Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_607

Experiment: LB no stress 48 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_606 and Pf6N2E2_607 are separated by 807 nucleotidesPf6N2E2_607 and Pf6N2E2_608 are separated by 132 nucleotides Pf6N2E2_606 - FIG005548: transport protein, at 682,258 to 684,633 _606 Pf6N2E2_607 - hypothetical protein, at 685,441 to 690,153 _607 Pf6N2E2_608 - Transcriptional regulator of the arabinose operon in Shewanella, GntR family, at 690,286 to 691,005 _608 Position (kb) 685 686 687 688 689 690 691Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 684.711 kb on - strandat 684.926 kb on + strandat 684.927 kb on - strandat 684.928 kb on + strandat 684.929 kb on + strandat 684.929 kb on - strandat 684.929 kb on - strandat 684.929 kb on - strandat 684.929 kb on - strandat 685.034 kb on + strandat 685.035 kb on - strandat 685.047 kb on + strandat 685.047 kb on + strandat 685.047 kb on + strandat 685.047 kb on + strandat 685.047 kb on + strandat 685.047 kb on + strandat 685.047 kb on + strandat 685.048 kb on - strandat 685.048 kb on - strandat 685.048 kb on - strandat 685.048 kb on - strandat 685.048 kb on - strandat 685.048 kb on - strandat 685.051 kb on - strandat 685.081 kb on - strandat 685.127 kb on + strandat 685.128 kb on - strandat 685.184 kb on - strandat 685.528 kb on - strandat 685.625 kb on + strandat 685.626 kb on - strandat 685.677 kb on - strandat 685.763 kb on + strandat 685.764 kb on - strandat 686.005 kb on - strand, within Pf6N2E2_607at 686.005 kb on - strand, within Pf6N2E2_607at 686.035 kb on + strand, within Pf6N2E2_607at 686.035 kb on + strand, within Pf6N2E2_607at 686.150 kb on + strand, within Pf6N2E2_607at 686.151 kb on - strand, within Pf6N2E2_607at 686.412 kb on - strand, within Pf6N2E2_607at 686.477 kb on + strand, within Pf6N2E2_607at 686.477 kb on + strand, within Pf6N2E2_607at 686.478 kb on - strand, within Pf6N2E2_607at 686.478 kb on - strand, within Pf6N2E2_607at 686.531 kb on + strand, within Pf6N2E2_607at 686.627 kb on - strand, within Pf6N2E2_607at 686.783 kb on + strand, within Pf6N2E2_607at 686.783 kb on + strand, within Pf6N2E2_607at 686.784 kb on - strand, within Pf6N2E2_607at 686.822 kb on + strand, within Pf6N2E2_607at 686.823 kb on - strand, within Pf6N2E2_607at 686.823 kb on - strand, within Pf6N2E2_607at 686.831 kb on + strand, within Pf6N2E2_607at 686.831 kb on + strand, within Pf6N2E2_607at 687.047 kb on + strand, within Pf6N2E2_607at 687.047 kb on + strand, within Pf6N2E2_607at 687.191 kb on + strand, within Pf6N2E2_607at 687.192 kb on - strand, within Pf6N2E2_607at 687.194 kb on + strandat 687.335 kb on - strand, within Pf6N2E2_607at 687.416 kb on + strand, within Pf6N2E2_607at 687.461 kb on + strand, within Pf6N2E2_607at 687.461 kb on + strand, within Pf6N2E2_607at 687.461 