Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_831

Experiment: LB no stress 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_830 and Pf6N2E2_831 are separated by 57 nucleotidesPf6N2E2_831 and Pf6N2E2_832 are separated by 48 nucleotides Pf6N2E2_830 - Long-chain fatty acid transport protein, at 968,049 to 969,320 _830 Pf6N2E2_831 - Ketoacyl reductase hetN (EC 1.3.1.-), at 969,378 to 970,163 _831 Pf6N2E2_832 - Outer membrane component of tripartite multidrug resistance system, at 970,212 to 971,675 _832 Position (kb) 969 970 971Strain fitness (log2 ratio) -2 -1 0 1 2at 968.412 kb on + strand, within Pf6N2E2_830at 968.413 kb on - strand, within Pf6N2E2_830at 968.466 kb on + strand, within Pf6N2E2_830at 968.517 kb on + strand, within Pf6N2E2_830at 968.517 kb on + strand, within Pf6N2E2_830at 968.518 kb on - strand, within Pf6N2E2_830at 968.518 kb on - strand, within Pf6N2E2_830at 968.518 kb on - strand, within Pf6N2E2_830at 968.718 kb on + strand, within Pf6N2E2_830at 968.718 kb on + strand, within Pf6N2E2_830at 968.718 kb on + strand, within Pf6N2E2_830at 968.736 kb on + strand, within Pf6N2E2_830at 968.737 kb on - strand, within Pf6N2E2_830at 968.737 kb on - strand, within Pf6N2E2_830at 968.805 kb on + strand, within Pf6N2E2_830at 968.806 kb on - strand, within Pf6N2E2_830at 968.806 kb on - strand, within Pf6N2E2_830at 968.886 kb on + strand, within Pf6N2E2_830at 968.886 kb on + strand, within Pf6N2E2_830at 968.887 kb on - strand, within Pf6N2E2_830at 968.887 kb on - strand, within Pf6N2E2_830at 968.898 kb on - strand, within Pf6N2E2_830at 969.037 kb on - strand, within Pf6N2E2_830at 969.037 kb on - strand, within Pf6N2E2_830at 969.038 kb on + strand, within Pf6N2E2_830at 969.198 kb on + strandat 969.204 kb on + strandat 969.204 kb on + strandat 969.204 kb on + strandat 969.204 kb on + strandat 969.205 kb on - strandat 969.205 kb on - strandat 969.258 kb on + strandat 969.258 kb on + strandat 969.258 kb on + strandat 969.258 kb on + strandat 969.258 kb on + strandat 969.259 kb on - strandat 969.259 kb on - strandat 969.296 kb on + strandat 969.297 kb on - strandat 969.680 kb on - strand, within Pf6N2E2_831at 969.697 kb on + strand, within Pf6N2E2_831at 969.697 kb on + strand, within Pf6N2E2_831at 969.698 kb on - strand, within Pf6N2E2_831at 969.725 kb on - strand, within Pf6N2E2_831at 970.087 kb on + strandat 970.195 kb on + strandat 970.196 kb on - strandat 970.391 kb on - strand, within Pf6N2E2_832at 970.437 kb on + strand, within Pf6N2E2_832at 970.717 kb on + strand, within Pf6N2E2_832at 970.717 kb on + strand, within Pf6N2E2_832at 970.718 kb on - strand, within Pf6N2E2_832at 970.800 kb on + strand, within Pf6N2E2_832at 970.801 kb on - strand, within Pf6N2E2_832at 970.814 kb on + strand, within Pf6N2E2_832at 970.999 kb on + strand, within Pf6N2E2_832at 970.999 kb on + strand, within Pf6N2E2_832at 970.999 kb on + strand, within Pf6N2E2_832at 971.024 kb on - strand, within Pf6N2E2_832at 971.082 kb on - strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.116 kb on + strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832at 971.117 kb on - strand, within Pf6N2E2_832

