Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23405

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23395 and AO353_23400 are separated by 143 nucleotidesAO353_23400 and AO353_23405 are separated by 194 nucleotidesAO353_23405 and AO353_23410 are separated by 69 nucleotidesAO353_23410 and AO353_23415 are separated by 276 nucleotides AO353_23395: AO353_23395 - hypothetical protein, at 5,127,865 to 5,128,494 _23395 AO353_23400: AO353_23400 - hypothetical protein, at 5,128,638 to 5,128,967 _23400 AO353_23405: AO353_23405 - hypothetical protein, at 5,129,162 to 5,129,362 _23405 AO353_23410: AO353_23410 - hypothetical protein, at 5,129,432 to 5,129,716 _23410 AO353_23415: AO353_23415 - lysine transporter LysE, at 5,129,993 to 5,130,580 _23415 Position (kb) 5129 5130Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5128.163 kb on + strand, within AO353_23395at 5128.164 kb on - strandat 5128.229 kb on + strand, within AO353_23395at 5128.230 kb on - strand, within AO353_23395at 5128.271 kb on - strand, within AO353_23395at 5128.331 kb on + strand, within AO353_23395at 5128.331 kb on + strand, within AO353_23395at 5128.332 kb on - strand, within AO353_23395at 5128.350 kb on + strand, within AO353_23395at 5128.350 kb on + strand, within AO353_23395at 5128.351 kb on - strand, within AO353_23395at 5128.351 kb on - strand, within AO353_23395at 5128.489 kb on - strandat 5128.530 kb on - strandat 5128.543 kb on + strandat 5128.543 kb on + strandat 5128.550 kb on - strandat 5128.834 kb on + strand, within AO353_23400at 5128.834 kb on + strand, within AO353_23400at 5128.834 kb on + strand, within AO353_23400at 5128.834 kb on + strand, within AO353_23400at 5128.834 kb on + strand, within AO353_23400at 5128.883 kb on - strand, within AO353_23400at 5128.959 kb on + strandat 5128.959 kb on + strandat 5128.959 kb on + strandat 5128.959 kb on + strandat 5128.959 kb on + strandat 5128.959 kb on + strandat 5128.959 kb on + strandat 5128.959 kb on + strandat 5128.959 kb on + strandat 5128.959 kb on + strandat 5128.959 kb on + strandat 5128.959 kb on + strandat 5128.959 kb on + strandat 5128.960 kb on - strandat 5128.960 kb on - strandat 5128.960 kb on - strandat 5128.960 kb on - strandat 5128.960 kb on - strandat 5128.960 kb on - strandat 5128.960 kb on - strandat 5128.960 kb on - strandat 5128.960 kb on - strandat 5128.960 kb on - strandat 5128.960 kb on - strandat 5128.960 kb on - strandat 5128.960 kb on - strandat 5128.960 kb on - strandat 5129.003 kb on - strandat 5129.036 kb on + strandat 5129.081 kb on + strandat 5129.081 kb on + strandat 5129.082 kb on - strandat 5129.092 kb on + strandat 5129.093 kb on - strandat 5129.105 kb on + strandat 5129.105 kb on + strandat 5129.106 kb on - strandat 5129.106 kb on - strandat 5129.278 kb on + strand, within AO353_23405at 5129.333 kb on + strand, within AO353_23405at 5129.334 kb on - strand, within AO353_23405at 5129.334 kb on - strand, within AO353_23405at 5129.334 kb on - strand, within AO353_23405at 5129.334 kb on - strand, within AO353_23405at 5129.384 kb on + strandat 5129.433 kb on + strandat 5129.433 kb on + strandat 5129.439 kb on + strandat 5129.440 kb on - strandat 5129.440 kb on - strandat 5129.549 kb on - strand, within AO353_23410at 5129.650 kb on + strand, within AO353_23410at 5129.650 kb on + strand, within AO353_23410at 5129.651 kb on - strand, within AO353_23410at 5129.701 kb on + strandat 5129.701 kb on + strandat 5129.701 kb on + strandat 5129.701 kb on + strandat 5129.701 kb on + strandat 5129.701 kb on + strandat 5129.701 kb on + strandat 5129.702 kb on - strandat 5129.702 kb on - strandat 5129.702 kb on - strandat 5129.849 kb on + strandat 5129.849 kb on + strandat 5129.852 kb on + strandat 5129.852 kb on + strandat 5129.852 kb on + strandat 5129.852 kb on + strandat 5129.852 kb on + strandat 5129.853 kb on - strandat 5129.853 kb on - strandat 5129.853 kb on - strandat 5129.853 kb on - strandat 5129.853 kb on - strandat 5129.853 kb on - strandat 5129.925 kb on + strandat 5129.925 kb on + strandat 5129.925 kb on + strandat 5129.925 kb on + strandat 5129.925 kb on + strandat 5129.925 kb on + strandat 5129.926 kb on - strandat 5129.933 kb on + strandat 5129.933 kb on + strandat 5129.934 kb on - strandat 5129.934 kb on - strandat 5129.948 kb on - strandat 5129.948 kb on - strandat 5129.975 kb on + strandat 5129.976 kb on - strandat 5129.976 kb on - strandat 5130.114 kb on + strand, within AO353_23415at 5130.114 kb on + strand, within AO353_23415at 5130.115 kb on - strand, within AO353_23415at 5130.115 kb on - strand, within AO353_23415at 5130.115 kb on - strand, within AO353_23415at 5130.180 kb on + strand, within AO353_23415at 5130.314 kb on + strand, within AO353_23415at 5130.314 kb on + strand, within AO353_23415at 5130.337 kb on - strand, within AO353_23415at 5130.337 kb on - strand, within AO353_23415

