Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_20835 and AO353_20840 overlap by 4 nucleotides AO353_20840 and AO353_20845 are separated by 45 nucleotides AO353_20845 and AO353_20850 are separated by 41 nucleotides AO353_20850 and AO353_20855 are separated by 128 nucleotides AO353_20855 and AO353_20860 are separated by 163 nucleotides
AO353_20835: AO353_20835 - Ribokinase (EC 2.7.1.15) <small>(from data)</small>, at 4,562,793 to 4,563,710
_20835
AO353_20840: AO353_20840 - ribose pyranase, at 4,563,707 to 4,564,111
_20840
AO353_20845: AO353_20845 - uridine/adenosine nucleosidase (EC 3.2.2.3; EC 3.2.2.7) <small>(from data)</small>, at 4,564,157 to 4,565,185
_20845
AO353_20850: AO353_20850 - hypothetical protein, at 4,565,227 to 4,565,430
_20850
AO353_20855: AO353_20855 - hypothetical protein, at 4,565,559 to 4,565,864
_20855
AO353_20860: AO353_20860 - hypothetical protein, at 4,566,028 to 4,566,342
_20860
Position (kb) 4564
4565
4566 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4563.234 kb on + strand, within AO353_20835 at 4563.234 kb on + strand, within AO353_20835 at 4563.234 kb on + strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.235 kb on - strand, within AO353_20835 at 4563.333 kb on + strand, within AO353_20835 at 4563.333 kb on + strand, within AO353_20835 at 4563.333 kb on + strand, within AO353_20835 at 4563.688 kb on + strand at 4563.689 kb on - strand at 4563.689 kb on - strand at 4563.689 kb on - strand at 4563.865 kb on + strand, within AO353_20840 at 4563.865 kb on + strand, within AO353_20840 at 4563.865 kb on + strand, within AO353_20840 at 4564.018 kb on + strand, within AO353_20840 at 4564.024 kb on - strand, within AO353_20840 at 4564.024 kb on - strand, within AO353_20840 at 4564.074 kb on - strand at 4564.074 kb on - strand at 4564.109 kb on + strand at 4564.110 kb on - strand at 4564.110 kb on - strand at 4564.110 kb on - strand at 4564.135 kb on - strand at 4564.156 kb on + strand at 4564.156 kb on + strand at 4564.156 kb on + strand at 4564.156 kb on + strand at 4564.157 kb on - strand at 4564.157 kb on - strand at 4564.157 kb on - strand at 4564.157 kb on - strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.160 kb on + strand at 4564.161 kb on - strand at 4564.161 kb on - strand at 4564.161 kb on - strand at 4564.161 kb on - strand at 4564.161 kb on - strand at 4564.161 kb on - strand at 4564.161 kb on - strand at 4564.161 kb on - strand at 4564.225 kb on + strand at 4564.252 kb on - strand at 4564.252 kb on - strand at 4564.252 kb on - strand at 4564.348 kb on + strand, within AO353_20845 at 4564.436 kb on + strand, within AO353_20845 at 4564.436 kb on + strand, within AO353_20845 at 4564.437 kb on - strand, within AO353_20845 at 4564.475 kb on + strand, within AO353_20845 at 4564.475 kb on + strand, within AO353_20845 at 4564.475 kb on + strand, within AO353_20845 at 4564.475 