kb on + strand, within Pf6N2E2_607at 687.461 kb on + strand, within Pf6N2E2_607at 687.462 kb on - strand, within Pf6N2E2_607at 687.916 kb on + strand, within Pf6N2E2_607at 688.043 kb on + strand, within Pf6N2E2_607at 688.043 kb on + strand, within Pf6N2E2_607at 688.044 kb on - strand, within Pf6N2E2_607at 688.161 kb on - strand, within Pf6N2E2_607at 688.161 kb on - strand, within Pf6N2E2_607at 688.202 kb on + strand, within Pf6N2E2_607at 688.202 kb on + strand, within Pf6N2E2_607at 688.203 kb on - strand, within Pf6N2E2_607at 688.298 kb on + strand, within Pf6N2E2_607at 688.317 kb on + strand, within Pf6N2E2_607at 688.317 kb on + strand, within Pf6N2E2_607at 688.317 kb on + strand, within Pf6N2E2_607at 688.317 kb on + strand, within Pf6N2E2_607at 688.317 kb on + strand, within Pf6N2E2_607at 688.318 kb on - strand, within Pf6N2E2_607at 688.318 kb on - strand, within Pf6N2E2_607at 688.318 kb on - strand, within Pf6N2E2_607at 688.318 kb on - strand, within Pf6N2E2_607at 688.318 kb on - strand, within Pf6N2E2_607at 688.318 kb on - strand, within Pf6N2E2_607at 688.318 kb on - strand, within Pf6N2E2_607at 688.318 kb on - strand, within Pf6N2E2_607at 688.318 kb on - strand, within Pf6N2E2_607at 688.319 kb on + strand, within Pf6N2E2_607at 688.331 kb on + strand, within Pf6N2E2_607at 688.647 kb on - strand, within Pf6N2E2_607at 688.647 kb on - strand, within Pf6N2E2_607at 688.656 kb on - strand, within Pf6N2E2_607at 688.656 kb on - strand, within Pf6N2E2_607at 688.895 kb on + strand, within Pf6N2E2_607at 688.951 kb on + strand, within Pf6N2E2_607at 688.951 kb on + strand, within Pf6N2E2_607at 688.951 kb on + strand, within Pf6N2E2_607at 688.951 kb on + strand, within Pf6N2E2_607at 688.952 kb on - strand, within Pf6N2E2_607at 688.989 kb on + strand, within Pf6N2E2_607at 689.186 kb on + strand, within Pf6N2E2_607at 689.187 kb on - strand, within Pf6N2E2_607at 689.187 kb on - strand, within Pf6N2E2_607at 689.336 kb on + strand, within Pf6N2E2_607at 689.336 kb on + strand, within Pf6N2E2_607at 689.336 kb on + strand, within Pf6N2E2_607at 689.337 kb on - strand, within Pf6N2E2_607at 689.522 kb on + strand, within Pf6N2E2_607at 689.522 kb on + strand, within Pf6N2E2_607at 689.522 kb on + strand, within Pf6N2E2_607at 689.522 kb on + strand, within Pf6N2E2_607at 689.528 kb on + strand, within Pf6N2E2_607at 689.528 kb on + strand, within Pf6N2E2_607at 689.529 kb on - strand, within Pf6N2E2_607at 689.638 kb on - strand, within Pf6N2E2_607at 690.197 kb on + strandat 690.197 kb on + strandat 690.224 kb on + strandat 690.224 kb on + strandat 690.225 kb on - strandat 690.225 kb on - strandat 690.226 kb on + strandat 690.226 kb on + strandat 690.226 kb on + strandat 690.227 kb on - strandat 690.227 kb on - strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.228 kb on + strandat 