Experiment: LB no stress 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2124 and Pf6N2E2_2125 are separated by 137 nucleotides Pf6N2E2_2125 and Pf6N2E2_2126 are separated by 353 nucleotides Pf6N2E2_2126 and Pf6N2E2_2127 are separated by 121 nucleotides
Pf6N2E2_2124 - Mg(2+) transport ATPase protein C, at 2,528,526 to 2,529,023
_2124
Pf6N2E2_2125 - hypothetical protein, at 2,529,161 to 2,529,397
_2125
Pf6N2E2_2126 - 4Fe-4S ferredoxin, iron-sulfur binding, at 2,529,751 to 2,531,163
_2126
Pf6N2E2_2127 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 2,531,285 to 2,532,694
_2127
Position (kb)
2529
2530
2531
2532 Strain fitness (log2 ratio)
-2
-1
0
1 at 2529.128 kb on + strand at 2529.128 kb on + strand at 2529.128 kb on + strand at 2529.128 kb on + strand at 2529.128 kb on + strand at 2529.128 kb on + strand at 2529.128 kb on + strand at 2529.128 kb on + strand at 2529.129 kb on - strand at 2529.129 kb on - strand at 2529.129 kb on - strand at 2529.129 kb on - strand at 2529.129 kb on - strand at 2529.131 kb on + strand at 2529.131 kb on + strand at 2529.187 kb on + strand, within Pf6N2E2_2125 at 2529.188 kb on - strand, within Pf6N2E2_2125 at 2529.188 kb on - strand, within Pf6N2E2_2125 at 2529.188 kb on - strand, within Pf6N2E2_2125 at 2529.188 kb on - strand, within Pf6N2E2_2125 at 2529.470 kb on - strand at 2529.470 kb on - strand at 2529.560 kb on - strand at 2529.560 kb on - strand at 2529.577 kb on + strand at 2529.596 kb on + strand at 2529.597 kb on - strand at 2529.597 kb on - strand at 2529.599 kb on + strand at 2529.599 kb on + strand at 2529.600 kb on - strand at 2529.600 kb on - strand at 2529.712 kb on + strand at 2529.729 kb on - strand at 2529.759 kb on + strand at 2530.419 kb on + strand, within Pf6N2E2_2126 at 2530.419 kb on + strand, within Pf6N2E2_2126 at 2530.419 kb on + strand, within Pf6N2E2_2126 at 2530.419 kb on + strand, within Pf6N2E2_2126 at 2530.419 kb on + strand, within Pf6N2E2_2126 at 2530.419 kb on + strand, within Pf6N2E2_2126 at 2530.420 kb on - strand, within Pf6N2E2_2126 at 2530.420 kb on - strand, within Pf6N2E2_2126 at 2530.420 kb on - strand, within Pf6N2E2_2126 at 2530.420 kb on - strand, within Pf6N2E2_2126 at 2530.420 kb on - strand, within Pf6N2E2_2126 at 2530.420 kb on - strand, within Pf6N2E2_2126 at 2530.420 kb on - strand, within Pf6N2E2_2126 at 2530.420 kb on - strand, within Pf6N2E2_2126 at 2530.420 kb on - strand, within Pf6N2E2_2126 at 2530.420 kb on - strand, within Pf6N2E2_2126 at 2530.706 kb on - strand, within Pf6N2E2_2126 at 2530.706 kb on - strand, within Pf6N2E2_2126 at 2530.900 kb on + strand, within Pf6N2E2_2126 at 2530.900 kb on + strand, within Pf6N2E2_2126 at 2530.942 kb on + strand, within Pf6N2E2_2126 at 2530.942 kb on + strand, within Pf6N2E2_2126 at 2530.943 kb on - strand, within Pf6N2E2_2126 at 2531.119 kb on + strand at 2531.119 kb on + strand at 2531.119 kb on + strand at 2531.119 kb on + strand at 2531.119 kb on + strand at 2531.120 kb on - strand at 2531.120 kb on - strand at 2531.120 kb on - strand at 2531.120 kb on - strand at 2531.120 kb on - strand at 2531.120 kb on - strand at 2531.120 kb on - strand at 2531.170 kb on - strand at 2531.221 kb on + strand at 2531.222 kb on - strand at 2531.222 kb on - strand at 2531.259 kb on + strand at 2531.259 kb on + strand at 2531.260 kb on - strand at 2531.260 kb on - strand at 2531.390 kb on + strand at 2531.391 kb on - strand at 2531.391 kb on - strand at 2531.424 kb on - strand at 2531.424 kb on - strand at 2531.424 kb on - strand at 2531.424 kb on - strand at 2531.427 kb on - strand, within Pf6N2E2_2127 at 2531.569 kb on - strand, within Pf6N2E2_2127 at 2531.894 kb on + strand, within Pf6N2E2_2127 at 2531.894 kb on + strand, within Pf6N2E2_2127 at 2531.895 kb on - strand, within Pf6N2E2_2127 at 2531.895 kb on - strand, within Pf6N2E2_2127 at 2532.146 kb on + strand, within Pf6N2E2_2127 at 2532.147 kb on - strand, within Pf6N2E2_2127
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress 24 hours remove 2,529,128 + +1.0 2,529,128 + -2.4 2,529,128 + +0.3 2,529,128 + -1.2 2,529,128 + -0.9 2,529,128 + -0.2 2,529,128 + -0.3 2,529,128 + +0.6 2,529,129 - -0.6 2,529,129 - -0.3 2,529,129 - -1.4 2,529,129 - +0.5 2,529,129 - +0.3 2,529,131 + -0.7 2,529,131 + +0.1 2,529,187 + Pf6N2E2_2125 0.11 +0.9 2,529,188 - Pf6N2E2_2125 0.11 -0.9 2,529,188 - Pf6N2E2_2125 0.11 +0.1 2,529,188 - Pf6N2E2_2125 0.11 -0.4 2,529,188 - Pf6N2E2_2125 0.11 -1.0 2,529,470 - -0.4 2,529,470 - +0.4 2,529,560 - +0.6 2,529,560 - -0.6 2,529,577 + +0.4 2,529,596 + +0.5 2,529,597 - +0.4 2,529,597 - +0.3 2,529,599 + -0.6 2,529,599 + -1.7 2,529,600 - +1.4 2,529,600 - +1.1 2,529,712 + +1.4 2,529,729 - -0.4 2,529,759 + -2.1 2,530,419 + Pf6N2E2_2126 0.47 +0.1 2,530,419 + Pf6N2E2_2126 0.47 +0.6 2,530,419 + Pf6N2E2_2126 0.47 +0.8 2,530,419 + Pf6N2E2_2126 0.47 -2.5 2,530,419 + Pf6N2E2_2126 0.47 +0.1 2,530,419 + Pf6N2E2_2126 0.47 +1.6 2,530,420 - Pf6N2E2_2126 0.47 -1.7 2,530,420 - Pf6N2E2_2126 0.47 -1.1 2,530,420 - Pf6N2E2_2126 0.47 -0.8 2,530,420 - Pf6N2E2_2126 0.47 -0.6 2,530,420 - Pf6N2E2_2126 0.47 -1.7 2,530,420 - Pf6N2E2_2126 0.47 +0.9 2,530,420 - Pf6N2E2_2126 0.47 -1.2 2,530,420 - Pf6N2E2_2126 0.47 -0.5 2,530,420 - Pf6N2E2_2126 0.47 +0.3 2,530,420 - Pf6N2E2_2126 0.47 -1.1 2,530,706 - Pf6N2E2_2126 0.68 -1.4 2,530,706 - Pf6N2E2_2126 0.68 -0.9 2,530,900 + Pf6N2E2_2126 0.81 -0.4 2,530,900 + Pf6N2E2_2126 0.81 -1.5 2,530,942 + Pf6N2E2_2126 0.84 -2.3 2,530,942 + Pf6N2E2_2126 0.84 -0.5 2,530,943 - Pf6N2E2_2126 0.84 -1.5 2,531,119 + -2.2 2,531,119 + +0.6 2,531,119 + -1.0 2,531,119 + -0.1 2,531,119 + -0.2 2,531,120 - -0.9 2,531,120 - -2.7 2,531,120 - -1.4 2,531,120 - -0.4 2,531,120 - -0.4 2,531,120 - -0.5 2,531,120 - -0.2 2,531,170 - -1.2 2,531,221 + -2.1 2,531,222 - -0.2 2,531,222 - -1.2 2,531,259 + +0.7 2,531,259 + -0.8 2,531,260 - -0.7 2,531,260 - -1.1 2,531,390 + +0.2 2,531,391 - +0.1 2,531,391 - -0.4 2,531,424 - +0.1 2,531,424 - -0.4 2,531,424 - -1.4 2,531,424 - -0.6 2,531,427 - Pf6N2E2_2127 0.10 -1.7 2,531,569 - Pf6N2E2_2127 0.20 -0.4 2,531,894 + Pf6N2E2_2127 0.43 -2.6 2,531,894 + Pf6N2E2_2127 0.43 +0.3 2,531,895 - Pf6N2E2_2127 0.43 -0.5 2,531,895 - Pf6N2E2_2127 0.43 +0.2 2,532,146 + Pf6N2E2_2127 0.61 -1.2 2,532,147 - Pf6N2E2_2127 0.61 -2.2
Or see this region's nucleotide sequence