kb on + strand, within AO353_20845 at 4564.475 kb on + strand, within AO353_20845 at 4564.476 kb on - strand, within AO353_20845 at 4564.476 kb on - strand, within AO353_20845 at 4564.566 kb on - strand, within AO353_20845 at 4564.808 kb on + strand, within AO353_20845 at 4564.808 kb on + strand, within AO353_20845 at 4564.809 kb on - strand, within AO353_20845 at 4564.809 kb on - strand, within AO353_20845 at 4564.907 kb on - strand, within AO353_20845 at 4564.919 kb on + strand, within AO353_20845 at 4564.919 kb on + strand, within AO353_20845 at 4564.920 kb on - strand, within AO353_20845 at 4564.920 kb on - strand, within AO353_20845 at 4564.944 kb on - strand, within AO353_20845 at 4564.944 kb on - strand, within AO353_20845 at 4564.944 kb on - strand, within AO353_20845 at 4565.084 kb on + strand at 4565.183 kb on + strand at 4565.183 kb on + strand at 4565.183 kb on + strand at 4565.183 kb on + strand at 4565.183 kb on + strand at 4565.183 kb on + strand at 4565.183 kb on + strand at 4565.183 kb on + strand at 4565.184 kb on - strand at 4565.184 kb on - strand at 4565.184 kb on - strand at 4565.184 kb on - strand at 4565.219 kb on + strand at 4565.219 kb on + strand at 4565.220 kb on - strand at 4565.228 kb on + strand at 4565.228 kb on + strand at 4565.228 kb on + strand at 4565.228 kb on + strand at 4565.228 kb on + strand at 4565.229 kb on - strand at 4565.229 kb on - strand at 4565.229 kb on - strand at 4565.229 kb on - strand at 4565.229 kb on - strand at 4565.229 kb on - strand at 4565.261 kb on + strand, within AO353_20850 at 4565.261 kb on + strand, within AO353_20850 at 4565.261 kb on + strand, within AO353_20850 at 4565.261 kb on + strand, within AO353_20850 at 4565.262 kb on - strand, within AO353_20850 at 4565.262 kb on - strand, within AO353_20850 at 4565.262 kb on - strand, within AO353_20850 at 4565.272 kb on + strand, within AO353_20850 at 4565.272 kb on + strand, within AO353_20850 at 4565.272 kb on + strand, within AO353_20850 at 4565.272 kb on + strand, within AO353_20850 at 4565.272 kb on + strand, within AO353_20850 at 4565.273 kb on - strand, within AO353_20850 at 4565.329 kb on + strand, within AO353_20850 at 4565.329 kb on + strand, within AO353_20850 at 4565.329 kb on + strand, within AO353_20850 at 4565.330 kb on - strand, within AO353_20850 at 4565.330 kb on - strand, within AO353_20850 at 4565.330 kb on - strand, within AO353_20850 at 4565.330 kb on - strand, within AO353_20850 at 4565.330 kb on - strand, within AO353_20850 at 4565.330 kb on - strand, within AO353_20850 at 4565.330 kb on - strand, within AO353_20850 at 4565.330 kb on - strand, within AO353_20850 at 4565.330 kb on - strand, within AO353_20850 at 4565.330 kb on - strand, within AO353_20850 at 4565.369 kb on + strand, within AO353_20850 at 4565.370 kb on - strand, within AO353_20850 at 4565.370 kb on - strand, within AO353_20850 