Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1765

Experiment: LB no stress 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1764 and Pf6N2E2_1765 are separated by 12 nucleotidesPf6N2E2_1765 and Pf6N2E2_1766 are separated by 96 nucleotides Pf6N2E2_1764 - Aldehyde dehydrogenase (EC 1.2.1.3), at 2,084,266 to 2,085,774 _1764 Pf6N2E2_1765 - hypothetical protein, at 2,085,787 to 2,087,091 _1765 Pf6N2E2_1766 - Outer membrane transporter, OMPP1/FadL/TodX family, at 2,087,188 to 2,088,243 _1766 Position (kb) 2085 2086 2087 2088Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2084.995 kb on - strand, within Pf6N2E2_1764at 2085.049 kb on + strand, within Pf6N2E2_1764at 2085.050 kb on - strand, within Pf6N2E2_1764at 2085.050 kb on - strand, within Pf6N2E2_1764at 2085.050 kb on - strand, within Pf6N2E2_1764at 2085.159 kb on + strand, within Pf6N2E2_1764at 2085.160 kb on - strand, within Pf6N2E2_1764at 2085.160 kb on - strand, within Pf6N2E2_1764at 2085.240 kb on - strand, within Pf6N2E2_1764at 2085.352 kb on + strand, within Pf6N2E2_1764at 2085.353 kb on - strand, within Pf6N2E2_1764at 2085.353 kb on - strand, within Pf6N2E2_1764at 2085.353 kb on - strand, within Pf6N2E2_1764at 2085.353 kb on - strand, within Pf6N2E2_1764at 2085.421 kb on + strand, within Pf6N2E2_1764at 2085.421 kb on + strand, within Pf6N2E2_1764at 2085.421 kb on + strand, within Pf6N2E2_1764at 2085.482 kb on + strand, within Pf6N2E2_1764at 2085.482 kb on + strand, within Pf6N2E2_1764at 2085.640 kb on - strandat 2085.675 kb on + strandat 2085.675 kb on + strandat 2085.902 kb on - strandat 2085.902 kb on - strandat 2086.210 kb on + strand, within Pf6N2E2_1765at 2086.236 kb on + strand, within Pf6N2E2_1765at 2086.236 kb on + strand, within Pf6N2E2_1765at 2086.237 kb on - strand, within Pf6N2E2_1765at 2086.312 kb on + strand, within Pf6N2E2_1765at 2086.346 kb on + strand, within Pf6N2E2_1765at 2086.347 kb on - strand, within Pf6N2E2_1765at 2086.571 kb on + strand, within Pf6N2E2_1765at 2086.579 kb on + strand, within Pf6N2E2_1765at 2086.628 kb on - strand, within Pf6N2E2_1765at 2086.637 kb on - strand, within Pf6N2E2_1765at 2086.637 kb on - strand, within Pf6N2E2_1765at 2086.639 kb on - strand, within Pf6N2E2_1765at 2086.831 kb on + strand, within Pf6N2E2_1765at 2086.832 kb on - strand, within Pf6N2E2_1765at 2086.925 kb on - strand, within Pf6N2E2_1765at 2086.925 kb on - strand, within Pf6N2E2_1765at 2087.138 kb on + strandat 2087.184 kb on - strandat 2087.302 kb on + strand, within Pf6N2E2_1766at 2087.302 kb on + strand, within Pf6N2E2_1766at 2087.464 kb on + strand, within Pf6N2E2_1766at 2087.464 kb on + strand, within Pf6N2E2_1766at 2087.479 kb on + strand, within Pf6N2E2_1766at 2087.480 kb on - strand, within Pf6N2E2_1766at 2087.518 kb on + strand, within Pf6N2E2_1766at 2087.521 kb on - strand, within Pf6N2E2_1766at 2087.521 kb on - strand, within Pf6N2E2_1766at 2087.578 kb on + strand, within Pf6N2E2_1766at 2087.579 kb on - strand, within Pf6N2E2_1766at 2087.647 kb on + strand, within Pf6N2E2_1766at 2087.648 kb on - strand, within Pf6N2E2_1766at 2087.702 kb on - strand, within Pf6N2E2_1766at 2087.738 kb on - strand, within Pf6N2E2_1766at 2087.973 kb on + strand, within Pf6N2E2_1766at 2087.973 kb on + strand, within Pf6N2E2_1766at 2087.973 kb on + strand, within Pf6N2E2_1766at 2087.974 kb on - strand, within Pf6N2E2_1766at 2088.031 kb on + strand, within Pf6N2E2_1766

