Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1983

Experiment: LB no stress 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1983 and Pf6N2E2_1984 are separated by 8 nucleotides Pf6N2E2_1983 - hypothetical protein, at 2,349,111 to 2,349,272 _1983 Pf6N2E2_1984 - probable exported protein STY4558, at 2,349,281 to 2,350,000 _1984 Position (kb) 2349 2350Strain fitness (log2 ratio) -2 -1 0 1at 2348.112 kb on - strandat 2348.189 kb on + strandat 2348.189 kb on + strandat 2348.190 kb on - strandat 2348.233 kb on + strandat 2348.234 kb on - strandat 2348.234 kb on - strandat 2348.252 kb on - strandat 2348.371 kb on + strandat 2348.371 kb on + strandat 2348.372 kb on - strandat 2348.372 kb on - strandat 2348.372 kb on - strandat 2348.590 kb on - strandat 2348.629 kb on + strandat 2348.629 kb on + strandat 2348.630 kb on - strandat 2348.630 kb on - strandat 2348.631 kb on + strandat 2348.631 kb on + strandat 2348.632 kb on - strandat 2348.632 kb on - strandat 2348.692 kb on + strandat 2348.693 kb on - strandat 2348.802 kb on - strandat 2348.857 kb on + strandat 2348.940 kb on - strandat 2348.940 kb on - strandat 2348.940 kb on - strandat 2349.136 kb on + strand, within Pf6N2E2_1983at 2349.137 kb on - strand, within Pf6N2E2_1983at 2349.187 kb on - strand, within Pf6N2E2_1983at 2349.187 kb on - strand, within Pf6N2E2_1983at 2349.187 kb on - strand, within Pf6N2E2_1983at 2349.281 kb on - strandat 2349.281 kb on - strandat 2349.298 kb on - strandat 2349.494 kb on - strand, within Pf6N2E2_1984at 2349.497 kb on + strand, within Pf6N2E2_1984at 2349.497 kb on + strandat 2349.567 kb on - strand, within Pf6N2E2_1984at 2349.598 kb on - strand, within Pf6N2E2_1984at 2349.669 kb on + strand, within Pf6N2E2_1984at 2349.859 kb on + strand, within Pf6N2E2_1984at 2349.860 kb on - strand, within Pf6N2E2_1984at 2349.904 kb on + strand, within Pf6N2E2_1984at 2350.099 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 24 hours
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2,348,112 - -0.2
2,348,189 + -0.7
2,348,189 + +1.0
2,348,190 - +1.2
2,348,233 + -1.8
2,348,234 - +0.8
2,348,234 - +0.7
2,348,252 - +0.4
2,348,371 + -0.4
2,348,371 + -0.5
2,348,372 - +1.2
2,348,372 - +0.2
2,348,372 - -0.4
2,348,590 - -0.3
2,348,629 + -0.2
2,348,629 + -0.8
2,348,630 - +0.9
2,348,630 - -0.0
2,348,631 + -0.0
2,348,631 + +0.4
2,348,632 - -0.0
2,348,632 - -0.2
2,348,692 + -0.5
2,348,693 - -1.7
2,348,802 - +0.5
2,348,857 + -0.3
2,348,940 - +0.3
2,348,940 - -0.8
2,348,940 - +0.1
2,349,136 + Pf6N2E2_1983 0.15 +0.4
2,349,137 - Pf6N2E2_1983 0.16 -0.4
2,349,187 - Pf6N2E2_1983 0.47 -1.3
2,349,187 - Pf6N2E2_1983 0.47 -0.0
2,349,187 - Pf6N2E2_1983 0.47 -1.2
2,349,281 - +1.6
2,349,281 - -1.5
2,349,298 - +1.2
2,349,494 - Pf6N2E2_1984 0.30 +1.5
2,349,497 + Pf6N2E2_1984 0.30 +0.7
2,349,497 + +0.5
2,349,567 - Pf6N2E2_1984 0.40 +0.6
2,349,598 - Pf6N2E2_1984 0.44 +1.1
2,349,669 + Pf6N2E2_1984 0.54 +0.5
2,349,859 + Pf6N2E2_1984 0.80 -0.3
2,349,860 - Pf6N2E2_1984 0.80 -0.3
2,349,904 + Pf6N2E2_1984 0.87 -0.8
2,350,099 + +0.5

Or see this region's nucleotide sequence