at 4565.370 kb on - strand, within AO353_20850 at 4565.370 kb on - strand, within AO353_20850 at 4565.370 kb on - strand at 4565.469 kb on - strand at 4565.501 kb on + strand at 4565.501 kb on + strand at 4565.501 kb on + strand at 4565.501 kb on + strand at 4565.502 kb on - strand at 4565.502 kb on - strand at 4565.502 kb on - strand at 4565.502 kb on - strand at 4565.502 kb on - strand at 4565.502 kb on - strand at 4565.519 kb on + strand at 4565.520 kb on - strand at 4565.539 kb on + strand at 4565.540 kb on - strand at 4565.577 kb on - strand at 4565.597 kb on - strand, within AO353_20855 at 4565.597 kb on - strand, within AO353_20855 at 4565.597 kb on - strand, within AO353_20855 at 4565.636 kb on + strand, within AO353_20855 at 4565.757 kb on + strand, within AO353_20855 at 4565.758 kb on - strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.761 kb on + strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.762 kb on - strand, within AO353_20855 at 4565.803 kb on + strand, within AO353_20855 at 4565.803 kb on + strand, within AO353_20855 at 4565.804 kb on - strand, within AO353_20855 at 4565.804 kb on - strand, within AO353_20855 at 4565.847 kb on + strand at 4565.847 kb on + strand at 4565.847 kb on + strand at 4565.847 kb on + strand at 4565.847 kb on + strand at 4565.847 kb on + strand at 4565.847 kb on + strand at 4565.848 kb on - strand at 4565.848 kb on - strand at 4565.848 kb on - strand at 4565.848 kb on - strand at 4565.848 kb on - strand at 4565.855 kb on + strand at 4565.855 kb on + strand at 4565.855 kb on + strand at 4565.859 kb on + strand at 4565.859 kb on + strand at 4565.859 kb on + strand at 4565.859 kb on + strand at 4565.859 kb on + strand at 4565.859 kb on + strand at 4565.860 kb on - strand at 4565.860 kb on - strand at 4565.860 kb on - strand at 4565.860 kb on - strand at 4565.860 kb on - strand at 4565.875 kb on - strand at 4565.875 kb on - strand at 4565.875 kb on - strand at 4565.909 kb on + strand at 4565.909 kb on + strand at 4565.909 kb on + strand at 4565.909 kb on + strand at 4565.910 kb on - strand at 4566.010 kb on + strand at 4566.010 kb on + strand at 4566.011 kb on - strand at 4566.054 kb on + strand at 4566.093 kb on + strand, within AO353_20860 at 4566.093 kb on + strand, within AO353_20860 at 4566.094 kb on - strand, within AO353_20860 at 4566.122 kb on + strand, within AO353_20860
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 4,563,234 + AO353_20835 0.48 -0.7 4,563,234 + AO353_20835 0.48 -0.1 4,563,234 + AO353_20835 0.48 -0.5 4,563,235 - AO353_20835 0.48 -1.3 4,563,235 - AO353_20835 0.48 -0.7 4,563,235 - AO353_20835 0.48 -1.3 4,563,235 - AO353_20835 0.48 -2.0 4,563,235 - AO353_20835 0.48 -0.3 4,563,235 - AO353_20835 0.48 -0.7 4,563,333 + AO353_20835 0.59 +0.8 4,563,333 + AO353_20835 0.59 -1.7 4,563,333 + AO353_20835 0.59 +0.1 4,563,688 + -0.7 4,563,689 - -0.0 4,563,689 - +0.1 4,563,689 - +0.3 4,563,865 + AO353_20840 0.39 -0.4 4,563,865 + AO353_20840 0.39 +0.9 4,563,865 + AO353_20840 0.39 -1.1 4,564,018 + AO353_20840 0.77 +0.2 4,564,024 - AO353_20840 0.78 +0.0 4,564,024 - AO353_20840 0.78 +0.1 4,564,074 - -0.7 4,564,074 - -0.6 4,564,109 + -0.8 4,564,110 - -0.7 4,564,110 - +1.8 4,564,110 - +0.9 4,564,135 - -0.8 4,564,156 + -0.3 4,564,156 + -0.5 4,564,156 + -1.1 4,564,156 + -1.6 4,564,157 - -1.1 4,564,157 - -0.5 4,564,157 - -0.7 4,564,157 - -0.3 4,564,160 + -1.3 4,564,160 + -0.3 4,564,160 + -0.1 4,564,160 + +0.5 4,564,160 + -1.1 4,564,160 + +2.0 4,564,160 + +0.2 4,564,160 + +0.9 4,564,160 + +0.9 4,564,160 + +0.5 4,564,161 - -0.4 4,564,161 - -0.9 4,564,161 - +3.5 4,564,161 - -0.3 4,564,161 - -0.2 4,564,161 - -1.2 4,564,161 - +0.5 4,564,161 - -1.3 4,564,225 + -0.3 4,564,252 - -0.5 4,564,252 - +0.1 4,564,252 - -0.6 4,564,348 + AO353_20845 0.19 -1.5 4,564,436 + AO353_20845 0.27 +0.0 4,564,436 + AO353_20845 0.27 -2.0 4,564,437 - AO353_20845 0.27 -2.3 4,564,475 + AO353_20845 0.31 +0.4 4,564,475 + AO353_20845 0.31 -0.7 4,564,475 + AO353_20845 0.31 +2.9 4,564,475 + AO353_20845 0.31 +1.0 4,564,475 + AO353_20845 0.31 -1.5 4,564,476 - AO353_20845 0.31 -0.9 4,564,476 - AO353_20845 0.31 +0.6 4,564,566 - AO353_20845 0.40 -1.1 4,564,808 + AO353_20845 0.63 +0.9 4,564,808 + AO353_20845 0.63 +1.0 4,564,809 - AO353_20845 0.63 +0.9 4,564,809 - AO353_20845 0.63 -0.3 4,564,907 - AO353_20845 0.73 -1.4 4,564,919 + AO353_20845 0.74 -1.3 4,564,919 + AO353_20845 0.74 -0.5 4,564,920 - AO353_20845 0.74 -2.5 4,564,920 - AO353_20845 0.74 -1.9 4,564,944 - AO353_20845 0.76 -0.9 4,564,944 - AO353_20845 0.76 -1.5 4,564,944 - AO353_20845 0.76 -1.7 4,565,084 + +1.7 4,565,183 + +0.6 4,565,183 + +0.6 4,565,183 + +0.5 4,565,183 + -0.3 4,565,183 + -0.7 4,565,183 + +0.6 4,565,183 + -1.9 4,565,183 + +0.5 4,565,184 - -1.4 4,565,184 - -0.6 4,565,184 - -1.9 4,565,184 - +0.6 4,565,219 + -1.5 4,565,219 + -0.5 4,565,220 - +0.3 4,565,228 + +2.0 4,565,228 + -1.4 4,565,228 + -0.4 4,565,228 + +0.1 4,565,228 + -0.8 4,565,229 - +0.6 4,565,229 - -0.9 4,565,229 - -0.7 4,565,229 - -0.1 4,565,229 - -0.1 4,565,229 - -0.9 4,565,261 + AO353_20850 0.17 -1.1 4,565,261 + AO353_20850 0.17 +0.2 4,565,261 + AO353_20850 0.17 +0.1 4,565,261 + AO353_20850 0.17 +0.8 4,565,262 - AO353_20850 0.17 -0.4 4,565,262 - AO353_20850 0.17 -0.2 4,565,262 - AO353_20850 0.17 +1.5 4,565,272 + AO353_20850 0.22 +1.2 4,565,272 + AO353_20850 0.22 +0.6 4,565,272 + AO353_20850 0.22 +1.3 4,565,272 + AO353_20850 0.22 -0.0 4,565,272 + AO353_20850 0.22 -1.1 4,565,273 - AO353_20850 0.23 -1.7 4,565,329 + AO353_20850 0.50 -0.4 4,565,329 + AO353_20850 0.50 +0.2 4,565,329 + AO353_20850 0.50 -2.5 4,565,330 - AO353_20850 0.50 -1.9 4,565,330 - AO353_20850 0.50 +1.5 4,565,330 - AO353_20850 0.50 -0.9 4,565,330 - AO353_20850 0.50 +0.1 4,565,330 - AO353_20850 0.50 +0.0 4,565,330 - AO353_20850 0.50 -2.1 