Experiment: LB no stress 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3803 and Pf6N2E2_3804 are separated by 70 nucleotides Pf6N2E2_3804 and Pf6N2E2_3805 are separated by 152 nucleotides
Pf6N2E2_3803 - Histidine ABC transporter, histidine-binding protein (TC 3.A.1), at 4,430,711 to 4,431,679
_3803
Pf6N2E2_3804 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 4,431,750 to 4,433,216
_3804
Pf6N2E2_3805 - Urocanate hydratase (EC 4.2.1.49) (from data) , at 4,433,369 to 4,435,057
_3805
Position (kb)
4431
4432
4433
4434 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4431.019 kb on - strand, within Pf6N2E2_3803 at 4431.019 kb on - strand, within Pf6N2E2_3803 at 4431.021 kb on + strand, within Pf6N2E2_3803 at 4431.021 kb on + strand, within Pf6N2E2_3803 at 4431.021 kb on + strand, within Pf6N2E2_3803 at 4431.022 kb on - strand, within Pf6N2E2_3803 at 4431.022 kb on - strand, within Pf6N2E2_3803 at 4431.022 kb on - strand, within Pf6N2E2_3803 at 4431.048 kb on + strand, within Pf6N2E2_3803 at 4431.048 kb on + strand, within Pf6N2E2_3803 at 4431.048 kb on + strand, within Pf6N2E2_3803 at 4431.105 kb on + strand, within Pf6N2E2_3803 at 4431.106 kb on - strand, within Pf6N2E2_3803 at 4431.123 kb on + strand, within Pf6N2E2_3803 at 4431.180 kb on + strand, within Pf6N2E2_3803 at 4431.228 kb on + strand, within Pf6N2E2_3803 at 4431.306 kb on + strand, within Pf6N2E2_3803 at 4431.306 kb on + strand, within Pf6N2E2_3803 at 4431.318 kb on + strand, within Pf6N2E2_3803 at 4431.318 kb on + strand, within Pf6N2E2_3803 at 4431.318 kb on + strand, within Pf6N2E2_3803 at 4431.319 kb on - strand, within Pf6N2E2_3803 at 4431.319 kb on - strand, within Pf6N2E2_3803 at 4431.319 kb on - strand, within Pf6N2E2_3803 at 4431.319 kb on - strand, within Pf6N2E2_3803 at 4431.319 kb on - strand, within Pf6N2E2_3803 at 4431.319 kb on - strand, within Pf6N2E2_3803 at 4431.319 kb on - strand, within Pf6N2E2_3803 at 4431.502 kb on - strand, within Pf6N2E2_3803 at 4431.680 kb on + strand at 4431.680 kb on + strand at 4431.680 kb on + strand at 4431.680 kb on + strand at 4431.680 kb on + strand at 4431.681 kb on - strand at 4431.681 kb on - strand at 4431.693 kb on + strand at 4431.693 kb on + strand at 4431.863 kb on - strand at 4431.863 kb on - strand at 4431.865 kb on + strand at 4431.866 kb on - strand at 4431.866 kb on - strand at 4431.866 kb on - strand at 4431.866 kb on - strand at 4431.943 kb on + strand, within Pf6N2E2_3804 at 4431.943 kb on + strand, within Pf6N2E2_3804 at 4431.943 kb on + strand, within Pf6N2E2_3804 at 4431.943 kb on + strand, within Pf6N2E2_3804 at 4431.960 kb on - strand, within Pf6N2E2_3804 at 4431.991 kb on + strand, within Pf6N2E2_3804 at 4431.991 kb on + strand, within Pf6N2E2_3804 at 4431.991 kb on + strand, within Pf6N2E2_3804 at 4432.060 kb on + strand, within Pf6N2E2_3804 at 4432.060 kb on + strand, within Pf6N2E2_3804 at 4432.081 kb on + strand, within Pf6N2E2_3804 at 4432.081 kb on + strand, within Pf6N2E2_3804 at 4432.081 kb on + strand, within Pf6N2E2_3804 at 4432.081 kb on + strand, within Pf6N2E2_3804 at 4432.084 kb on + strand, within