Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19960

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19955 and AO353_19960 are separated by 52 nucleotidesAO353_19960 and AO353_19965 are separated by 11 nucleotidesAO353_19965 and AO353_19970 are separated by 25 nucleotides AO353_19955: AO353_19955 - pyruvate dehydrogenase, at 4,387,527 to 4,388,507 _19955 AO353_19960: AO353_19960 - branched-chain alpha-keto acid dehydrogenase subunit E2, at 4,388,560 to 4,389,678 _19960 AO353_19965: AO353_19965 - phosphopantetheine-binding protein, at 4,389,690 to 4,389,932 _19965 AO353_19970: AO353_19970 - peptidase, at 4,389,958 to 4,390,551 _19970 Position (kb) 4388 4389 4390Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4387.630 kb on - strand, within AO353_19955at 4387.641 kb on + strand, within AO353_19955at 4387.641 kb on + strand, within AO353_19955at 4387.641 kb on + strand, within AO353_19955at 4387.642 kb on - strand, within AO353_19955at 4387.642 kb on - strand, within AO353_19955at 4387.642 kb on - strand, within AO353_19955at 4387.642 kb on - strand, within AO353_19955at 4387.642 kb on - strand, within AO353_19955at 4387.642 kb on - strand, within AO353_19955at 4387.642 kb on - strand, within AO353_19955at 4387.642 kb on - strand, within AO353_19955at 4387.685 kb on + strand, within AO353_19955at 4387.686 kb on - strand, within AO353_19955at 4387.765 kb on + strand, within AO353_19955at 4387.766 kb on - strand, within AO353_19955at 4387.766 kb on - strand, within AO353_19955at 4387.838 kb on + strand, within AO353_19955at 4387.838 kb on + strand, within AO353_19955at 4387.838 kb on + strand, within AO353_19955at 4387.838 kb on + strand, within AO353_19955at 4387.838 kb on + strand, within AO353_19955at 4387.838 kb on + strand, within AO353_19955at 4387.838 kb on + strand, within AO353_19955at 4387.838 kb on + strand, within AO353_19955at 4387.838 kb on + strand, within AO353_19955at 4387.838 kb on + strand, within AO353_19955at 4387.838 kb on + strand, within AO353_19955at 4387.838 kb on + strand, within AO353_19955at 4387.839 kb on - strand, within AO353_19955at 4387.839 kb on - strand, within AO353_19955at 4387.839 kb on - strand, within AO353_19955at 4387.839 kb on - strand, within AO353_19955at 4387.839 kb on - strand, within AO353_19955at 4387.839 kb on - strand, within AO353_19955at 4387.839 kb on - strand, within AO353_19955at 4387.839 kb on - strand, within AO353_19955at 4387.839 kb on - strand, within AO353_19955at 4387.839 kb on - strand, within AO353_19955at 4387.839 kb on - strand, within AO353_19955at 4387.938 kb on + strand, within AO353_19955at 4388.058 kb on + strand, within AO353_19955at 4388.058 kb on + strand, within AO353_19955at 4388.058 kb on + strand, within AO353_19955at 4388.552 kb on + strandat 4388.552 kb on + strandat 4388.553 kb on - strandat 4388.553 kb on - strandat 4388.553 kb on - strandat 4388.553 kb on - strandat 4388.669 kb on + strandat 4388.670 kb on - strandat 4388.670 kb on - strandat 4388.693 kb on + strand, within AO353_19960at 4388.693 kb on + strand, within AO353_19960at 4388.694 kb on - strand, within AO353_19960at 4388.704 kb on + strand, within AO353_19960at 4388.705 kb on - strand, within AO353_19960at 4388.814 kb on - strand, within AO353_19960at 4388.814 kb on - strand, within AO353_19960at 4388.814 kb on - strand, within AO353_19960at 4389.080 kb on - strand, within AO353_19960at 4389.080 