690.229 kb on - strandat 690.229 kb on - strandat 690.229 kb on - strandat 690.229 kb on - strandat 690.229 kb on - strandat 690.229 kb on - strandat 690.229 kb on - strandat 690.229 kb on - strandat 690.229 kb on - strandat 690.280 kb on + strandat 690.280 kb on + strandat 690.281 kb on - strandat 690.281 kb on - strandat 690.285 kb on - strandat 690.285 kb on - strandat 690.759 kb on + strand, within Pf6N2E2_608at 690.759 kb on + strand, within Pf6N2E2_608at 690.759 kb on + strand, within Pf6N2E2_608at 690.759 kb on + strand, within Pf6N2E2_608at 690.759 kb on + strand, within Pf6N2E2_608at 690.759 kb on + strand, within Pf6N2E2_608at 690.760 kb on - strand, within Pf6N2E2_608at 690.760 kb on - strand, within Pf6N2E2_608at 690.809 kb on + strand, within Pf6N2E2_608at 690.809 kb on + strand, within Pf6N2E2_608at 690.810 kb on - strand, within Pf6N2E2_608at 690.872 kb on + strand, within Pf6N2E2_608at 690.873 kb on - strand, within Pf6N2E2_608at 690.873 kb on - strand, within Pf6N2E2_608at 690.907 kb on - strand, within Pf6N2E2_608at 690.998 kb on + strandat 691.047 kb on + strandat 691.048 kb on - strandat 691.119 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 48 hours
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684,711 - -0.6
684,926 + -2.0
684,927 - -0.9
684,928 + +0.1
684,929 + -0.6
684,929 - +0.6
684,929 - -0.5
684,929 - -1.2
684,929 - -1.6
685,034 + +0.9
685,035 - -0.9
685,047 + +0.6
685,047 + +0.3
685,047 + -0.9
685,047 + +1.4
685,047 + +0.3
685,047 + +0.9
685,047 + +0.5
685,048 - +0.7
685,048 - -0.6
685,048 - -0.5
685,048 - -0.6
685,048 - +0.0
685,048 - +0.8
685,051 - -0.9
685,081 - +1.4
685,127 + +0.6
685,128 - +0.6
685,184 - -1.0
685,528 - +1.3
685,625 + +1.2
685,626 - +0.9
685,677 - +1.0
685,763 + +0.1
685,764 - +0.5
686,005 - Pf6N2E2_607 0.12 +0.1
686,005 - Pf6N2E2_607 0.12 -1.0
686,035 + Pf6N2E2_607 0.13 -0.1
686,035 + Pf6N2E2_607 0.13 +0.6
686,150 + Pf6N2E2_607 0.15 +0.4
686,151 - Pf6N2E2_607 0.15 -1.4
686,412 - Pf6N2E2_607 0.21 +0.2
686,477 + Pf6N2E2_607 0.22 -0.3
686,477 + Pf6N2E2_607 0.22 +0.5
686,478 - Pf6N2E2_607 0.22 -0.3
686,478 - Pf6N2E2_607 0.22 +0.1
686,531 + Pf6N2E2_607 0.23 +0.4
686,627 - Pf6N2E2_607 0.25 -2.0
686,783 + Pf6N2E2_607 0.28 -0.2
686,783 + Pf6N2E2_607 0.28 -1.1
686,784 - Pf6N2E2_607 0.28 -1.3
686,822 + Pf6N2E2_607 0.29 -1.7
686,823 - Pf6N2E2_607 0.29 +0.8
686,823 - Pf6N2E2_607 0.29 -0.3
686,831 + Pf6N2E2_607 0.29 -1.1
686,831 + Pf6N2E2_607 0.29 -1.5
687,047 + Pf6N2E2_607 0.34 -0.7
687,047 + Pf6N2E2_607 0.34 -0.1
687,191 + Pf6N2E2_607 0.37 +1.1
687,192 - Pf6N2E2_607 0.37 -2.1
687,194 + +0.4
687,335 - Pf6N2E2_607 0.40 +1.4
687,416 + Pf6N2E2_607 0.42 -0.1
687,461 + Pf6N2E2_607 0.43 -0.1
687,461 + Pf6N2E2_607 0.43 +0.3
687,461 + Pf6N2E2_607 0.43 -0.4
687,461 + Pf6N2E2_607 0.43 -0.2
687,462 - Pf6N2E2_607 0.43 +2.4
