Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4534

Experiment: LB no stress 24 hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_4532 and Pf6N2E2_4533 overlap by 14 nucleotidesPf6N2E2_4533 and Pf6N2E2_4534 are separated by 115 nucleotidesPf6N2E2_4534 and Pf6N2E2_4535 overlap by 4 nucleotides Pf6N2E2_4532 - Flagellum-specific ATP synthase FliI, at 5,266,996 to 5,268,351 _4532 Pf6N2E2_4533 - RspO, at 5,268,338 to 5,268,757 _4533 Pf6N2E2_4534 - hypothetical protein, at 5,268,873 to 5,269,319 _4534 Pf6N2E2_4535 - Type III secretion inner membrane protein (YscQ,homologous to flagellar export components), at 5,269,316 to 5,270,419 _4535 Position (kb) 5268 5269 5270Strain fitness (log2 ratio) -2 -1 0 1at 5267.885 kb on - strand, within Pf6N2E2_4532at 5267.950 kb on + strand, within Pf6N2E2_4532at 5267.951 kb on - strand, within Pf6N2E2_4532at 5267.951 kb on - strand, within Pf6N2E2_4532at 5267.952 kb on + strand, within Pf6N2E2_4532at 5267.953 kb on - strand, within Pf6N2E2_4532at 5267.953 kb on - strand, within Pf6N2E2_4532at 5267.953 kb on - strand, within Pf6N2E2_4532at 5267.953 kb on - strand, within Pf6N2E2_4532at 5268.003 kb on - strand, within Pf6N2E2_4532at 5268.337 kb on + strandat 5268.337 kb on + strandat 5268.337 kb on + strandat 5268.338 kb on - strandat 5268.728 kb on + strandat 5268.832 kb on - strandat 5268.939 kb on + strand, within Pf6N2E2_4534at 5269.208 kb on - strand, within Pf6N2E2_4534at 5269.208 kb on - strand, within Pf6N2E2_4534at 5269.208 kb on - strand, within Pf6N2E2_4534at 5269.501 kb on + strand, within Pf6N2E2_4535at 5269.502 kb on - strand, within Pf6N2E2_4535at 5269.502 kb on - strand, within Pf6N2E2_4535at 5269.502 kb on - strand, within Pf6N2E2_4535at 5269.502 kb on - strand, within Pf6N2E2_4535at 5269.645 kb on + strand, within Pf6N2E2_4535at 5269.646 kb on - strand, within Pf6N2E2_4535at 5270.136 kb on - strand, within Pf6N2E2_4535

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 24 hours
remove
5,267,885 - Pf6N2E2_4532 0.66 +0.5
5,267,950 + Pf6N2E2_4532 0.70 +0.6
5,267,951 - Pf6N2E2_4532 0.70 +0.3
5,267,951 - Pf6N2E2_4532 0.70 +0.8
5,267,952 + Pf6N2E2_4532 0.71 +0.0
5,267,953 - Pf6N2E2_4532 0.71 -0.8
5,267,953 - Pf6N2E2_4532 0.71 -1.5
5,267,953 - Pf6N2E2_4532 0.71 -0.4
5,267,953 - Pf6N2E2_4532 0.71 +0.3
5,268,003 - Pf6N2E2_4532 0.74 +0.0
5,268,337 + +0.8
5,268,337 + +1.7
5,268,337 + -0.0
5,268,338 - -2.0
5,268,728 + -0.1
5,268,832 - -0.7
5,268,939 + Pf6N2E2_4534 0.15 +1.2
5,269,208 - Pf6N2E2_4534 0.75 +0.5
5,269,208 - Pf6N2E2_4534 0.75 +0.1
5,269,208 - Pf6N2E2_4534 0.75 +0.0
5,269,501 + Pf6N2E2_4535 0.17 +0.3
5,269,502 - Pf6N2E2_4535 0.17 +0.8
5,269,502 - Pf6N2E2_4535 0.17 -1.0
5,269,502 - Pf6N2E2_4535 0.17 +0.3
5,269,502 - Pf6N2E2_4535 0.17 -0.2
5,269,645 + Pf6N2E2_4535 0.30 -1.2
5,269,646 - Pf6N2E2_4535 0.30 -0.0
5,270,136 - Pf6N2E2_4535 0.74 +0.2

Or see this region's nucleotide sequence