Pf6N2E2_3804 at 4432.084 kb on + strand, within Pf6N2E2_3804 at 4432.084 kb on + strand, within Pf6N2E2_3804 at 4432.085 kb on - strand, within Pf6N2E2_3804 at 4432.085 kb on - strand, within Pf6N2E2_3804 at 4432.085 kb on - strand, within Pf6N2E2_3804 at 4432.085 kb on - strand, within Pf6N2E2_3804 at 4432.301 kb on - strand, within Pf6N2E2_3804 at 4432.348 kb on + strand, within Pf6N2E2_3804 at 4432.348 kb on + strand, within Pf6N2E2_3804 at 4432.348 kb on + strand, within Pf6N2E2_3804 at 4432.349 kb on - strand, within Pf6N2E2_3804 at 4432.393 kb on + strand, within Pf6N2E2_3804 at 4432.393 kb on + strand, within Pf6N2E2_3804 at 4432.393 kb on + strand, within Pf6N2E2_3804 at 4432.543 kb on + strand, within Pf6N2E2_3804 at 4432.543 kb on + strand, within Pf6N2E2_3804 at 4432.682 kb on - strand, within Pf6N2E2_3804 at 4432.682 kb on - strand, within Pf6N2E2_3804 at 4432.867 kb on + strand, within Pf6N2E2_3804 at 4432.867 kb on + strand, within Pf6N2E2_3804 at 4432.867 kb on + strand, within Pf6N2E2_3804 at 4432.868 kb on - strand, within Pf6N2E2_3804 at 4432.906 kb on + strand, within Pf6N2E2_3804 at 4432.906 kb on + strand, within Pf6N2E2_3804 at 4432.906 kb on + strand, within Pf6N2E2_3804 at 4432.907 kb on - strand, within Pf6N2E2_3804 at 4433.156 kb on - strand at 4433.156 kb on - strand at 4433.204 kb on + strand at 4433.371 kb on - strand at 4433.483 kb on + strand at 4433.925 kb on + strand, within Pf6N2E2_3805 at 4433.925 kb on + strand, within Pf6N2E2_3805 at 4433.925 kb on + strand, within Pf6N2E2_3805 at 4433.925 kb on + strand, within Pf6N2E2_3805 at 4433.925 kb on + strand, within Pf6N2E2_3805 at 4433.925 kb on + strand, within Pf6N2E2_3805 at 4433.925 kb on + strand, within Pf6N2E2_3805 at 4433.925 kb on + strand, within Pf6N2E2_3805 at 4433.925 kb on + strand, within Pf6N2E2_3805 at 4433.926 kb on - strand, within Pf6N2E2_3805 at 4433.926 kb on - strand, within Pf6N2E2_3805 at 4433.926 kb on - strand, within Pf6N2E2_3805 at 4433.926 kb on - strand, within Pf6N2E2_3805 at 4433.926 kb on - strand, within Pf6N2E2_3805 at 4433.926 kb on - strand, within Pf6N2E2_3805 at 4434.000 kb on + strand, within Pf6N2E2_3805 at 4434.000 kb on + strand, within Pf6N2E2_3805 at 4434.000 kb on + strand, within Pf6N2E2_3805 at 4434.001 kb on - strand, within Pf6N2E2_3805 at 4434.001 kb on - strand, within Pf6N2E2_3805 at 4434.001 kb on - strand, within Pf6N2E2_3805 at 4434.001 kb on - strand, within Pf6N2E2_3805 at 4434.079 kb on - strand, within Pf6N2E2_3805
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress 24 hours remove 4,431,019 - Pf6N2E2_3803 0.32 -0.9 4,431,019 - Pf6N2E2_3803 0.32 -1.7 4,431,021 + Pf6N2E2_3803 0.32 -0.6 4,431,021 + Pf6N2E2_3803 0.32 +0.8 4,431,021 + Pf6N2E2_3803 0.32 -1.6 4,431,022 - Pf6N2E2_3803 0.32 -0.3 4,431,022 - Pf6N2E2_3803 0.32 -0.5 4,431,022 - Pf6N2E2_3803 0.32 -0.0 4,431,048 + Pf6N2E2_3803 0.35 -1.2 4,431,048 + Pf6N2E2_3803 0.35 +0.3 4,431,048 + Pf6N2E2_3803 0.35 +0.1 4,431,105 + Pf6N2E2_3803 0.41 +0.7 4,431,106 - Pf6N2E2_3803 0.41 -0.6 4,431,123 + Pf6N2E2_3803 0.43 +0.4 4,431,180 + Pf6N2E2_3803 0.48 +0.2 4,431,228 + Pf6N2E2_3803 0.53 +0.5 4,431,306 + Pf6N2E2_3803 0.61 -1.0 4,431,306 + Pf6N2E2_3803 0.61 -1.3 4,431,318 + Pf6N2E2_3803 0.63 -0.2 4,431,318 + Pf6N2E2_3803 0.63 -1.3 4,431,318 + Pf6N2E2_3803 0.63 +0.3 4,431,319 - Pf6N2E2_3803 0.63 -0.7 4,431,319 - Pf6N2E2_3803 0.63 +1.2 4,431,319 - Pf6N2E2_3803 0.63 -0.2 4,431,319 - Pf6N2E2_3803 0.63 -1.5 4,431,319 - Pf6N2E2_3803 0.63 +0.0 4,431,319 - Pf6N2E2_3803 0.63 -0.7 4,431,319 - Pf6N2E2_3803 0.63 -1.5 4,431,502 - Pf6N2E2_3803 0.82 -0.4 4,431,680 + -0.3 4,431,680 + +0.3 4,431,680 + +0.1 4,431,680 + -0.1 4,431,680 + +0.5 4,431,681 - -0.4 4,431,681 - -0.5 4,431,693 + -0.4 4,431,693 + +2.0 4,431,863 - +1.4 4,431,863 - +0.6 4,431,865 + +0.8 4,431,866 - +1.1 4,431,866 - +0.8 4,431,866 - +1.7 4,431,866 - -2.0 4,431,943 + Pf6N2E2_3804 0.13 -0.8 4,431,943 + Pf6N2E2_3804 0.13 -1.2 4,431,943 + Pf6N2E2_3804 0.13 +0.8 4,431,943 + Pf6N2E2_3804 0.13 +0.8 4,431,960 - Pf6N2E2_3804 0.14 +0.8 4,431,991 + Pf6N2E2_3804 0.16 -0.4 4,431,991 + Pf6N2E2_3804 0.16 +0.9 4,431,991 + Pf6N2E2_3804 0.16 -0.3 4,432,060 + Pf6N2E2_3804 0.21 -0.4 4,432,060 + Pf6N2E2_3804 0.21 +0.5 4,432,081 + Pf6N2E2_3804 0.23 -0.3 4,432,081 + Pf6N2E2_3804 0.23 +0.1 4,432,081 + Pf6N2E2_3804 0.23 -1.2 4,432,081 + Pf6N2E2_3804 0.23 -0.4 4,432,084 + Pf6N2E2_3804 0.23 -1.2 4,432,084 + Pf6N2E2_3804 0.23 +0.3 4,432,084 + Pf6N2E2_3804 0.23 +0.3 4,432,085 - Pf6N2E2_3804 0.23 -0.7 4,432,085 - Pf6N2E2_3804 0.23 -0.9 4,432,085 - Pf6N2E2_3804 0.23 -1.6 4,432,085 - Pf6N2E2_3804 0.23 +0.9 4,432,301 - Pf6N2E2_3804 0.38 -0.3 4,432,348 + Pf6N2E2_3804 0.41 +1.0 4,432,348 + Pf6N2E2_3804 0.41 -0.5 4,432,348 + Pf6N2E2_3804 0.41 -0.9 4,432,349 - Pf6N2E2_3804 0.41 -0.2 4,432,393 + Pf6N2E2_3804 0.44 -1.4 4,432,393 + Pf6N2E2_3804 0.44 -1.2 4,432,393 + Pf6N2E2_3804 0.44 -0.2 4,432,543 + Pf6N2E2_3804 0.54 +0.1 4,432,543 + Pf6N2E2_3804 0.54 -1.0 4,432,682 - Pf6N2E2_3804 0.64 -1.3 4,432,682 - Pf6N2E2_3804 0.64 +0.4 4,432,867 + Pf6N2E2_3804 0.76 -2.3 4,432,867 + Pf6N2E2_3804 0.76 -0.3 4,432,867 + Pf6N2E2_3804 0.76 +0.3 4,432,868 - Pf6N2E2_3804 0.76 +0.4 4,432,906 + Pf6N2E2_3804 0.79 +0.4 4,432,906 + Pf6N2E2_3804 0.79 -1.3 4,432,906 + Pf6N2E2_3804 0.79 -0.3 4,432,907 - Pf6N2E2_3804 0.79 +0.7 4,433,156 - +0.4 4,433,156 - +0.4 4,433,204 + +0.8 4,433,371 - -1.2 4,433,483 + +1.7 4,433,925 + Pf6N2E2_3805 0.33 +0.7 4,433,925 + Pf6N2E2_3805 0.33 -0.7 4,433,925 + Pf6N2E2_3805 0.33 -0.4 4,433,925 + Pf6N2E2_3805 0.33 +1.0 4,433,925 + Pf6N2E2_3805 0.33 +0.3 4,433,925 + Pf6N2E2_3805 0.33 +0.3 4,433,925 + Pf6N2E2_3805 0.33 +0.2 4,433,925 + Pf6N2E2_3805 0.33 -1.3 4,433,925 + Pf6N2E2_3805 0.33 +1.1 4,433,926 - Pf6N2E2_3805 0.33 -1.1 4,433,926 - Pf6N2E2_3805 0.33 +1.6 4,433,926 - Pf6N2E2_3805 0.33 +0.5 4,433,926 - Pf6N2E2_3805 0.33 +0.1 4,433,926 - Pf6N2E2_3805 0.33 +0.1 4,433,926 - Pf6N2E2_3805 0.33 +0.1 4,434,000 + Pf6N2E2_3805 0.37 +0.1 4,434,000 + Pf6N2E2_3805 0.37 -0.9 4,434,000 + Pf6N2E2_3805 0.37 +0.3 4,434,001 - Pf6N2E2_3805 0.37 -0.1 4,434,001 - Pf6N2E2_3805 0.37 +0.5 4,434,001 - Pf6N2E2_3805 0.37 +0.7 4,434,001 - Pf6N2E2_3805 0.37 -0.5 4,434,079 - Pf6N2E2_3805 0.42 +1.8
Or see this region's nucleotide sequence