687,916 + Pf6N2E2_607 0.53 -0.5
688,043 + Pf6N2E2_607 0.55 -0.8
688,043 + Pf6N2E2_607 0.55 +0.0
688,044 - Pf6N2E2_607 0.55 -0.6
688,161 - Pf6N2E2_607 0.58 -1.0
688,161 - Pf6N2E2_607 0.58 -0.4
688,202 + Pf6N2E2_607 0.59 -0.1
688,202 + Pf6N2E2_607 0.59 +0.5
688,203 - Pf6N2E2_607 0.59 +0.0
688,298 + Pf6N2E2_607 0.61 +1.2
688,317 + Pf6N2E2_607 0.61 -0.8
688,317 + Pf6N2E2_607 0.61 -1.8
688,317 + Pf6N2E2_607 0.61 +0.6
688,317 + Pf6N2E2_607 0.61 -0.2
688,317 + Pf6N2E2_607 0.61 -0.6
688,318 - Pf6N2E2_607 0.61 +0.2
688,318 - Pf6N2E2_607 0.61 +0.6
688,318 - Pf6N2E2_607 0.61 +0.8
688,318 - Pf6N2E2_607 0.61 +0.9
688,318 - Pf6N2E2_607 0.61 -0.2
688,318 - Pf6N2E2_607 0.61 -0.1
688,318 - Pf6N2E2_607 0.61 +0.2
688,318 - Pf6N2E2_607 0.61 -0.6
688,318 - Pf6N2E2_607 0.61 -1.6
688,319 + Pf6N2E2_607 0.61 -0.5
688,331 + Pf6N2E2_607 0.61 -2.2
688,647 - Pf6N2E2_607 0.68 -0.2
688,647 - Pf6N2E2_607 0.68 -1.0
688,656 - Pf6N2E2_607 0.68 +0.8
688,656 - Pf6N2E2_607 0.68 -0.8
688,895 + Pf6N2E2_607 0.73 -1.3
688,951 + Pf6N2E2_607 0.74 +0.0
688,951 + Pf6N2E2_607 0.74 -0.0
688,951 + Pf6N2E2_607 0.74 -0.2
688,951 + Pf6N2E2_607 0.74 -2.2
688,952 - Pf6N2E2_607 0.74 +0.4
688,989 + Pf6N2E2_607 0.75 +0.9
689,186 + Pf6N2E2_607 0.79 +0.4
689,187 - Pf6N2E2_607 0.79 -3.6
689,187 - Pf6N2E2_607 0.79 +0.9
689,336 + Pf6N2E2_607 0.83 -0.9
689,336 + Pf6N2E2_607 0.83 +1.0
689,336 + Pf6N2E2_607 0.83 -0.5
689,337 - Pf6N2E2_607 0.83 -0.6
689,522 + Pf6N2E2_607 0.87 +1.2
689,522 + Pf6N2E2_607 0.87 +0.9
689,522 + Pf6N2E2_607 0.87 -0.5
689,522 + Pf6N2E2_607 0.87 +0.0
689,528 + Pf6N2E2_607 0.87 -1.0
689,528 + Pf6N2E2_607 0.87 -1.0
689,529 - Pf6N2E2_607 0.87 -0.3
689,638 - Pf6N2E2_607 0.89 -0.6
690,197 + +0.2
690,197 + +0.1
690,224 + +0.8
690,224 + -0.6
690,225 - -0.1
690,225 - -0.5
690,226 + +2.4
690,226 + +1.4
690,226 + -0.4
690,227 - +2.1
690,227 - -0.1
690,228 + -1.7
690,228 + +0.0
690,228 + +0.7
690,228 + -0.6
690,228 + -0.1
690,228 + -0.6
690,228 + -0.3
690,228 + -0.1
690,228 + -0.5
690,228 + +1.1
690,228 + +0.7
690,228 + +0.2
690,229 - -0.9
690,229 - +1.9
690,229 - +0.4
690,229 - -2.1
690,229 - -1.5
690,229 - -0.3
690,229 - +1.9
690,229 - +0.6
690,229 - +1.8
690,280 + +0.5
690,280 + +0.5
690,281 - +1.4
690,281 - +0.5
690,285 - +0.5
690,285 - -0.2
690,759 + Pf6N2E2_608 0.66 -2.1
690,759 + Pf6N2E2_608 0.66 +0.3
690,759 + Pf6N2E2_608 0.66 -0.0
690,759 + Pf6N2E2_608 0.66 -0.4
690,759 + Pf6N2E2_608 0.66 -1.2
690,759 + Pf6N2E2_608 0.66 +0.4
690,760 - Pf6N2E2_608 0.66 +0.4
690,760 - Pf6N2E2_608 0.66 +0.4
690,809 + Pf6N2E2_608 0.73 -1.0
690,809 + Pf6N2E2_608 0.73 -0.1
690,810 - Pf6N2E2_608 0.73 -2.7
690,872 + Pf6N2E2_608 0.81 +0.8
690,873 - Pf6N2E2_608 0.82 +0.7
690,873 - Pf6N2E2_608 0.82 -0.6
690,907 - Pf6N2E2_608 0.86 +0.5
690,998 + -0.2
691,047 + +0.3
691,048 - -0.6
691,119 - +0.4

Or see this region's nucleotide sequence