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 24 hours
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2,084,995 - Pf6N2E2_1764 0.48 +1.5
2,085,049 + Pf6N2E2_1764 0.52 +1.5
2,085,050 - Pf6N2E2_1764 0.52 -0.3
2,085,050 - Pf6N2E2_1764 0.52 -1.9
2,085,050 - Pf6N2E2_1764 0.52 -0.9
2,085,159 + Pf6N2E2_1764 0.59 +1.0
2,085,160 - Pf6N2E2_1764 0.59 -0.2
2,085,160 - Pf6N2E2_1764 0.59 +0.9
2,085,240 - Pf6N2E2_1764 0.65 -0.3
2,085,352 + Pf6N2E2_1764 0.72 +0.4
2,085,353 - Pf6N2E2_1764 0.72 +2.8
2,085,353 - Pf6N2E2_1764 0.72 -0.3
2,085,353 - Pf6N2E2_1764 0.72 -1.2
2,085,353 - Pf6N2E2_1764 0.72 +0.5
2,085,421 + Pf6N2E2_1764 0.77 -2.9
2,085,421 + Pf6N2E2_1764 0.77 +1.5
2,085,421 + Pf6N2E2_1764 0.77 +0.9
2,085,482 + Pf6N2E2_1764 0.81 -0.3
2,085,482 + Pf6N2E2_1764 0.81 +0.2
2,085,640 - -0.5
2,085,675 + +0.1
2,085,675 + +0.6
2,085,902 - +0.3
2,085,902 - +1.2
2,086,210 + Pf6N2E2_1765 0.32 -0.1
2,086,236 + Pf6N2E2_1765 0.34 +2.2
2,086,236 + Pf6N2E2_1765 0.34 -1.4
2,086,237 - Pf6N2E2_1765 0.34 +3.8
2,086,312 + Pf6N2E2_1765 0.40 +0.1
2,086,346 + Pf6N2E2_1765 0.43 +0.7
2,086,347 - Pf6N2E2_1765 0.43 +0.5
2,086,571 + Pf6N2E2_1765 0.60 +1.0
2,086,579 + Pf6N2E2_1765 0.61 +0.9
2,086,628 - Pf6N2E2_1765 0.64 -0.7
2,086,637 - Pf6N2E2_1765 0.65 +0.1
2,086,637 - Pf6N2E2_1765 0.65 +0.6
2,086,639 - Pf6N2E2_1765 0.65 -0.1
2,086,831 + Pf6N2E2_1765 0.80 +0.5
2,086,832 - Pf6N2E2_1765 0.80 +1.5
2,086,925 - Pf6N2E2_1765 0.87 +0.5
2,086,925 - Pf6N2E2_1765 0.87 +1.1
2,087,138 + +0.1
2,087,184 - +0.6
2,087,302 + Pf6N2E2_1766 0.11 +0.1
2,087,302 + Pf6N2E2_1766 0.11 +1.0
2,087,464 + Pf6N2E2_1766 0.26 +0.8
2,087,464 + Pf6N2E2_1766 0.26 +0.1
2,087,479 + Pf6N2E2_1766 0.28 -1.3
2,087,480 - Pf6N2E2_1766 0.28 +1.2
2,087,518 + Pf6N2E2_1766 0.31 +0.0
2,087,521 - Pf6N2E2_1766 0.32 -0.0
2,087,521 - Pf6N2E2_1766 0.32 +0.2
2,087,578 + Pf6N2E2_1766 0.37 +0.3
2,087,579 - Pf6N2E2_1766 0.37 +1.2
2,087,647 + Pf6N2E2_1766 0.43 +0.7
2,087,648 - Pf6N2E2_1766 0.44 -0.3
2,087,702 - Pf6N2E2_1766 0.49 -1.3
2,087,738 - Pf6N2E2_1766 0.52 -0.1
2,087,973 + Pf6N2E2_1766 0.74 -0.1
2,087,973 + Pf6N2E2_1766 0.74 +1.0
2,087,973 + Pf6N2E2_1766 0.74 -0.4
2,087,974 - Pf6N2E2_1766 0.74 -0.5
2,088,031 + Pf6N2E2_1766 0.80 -0.7

Or see this region's nucleotide sequence