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 24 hours
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968,412 + Pf6N2E2_830 0.29 -1.0
968,413 - Pf6N2E2_830 0.29 +0.1
968,466 + Pf6N2E2_830 0.33 +1.0
968,517 + Pf6N2E2_830 0.37 -0.2
968,517 + Pf6N2E2_830 0.37 -1.2
968,518 - Pf6N2E2_830 0.37 +0.6
968,518 - Pf6N2E2_830 0.37 -0.2
968,518 - Pf6N2E2_830 0.37 +0.4
968,718 + Pf6N2E2_830 0.53 -0.9
968,718 + Pf6N2E2_830 0.53 -0.2
968,718 + Pf6N2E2_830 0.53 -1.2
968,736 + Pf6N2E2_830 0.54 +0.5
968,737 - Pf6N2E2_830 0.54 -0.2
968,737 - Pf6N2E2_830 0.54 -0.4
968,805 + Pf6N2E2_830 0.59 -0.7
968,806 - Pf6N2E2_830 0.60 +0.6
968,806 - Pf6N2E2_830 0.60 +0.9
968,886 + Pf6N2E2_830 0.66 +0.4
968,886 + Pf6N2E2_830 0.66 -0.6
968,887 - Pf6N2E2_830 0.66 -1.2
968,887 - Pf6N2E2_830 0.66 +2.0
968,898 - Pf6N2E2_830 0.67 -0.2
969,037 - Pf6N2E2_830 0.78 +0.7
969,037 - Pf6N2E2_830 0.78 +0.3
969,038 + Pf6N2E2_830 0.78 -0.5
969,198 + +0.7
969,204 + -0.6
969,204 + -0.2
969,204 + +1.4
969,204 + +0.1
969,205 - -0.6
969,205 - +0.9
969,258 + +0.4
969,258 + -0.7
969,258 + +0.4
969,258 + +0.4
969,258 + +0.1
969,259 - -0.6
969,259 - -0.4
969,296 + +0.6
969,297 - -0.5
969,680 - Pf6N2E2_831 0.38 -0.4
969,697 + Pf6N2E2_831 0.41 -1.8
969,697 + Pf6N2E2_831 0.41 +0.2
969,698 - Pf6N2E2_831 0.41 +0.4
969,725 - Pf6N2E2_831 0.44 -1.2
970,087 + -0.9
970,195 + -2.2
970,196 - +1.4
970,391 - Pf6N2E2_832 0.12 -0.2
970,437 + Pf6N2E2_832 0.15 +0.4
970,717 + Pf6N2E2_832 0.34 -0.6
970,717 + Pf6N2E2_832 0.34 -0.6
970,718 - Pf6N2E2_832 0.35 -1.5
970,800 + Pf6N2E2_832 0.40 -0.5
970,801 - Pf6N2E2_832 0.40 -0.6
970,814 + Pf6N2E2_832 0.41 +0.1
970,999 + Pf6N2E2_832 0.54 -1.4
970,999 + Pf6N2E2_832 0.54 -0.4
970,999 + Pf6N2E2_832 0.54 +1.5
971,024 - Pf6N2E2_832 0.55 +0.3
971,082 - Pf6N2E2_832 0.59 +0.9
971,116 + Pf6N2E2_832 0.62 +0.0
971,116 + Pf6N2E2_832 0.62 +0.2
971,116 + Pf6N2E2_832 0.62 +0.8
971,116 + Pf6N2E2_832 0.62 +0.6
971,116 + Pf6N2E2_832 0.62 -0.7
971,116 + Pf6N2E2_832 0.62 -1.2
971,116 + Pf6N2E2_832 0.62 -0.8
971,116 + Pf6N2E2_832 0.62 +0.3
971,116 + Pf6N2E2_832 0.62 -0.1
971,117 - Pf6N2E2_832 0.62 -0.2
971,117 - Pf6N2E2_832 0.62 -0.3
971,117 - Pf6N2E2_832 0.62 +0.3
971,117 - Pf6N2E2_832 0.62 +0.5
971,117 - Pf6N2E2_832 0.62 -0.4
971,117 - Pf6N2E2_832 0.62 -0.2
971,117 - Pf6N2E2_832 0.62 +0.5
971,117 - Pf6N2E2_832 0.62 -1.2
971,117 - Pf6N2E2_832 0.62 +0.4
971,117 - Pf6N2E2_832 0.62 +0.2

Or see this region's nucleotide sequence