4,565,330 - AO353_20850 0.50 +1.0 4,565,330 - AO353_20850 0.50 -0.2 4,565,330 - AO353_20850 0.50 +0.1 4,565,330 - AO353_20850 0.50 -0.2 4,565,369 + AO353_20850 0.70 -0.5 4,565,370 - AO353_20850 0.70 +1.0 4,565,370 - AO353_20850 0.70 +0.0 4,565,370 - AO353_20850 0.70 -0.3 4,565,370 - AO353_20850 0.70 -0.3 4,565,370 - +2.0 4,565,469 - -0.7 4,565,501 + -0.4 4,565,501 + -1.5 4,565,501 + -0.5 4,565,501 + -1.7 4,565,502 - -0.5 4,565,502 - +0.9 4,565,502 - +0.5 4,565,502 - -1.4 4,565,502 - +0.2 4,565,502 - -0.8 4,565,519 + +0.3 4,565,520 - +1.2 4,565,539 + +1.5 4,565,540 - -0.0 4,565,577 - -0.5 4,565,597 - AO353_20855 0.12 +0.8 4,565,597 - AO353_20855 0.12 +0.4 4,565,597 - AO353_20855 0.12 -0.7 4,565,636 + AO353_20855 0.25 -1.7 4,565,757 + AO353_20855 0.65 +1.5 4,565,758 - AO353_20855 0.65 -0.3 4,565,761 + AO353_20855 0.66 +0.6 4,565,761 + AO353_20855 0.66 +1.5 4,565,761 + AO353_20855 0.66 +0.8 4,565,761 + AO353_20855 0.66 +0.9 4,565,761 + AO353_20855 0.66 -1.9 4,565,761 + AO353_20855 0.66 -2.0 4,565,761 + AO353_20855 0.66 +0.5 4,565,761 + AO353_20855 0.66 +0.8 4,565,761 + AO353_20855 0.66 -0.2 4,565,761 + AO353_20855 0.66 +0.3 4,565,761 + AO353_20855 0.66 -1.3 4,565,761 + AO353_20855 0.66 +2.2 4,565,761 + AO353_20855 0.66 -1.3 4,565,761 + AO353_20855 0.66 -0.9 4,565,761 + AO353_20855 0.66 -0.2 4,565,762 - AO353_20855 0.66 +0.1 4,565,762 - AO353_20855 0.66 -0.1 4,565,762 - AO353_20855 0.66 -0.4 4,565,762 - AO353_20855 0.66 -0.1 4,565,762 - AO353_20855 0.66 -0.5 4,565,762 - AO353_20855 0.66 -0.4 4,565,762 - AO353_20855 0.66 -0.6 4,565,762 - AO353_20855 0.66 +1.0 4,565,762 - AO353_20855 0.66 +1.5 4,565,762 - AO353_20855 0.66 -1.7 4,565,762 - AO353_20855 0.66 +0.0 4,565,762 - AO353_20855 0.66 +0.1 4,565,762 - AO353_20855 0.66 +2.0 4,565,762 - AO353_20855 0.66 -0.1 4,565,762 - AO353_20855 0.66 +1.5 4,565,762 - AO353_20855 0.66 +0.8 4,565,762 - AO353_20855 0.66 -1.4 4,565,762 - AO353_20855 0.66 -0.9 4,565,803 + AO353_20855 0.80 -0.1 4,565,803 + AO353_20855 0.80 -0.8 4,565,804 - AO353_20855 0.80 +1.1 4,565,804 - AO353_20855 0.80 -2.0 4,565,847 + -0.3 4,565,847 + -0.2 4,565,847 + -0.1 4,565,847 + +0.2 4,565,847 + +0.4 4,565,847 + -0.9 4,565,847 + -0.1 4,565,848 - +0.5 4,565,848 - +0.8 4,565,848 - -0.1 4,565,848 - -0.1 4,565,848 - -0.7 4,565,855 + -2.5 4,565,855 + -1.4 4,565,855 + -1.1 4,565,859 + -1.4 4,565,859 + -1.0 4,565,859 + +0.2 4,565,859 + -1.5 4,565,859 + -0.5 4,565,859 + +2.6 4,565,860 - -0.7 4,565,860 - +0.6 4,565,860 - -0.9 4,565,860 - -1.5 4,565,860 - +0.3 4,565,875 - +0.3 4,565,875 - -1.1 4,565,875 - +0.5 4,565,909 + +2.0 4,565,909 + +0.5 4,565,909 + -0.4 4,565,909 + -0.1 4,565,910 - +0.3 4,566,010 + +0.1 4,566,010 + -0.5 4,566,011 - -0.3 4,566,054 + -0.4 4,566,093 + AO353_20860 0.21 +0.5 4,566,093 + AO353_20860 0.21 +0.5 4,566,094 - AO353_20860 0.21 -0.3 4,566,122 + AO353_20860 0.30 -1.4
Or see this region's nucleotide sequence