kb on - strand, within AO353_19960at 4389.080 kb on - strand, within AO353_19960at 4389.080 kb on - strand, within AO353_19960at 4389.082 kb on + strand, within AO353_19960at 4389.082 kb on + strand, within AO353_19960at 4389.082 kb on + strand, within AO353_19960at 4389.082 kb on + strand, within AO353_19960at 4389.082 kb on + strand, within AO353_19960at 4389.083 kb on - strand, within AO353_19960at 4389.126 kb on - strand, within AO353_19960at 4389.176 kb on + strandat 4389.176 kb on + strand, within AO353_19960at 4389.176 kb on + strand, within AO353_19960at 4389.176 kb on + strand, within AO353_19960at 4389.177 kb on - strand, within AO353_19960at 4389.214 kb on + strand, within AO353_19960at 4389.214 kb on + strand, within AO353_19960at 4389.268 kb on - strand, within AO353_19960at 4389.339 kb on + strand, within AO353_19960at 4389.339 kb on + strand, within AO353_19960at 4389.339 kb on + strand, within AO353_19960at 4389.620 kb on - strandat 4389.737 kb on + strand, within AO353_19965at 4389.737 kb on + strand, within AO353_19965at 4389.737 kb on + strand, within AO353_19965at 4389.738 kb on - strand, within AO353_19965at 4389.738 kb on - strand, within AO353_19965at 4389.738 kb on - strand, within AO353_19965at 4389.766 kb on + strand, within AO353_19965at 4389.767 kb on - strand, within AO353_19965at 4389.767 kb on - strand, within AO353_19965at 4389.767 kb on - strand, within AO353_19965at 4389.767 kb on - strand, within AO353_19965at 4389.912 kb on + strandat 4389.912 kb on + strandat 4389.912 kb on + strandat 4389.913 kb on - strandat 4389.913 kb on - strandat 4389.913 kb on - strandat 4389.913 kb on - strandat 4389.913 kb on - strandat 4389.913 kb on - strandat 4389.913 kb on - strandat 4389.995 kb on + strandat 4390.097 kb on + strand, within AO353_19970at 4390.097 kb on + strand, within AO353_19970at 4390.098 kb on - strand, within AO353_19970at 4390.178 kb on + strand, within AO353_19970at 4390.178 kb on + strand, within AO353_19970at 4390.179 kb on - strand, within AO353_19970at 4390.179 kb on - strand, within AO353_19970at 4390.230 kb on + strand, within AO353_19970at 4390.231 kb on - strand, within AO353_19970at 4390.255 kb on + strand, within AO353_19970at 4390.256 kb on - strand, within AO353_19970at 4390.292 kb on + strand, within AO353_19970at 4390.293 kb on - strand, within AO353_19970at 4390.293 kb on - strand, within AO353_19970at 4390.293 kb on - strand, within AO353_19970at 4390.349 kb on + strand, within AO353_19970at 4390.349 kb on + strand, within AO353_19970at 4390.349 kb on + strand, within AO353_19970at 4390.349 kb on + strand, within AO353_19970at 4390.349 kb on + strand, within AO353_19970at 4390.349 kb on + strand, within AO353_19970at 4390.349 kb on + strand, within AO353_19970at 4390.349 kb on + strand, within AO353_19970at 4390.349 kb on + strand, within AO353_19970at 4390.349 kb on + strand, within AO353_19970at 4390.350 kb on - strand, within AO353_19970at 4390.350 kb on - strand, within AO353_19970at 4390.350 kb on - strand, within AO353_19970at 4390.350 kb on - strand, within AO353_19970at 4390.350 kb on - strand, within AO353_19970at 4390.350 kb on - strand, within AO353_19970at 4390.350 kb on - strand, within AO353_19970at 4390.350 kb on - strand, within AO353_19970at 4390.350 kb on - strand, within AO353_19970at 4390.350 kb on - strand, within AO353_19970at 4390.350 kb on - strand, within AO353_19970at 