250 at 224.581 kb on + strand, within HMPREF1058_RS21250 at 224.582 kb on - strand, within HMPREF1058_RS21250 at 224.584 kb on + strand, within HMPREF1058_RS21250 at 224.584 kb on + strand, within HMPREF1058_RS21250 at 224.585 kb on - strand, within HMPREF1058_RS21250 at 224.618 kb on + strand, within HMPREF1058_RS21250 at 224.630 kb on - strand, within HMPREF1058_RS21250 at 224.632 kb on + strand, within HMPREF1058_RS21250 at 224.721 kb on + strand, within HMPREF1058_RS21250 at 224.823 kb on - strand, within HMPREF1058_RS21250 at 224.842 kb on - strand, within HMPREF1058_RS21250 at 224.889 kb on - strand, within HMPREF1058_RS21250 at 224.913 kb on + strand, within HMPREF1058_RS21250 at 225.068 kb on - strand at 225.074 kb on - strand at 225.074 kb on - strand at 225.079 kb on - strand at 225.318 kb on + strand at 225.318 kb on + strand at 225.319 kb on - strand at 225.320 kb on + strand at 225.321 kb on - strand at 225.354 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 remove 223,177 - +0.9 223,180 - +1.3 223,245 + +0.9 223,245 + +0.4 223,251 + +1.9 223,251 + -0.3 223,281 + +0.8 223,281 + -2.6 223,282 - +1.3 223,282 - -1.1 223,306 + -0.2 223,312 - -1.3 223,332 + +1.3 223,332 + +1.8 223,333 - -0.7 223,333 - +1.6 223,338 + -0.1 223,340 + +1.7 223,603 + -1.1 223,627 + -0.6 223,652 + -1.3 223,654 + +0.1 223,800 + HMPREF1058_RS01045 0.32 +0.9 223,810 + HMPREF1058_RS01045 0.34 +2.3 223,840 + HMPREF1058_RS01045 0.40 +0.4 223,923 - HMPREF1058_RS01045 0.57 -1.7 223,968 + HMPREF1058_RS01045 0.66 +0.1 223,968 + HMPREF1058_RS01045 0.66 -2.0 223,968 + HMPREF1058_RS01045 0.66 +1.9 223,969 - HMPREF1058_RS01045 0.66 -0.1 223,969 - HMPREF1058_RS01045 0.66 +0.9 223,969 - HMPREF1058_RS01045 0.66 +0.2 223,969 - HMPREF1058_RS01045 0.66 +1.3 223,969 - HMPREF1058_RS01045 0.66 -0.8 223,972 + HMPREF1058_RS01045 0.67 +0.6 223,972 + HMPREF1058_RS01045 0.67 -0.7 223,973 - HMPREF1058_RS01045 0.67 -1.1 223,973 - HMPREF1058_RS01045 0.67 +0.4 223,973 - HMPREF1058_RS01045 0.67 +2.1 223,973 - HMPREF1058_RS01045 0.67 +0.7 223,976 + HMPREF1058_RS01045 0.67 +1.3 223,977 - HMPREF1058_RS01045 0.68 +0.3 224,002 - HMPREF1058_RS01045 0.73 -0.7 224,117 + +1.3 224,118 - +1.0 224,140 + -0.6 224,141 - +0.5 224,313 - HMPREF1058_RS01040 0.64 +1.2 224,313 - HMPREF1058_RS01040 0.64 -2.0 224,314 + HMPREF1058_RS01040 0.64 +0.1 224,314 + HMPREF1058_RS01040 0.64 -0.9 224,315 - HMPREF1058_RS01040 0.64 -0.7 224,316 + HMPREF1058_RS01040 0.65 +1.2 224,355 - HMPREF1058_RS01040 0.79 -1.2 224,370 - HMPREF1058_RS01040 0.85 -2.7 224,412 - -1.1 224,412 - -0.7 224,418 + -0.6 224,436 + +0.0 224,456 - -0.3 224,461 + +0.4 224,461 + +0.0 224,468 - -1.0 224,497 + HMPREF1058_RS21250 0.11 +0.4 224,497 + HMPREF1058_RS21250 0.11 -2.1 224,552 + HMPREF1058_RS21250 0.20 +0.9 224,566 + HMPREF1058_RS21250 0.22 -0.2 224,577 + HMPREF1058_RS21250 0.24 +1.7 224,577 + HMPREF1058_RS21250 0.24 +0.9 224,577 + HMPREF1058_RS21250 0.24 -1.0 224,577 + HMPREF1058_RS21250 0.24 +0.3 224,579 + HMPREF1058_RS21250 0.24 +1.4 224,581 + HMPREF1058_RS21250 0.24 -0.1 224,581 + HMPREF1058_RS21250 0.24 -0.1 224,581 + HMPREF1058_RS21250 0.24 +4.7 224,582 - HMPREF1058_RS21250 0.24 -1.1 224,584 + HMPREF1058_RS21250 0.25 +0.3 224,584 + HMPREF1058_RS21250 0.25 -2.0 224,585 - HMPREF1058_RS21250 0.25 +0.9 224,618 + HMPREF1058_RS21250 0.30 +4.3 224,630 - HMPREF1058_RS21250 0.32 -0.7 224,632 + HMPREF1058_RS21250 0.32 +1.0 224,721 + HMPREF1058_RS21250 0.46 -0.8 224,823 - HMPREF1058_RS21250 0.62 -0.1 224,842 - HMPREF1058_RS21250 0.65 -0.7 224,889 - HMPREF1058_RS21250 0.72 -0.1 224,913 + HMPREF1058_RS21250 0.76 -0.4 225,068 - -0.1 225,074 - -2.3 225,074 - +0.9 225,079 - -1.7 225,318 + +1.5 225,318 + -1.6 225,319 - +0.8 225,320 + -1.7 225,321 - +0.7 225,354 + +1.3
Or see this region's nucleotide sequence