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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5,128,163 + AO353_23395 0.47 +0.4
5,128,164 - +0.5
5,128,229 + AO353_23395 0.58 -0.9
5,128,230 - AO353_23395 0.58 -0.9
5,128,271 - AO353_23395 0.64 -0.1
5,128,331 + AO353_23395 0.74 -0.6
5,128,331 + AO353_23395 0.74 +0.9
5,128,332 - AO353_23395 0.74 +0.0
5,128,350 + AO353_23395 0.77 +0.4
5,128,350 + AO353_23395 0.77 +0.8
5,128,351 - AO353_23395 0.77 +0.2
5,128,351 - AO353_23395 0.77 +0.2
5,128,489 - +0.3
5,128,530 - -1.9
5,128,543 + +1.5
5,128,543 + +0.5
5,128,550 - -0.7
5,128,834 + AO353_23400 0.59 -1.4
5,128,834 + AO353_23400 0.59 +2.3
5,128,834 + AO353_23400 0.59 -0.7
5,128,834 + AO353_23400 0.59 +0.7
5,128,834 + AO353_23400 0.59 -0.6
5,128,883 - AO353_23400 0.74 +0.8
5,128,959 + +0.6
5,128,959 + +0.9
5,128,959 + -1.1
5,128,959 + -3.3
5,128,959 + +0.7
5,128,959 + +1.5
5,128,959 + -0.3
5,128,959 + +0.3
5,128,959 + +1.6
5,128,959 + -0.2
5,128,959 + -0.9
5,128,959 + +0.6
5,128,959 + -0.3
5,128,960 - +1.7
5,128,960 - -1.5
5,128,960 - -0.8
5,128,960 - -1.2
5,128,960 - -0.5
5,128,960 - +0.9
5,128,960 - +0.1
5,128,960 - -0.5
5,128,960 - +2.0
5,128,960 - +1.3
5,128,960 - -0.5
5,128,960 - -1.7
5,128,960 - +0.4
5,128,960 - -0.9
5,129,003 - -0.7
5,129,036 + -1.9
5,129,081 + -1.1
5,129,081 + -1.1
5,129,082 - -0.6
5,129,092 + -0.5
5,129,093 - -0.5
5,129,105 + -0.4
5,129,105 + -0.5
5,129,106 - -0.2
5,129,106 - -0.2
5,129,278 + AO353_23405 0.58 -0.7
5,129,333 + AO353_23405 0.85 +0.4
5,129,334 - AO353_23405 0.86 -1.9
5,129,334 - AO353_23405 0.86 -1.9
5,129,334 - AO353_23405 0.86 +1.0
5,129,334 - AO353_23405 0.86 -1.7
5,129,384 + -1.8
5,129,433 + -0.7
5,129,433 + +0.3
5,129,439 + -2.1
5,129,440 - -1.1
5,129,440 - -0.9
5,129,549 - AO353_23410 0.41 +2.2
5,129,650 + AO353_23410 0.76 -1.7
5,129,650 + AO353_23410 0.76 -1.6
5,129,651 - AO353_23410 0.77 -0.3
5,129,701 + +2.4
5,129,701 + +0.8
5,129,701 + +2.1
5,129,701 + -1.7
5,129,701 + -0.9
5,129,701 + -1.0
5,129,701 + -1.7
5,129,702 - -0.1
5,129,702 - +0.3
5,129,702 - -0.4
5,129,849 + +1.3
5,129,849 + -0.7
5,129,852 + -1.0
5,129,852 + +0.9
5,129,852 + +0.1
5,129,852 + +0.6
5,129,852 + -2.0
5,129,853 - -0.9
5,129,853 - -0.1
5,129,853 - -1.3
5,129,853 - +0.3
5,129,853 - -1.7
5,129,853 - -0.1
5,129,925 + -1.4
5,129,925 + -0.0
5,129,925 + +0.3
5,129,925 + +0.2
5,129,925 + -0.1
5,129,925 + +0.1
5,129,926 - -0.4
5,129,933 + +0.5
5,129,933 + -1.7
5,129,934 - -0.7
5,129,934 - +1.9
5,129,948 - +0.4
5,129,948 - -1.7
5,129,975 + +0.6
5,129,976 - -1.6
5,129,976 - -1.1
5,130,114 + AO353_23415 0.21 +0.6
5,130,114 + AO353_23415 0.21 +0.0
5,130,115 - AO353_23415 0.21 +0.9
5,130,115 - AO353_23415 0.21 +0.6
5,130,115 - AO353_23415 0.21 +0.0
5,130,180 + AO353_23415 0.32 -0.7
5,130,314 + AO353_23415 0.55 -0.7
5,130,314 + AO353_23415 0.55 +0.3
5,130,337 - AO353_23415 0.59 +0.0
5,130,337 - AO353_23415 0.59 -0.8

Or see this region's nucleotide sequence