Experiment: LB no stress 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1574 and Pf6N2E2_1575 are separated by 32 nucleotides Pf6N2E2_1575 and Pf6N2E2_1576 are separated by 40 nucleotides
Pf6N2E2_1574 - hypothetical protein, at 1,838,756 to 1,840,564
_1574
Pf6N2E2_1575 - FIG00967398: hypothetical protein, at 1,840,597 to 1,841,652
_1575
Pf6N2E2_1576 - hypothetical protein, at 1,841,693 to 1,841,824
_1576
Position (kb) 1840
1841
1842 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1839.611 kb on - strand, within Pf6N2E2_1574 at 1839.743 kb on + strand, within Pf6N2E2_1574 at 1839.818 kb on + strand, within Pf6N2E2_1574 at 1839.819 kb on - strand, within Pf6N2E2_1574 at 1839.821 kb on + strand, within Pf6N2E2_1574 at 1839.821 kb on + strand, within Pf6N2E2_1574 at 1839.822 kb on - strand, within Pf6N2E2_1574 at 1839.822 kb on - strand, within Pf6N2E2_1574 at 1839.822 kb on - strand, within Pf6N2E2_1574 at 1839.827 kb on + strand, within Pf6N2E2_1574 at 1839.827 kb on + strand, within Pf6N2E2_1574 at 1839.828 kb on - strand, within Pf6N2E2_1574 at 1839.877 kb on - strand, within Pf6N2E2_1574 at 1839.959 kb on + strand, within Pf6N2E2_1574 at 1839.959 kb on + strand, within Pf6N2E2_1574 at 1840.091 kb on + strand, within Pf6N2E2_1574 at 1840.092 kb on - strand, within Pf6N2E2_1574 at 1840.092 kb on - strand, within Pf6N2E2_1574 at 1840.106 kb on + strand, within Pf6N2E2_1574 at 1840.107 kb on - strand, within Pf6N2E2_1574 at 1840.257 kb on - strand, within Pf6N2E2_1574 at 1840.257 kb on - strand, within Pf6N2E2_1574 at 1840.257 kb on - strand, within Pf6N2E2_1574 at 1840.277 kb on + strand, within Pf6N2E2_1574 at 1840.277 kb on + strand, within Pf6N2E2_1574 at 1840.335 kb on - strand, within Pf6N2E2_1574 at 1840.386 kb on - strand at 1840.387 kb on + strand at 1840.388 kb on - strand at 1840.457 kb on + strand at 1840.457 kb on + strand at 1840.568 kb on + strand at 1840.765 kb on - strand, within Pf6N2E2_1575 at 1840.765 kb on - strand, within Pf6N2E2_1575 at 1840.936 kb on + strand at 1840.936 kb on + strand, within Pf6N2E2_1575 at 1840.937 kb on - strand, within Pf6N2E2_1575 at 1840.937 kb on - strand, within Pf6N2E2_1575 at 1840.937 kb on - strand, within Pf6N2E2_1575 at 1840.937 kb on - strand, within Pf6N2E2_1575 at 1841.023 kb on + strand, within Pf6N2E2_1575 at 1841.065 kb on - strand, within Pf6N2E2_1575 at 1841.065 kb on - strand, within Pf6N2E2_1575 at 1841.167 kb on + strand, within Pf6N2E2_1575 at 1841.168 kb on - strand, within Pf6N2E2_1575 at 1841.595 kb on + strand at 1841.604 kb on + strand at 1841.694 kb on + strand at 1842.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress 24 hours remove 1,839,611 - Pf6N2E2_1574 0.47 +0.0 1,839,743 + Pf6N2E2_1574 0.55 +0.9 1,839,818 + Pf6N2E2_1574 0.59 +0.3 1,839,819 - Pf6N2E2_1574 0.59 -1.2 1,839,821 + Pf6N2E2_1574 0.59 +0.8 1,839,821 + Pf6N2E2_1574 0.59 -0.6 1,839,822 - Pf6N2E2_1574 0.59 -1.4 1,839,822 - Pf6N2E2_1574 0.59 +0.1 1,839,822 - Pf6N2E2_1574 0.59 +1.4 1,839,827 + Pf6N2E2_1574 0.59 -1.3 1,839,827 + Pf6N2E2_1574 0.59 -1.4 1,839,828 - Pf6N2E2_1574 0.59 -0.6 1,839,877 - Pf6N2E2_1574 0.62 -0.7 1,839,959 + Pf6N2E2_1574 0.67 +1.4 1,839,959 + Pf6N2E2_1574 0.67 -0.2 1,840,091 + Pf6N2E2_1574 0.74 +1.1 1,840,092 - Pf6N2E2_1574 0.74 -0.8 1,840,092 - Pf6N2E2_1574 0.74 +2.4 1,840,106 + Pf6N2E2_1574 0.75 -1.0 1,840,107 - Pf6N2E2_1574 0.75 +0.8 1,840,257 - Pf6N2E2_1574 0.83 +0.8 1,840,257 - Pf6N2E2_1574 0.83 +0.2 1,840,257 - Pf6N2E2_1574 0.83 +0.0 1,840,277 + Pf6N2E2_1574 0.84 -1.8 1,840,277 + Pf6N2E2_1574 0.84 +0.5 1,840,335 - Pf6N2E2_1574 0.87 +0.3 1,840,386 - -0.4 1,840,387 + -1.6 1,840,388 - +0.6 1,840,457 + -0.6 1,840,457 + -0.0 1,840,568 + +0.2 1,840,765 - Pf6N2E2_1575 0.16 -0.3 1,840,765 - Pf6N2E2_1575 0.16 +0.3 1,840,936 + +0.4 1,840,936 + Pf6N2E2_1575 0.32 +1.1 1,840,937 - Pf6N2E2_1575 0.32 +0.8 1,840,937 - Pf6N2E2_1575 0.32 +1.3 1,840,937 - Pf6N2E2_1575 0.32 +0.7 1,840,937 - Pf6N2E2_1575 0.32 -0.4 1,841,023 + Pf6N2E2_1575 0.40 +0.3 1,841,065 - Pf6N2E2_1575 0.44 +1.3 1,841,065 - Pf6N2E2_1575 0.44 -0.3 1,841,167 + Pf6N2E2_1575 0.54 +1.1 1,841,168 - Pf6N2E2_1575 0.54 +0.6 1,841,595 + +0.1 1,841,604 + -0.5 1,841,694 + -0.0 1,842,627 + +0.3
Or see this region's nucleotide sequence