4390.350 kb on - strand, within AO353_19970at 4390.350 kb on - strand, within AO353_19970at 4390.403 kb on + strand, within AO353_19970at 4390.403 kb on + strand, within AO353_19970at 4390.403 kb on + strand, within AO353_19970at 4390.403 kb on + strand, within AO353_19970at 4390.403 kb on + strand, within AO353_19970at 4390.404 kb on - strand, within AO353_19970at 4390.404 kb on - strand, within AO353_19970at 4390.404 kb on - strand, within AO353_19970at 4390.404 kb on - strand, within AO353_19970at 4390.404 kb on - strand, within AO353_19970at 4390.424 kb on + strand, within AO353_19970at 4390.425 kb on - strand, within AO353_19970at 4390.510 kb on + strandat 4390.580 kb on - strandat 4390.580 kb on - strandat 4390.580 kb on - strandat 4390.590 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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4,387,630 - AO353_19955 0.10 +0.1
4,387,641 + AO353_19955 0.12 +0.2
4,387,641 + AO353_19955 0.12 +0.1
4,387,641 + AO353_19955 0.12 -0.0
4,387,642 - AO353_19955 0.12 +1.1
4,387,642 - AO353_19955 0.12 +0.1
4,387,642 - AO353_19955 0.12 -1.8
4,387,642 - AO353_19955 0.12 +0.1
4,387,642 - AO353_19955 0.12 -1.4
4,387,642 - AO353_19955 0.12 +0.3
4,387,642 - AO353_19955 0.12 -1.3
4,387,642 - AO353_19955 0.12 +0.7
4,387,685 + AO353_19955 0.16 +0.4
4,387,686 - AO353_19955 0.16 -0.4
4,387,765 + AO353_19955 0.24 +0.1
4,387,766 - AO353_19955 0.24 -0.2
4,387,766 - AO353_19955 0.24 -0.9
4,387,838 + AO353_19955 0.32 +0.1
4,387,838 + AO353_19955 0.32 +1.1
4,387,838 + AO353_19955 0.32 -0.6
4,387,838 + AO353_19955 0.32 -3.0
4,387,838 + AO353_19955 0.32 +0.3
4,387,838 + AO353_19955 0.32 -0.4
4,387,838 + AO353_19955 0.32 -1.0
4,387,838 + AO353_19955 0.32 -0.5
4,387,838 + AO353_19955 0.32 -0.3
4,387,838 + AO353_19955 0.32 -0.3
4,387,838 + AO353_19955 0.32 -0.8
4,387,838 + AO353_19955 0.32 -0.5
4,387,839 - AO353_19955 0.32 +0.7
4,387,839 - AO353_19955 0.32 +1.0
4,387,839 - AO353_19955 0.32 +0.6
4,387,839 - AO353_19955 0.32 +0.3
4,387,839 - AO353_19955 0.32 -1.0
4,387,839 - AO353_19955 0.32 -0.6
4,387,839 - AO353_19955 0.32 +0.7
4,387,839 - AO353_19955 0.32 -0.6
4,387,839 - AO353_19955 0.32 +0.1
4,387,839 - AO353_19955 0.32 +0.3
4,387,839 - AO353_19955 0.32 -0.2
4,387,938 + AO353_19955 0.42 +1.0
4,388,058 + AO353_19955 0.54 +0.9
4,388,058 + AO353_19955 0.54 +0.4
4,388,058 + AO353_19955 0.54 +0.2
4,388,552 + +2.6
4,388,552 + +0.6
4,388,553 - +0.2
4,388,553 - -0.4
4,388,553 - +0.4
4,388,553 - -0.8
4,388,669 + +0.6
4,388,670 - +0.6
4,388,670 - -0.7
4,388,693 + AO353_19960 0.12 -0.0
4,388,693 + AO353_19960 0.12 -1.0
4,388,694 - AO353_19960 0.12 -1.0
4,388,704 + AO353_19960 0.13 +0.5
4,388,705 - AO353_19960 0.13 -0.8
4,388,814 - AO353_19960 0.23 +2.0
4,388,814 - AO353_19960 0.23 -0.0
4,388,814 - AO353_19960 0.23 +0.2
4,389,080 - AO353_19960 0.46 -0.5
4,389,080 - AO353_19960 0.46 -1.3
4,389,080 - AO353_19960 0.46 -0.0
4,389,080 - AO353_19960 0.46 -0.6
4,389,082 + AO353_19960 0.47 +0.4
4,389,082 + AO353_19960 0.47 +0.2
4,389,082 + AO353_19960 0.47 +0.7
4,389,082 + AO353_19960 0.47 -0.3
4,389,082 + AO353_19960 0.47 +0.2
4,389,083 - AO353_19960 0.47 -0.0
4,389,126 - AO353_19960 0.51 -1.0
4,389,176 + +0.6
4,389,176 + AO353_19960 0.55 -1.0
4,389,176 + AO353_19960 0.55 -0.6
4,389,176 + AO353_19960 0.55 -1.3
4,389,177 - AO353_19960 0.55 -1.8
4,389,214 + AO353_19960 0.58 -1.1
4,389,214 + AO353_19960 0.58 -0.7
4,389,268 - AO353_19960 0.63 -2.4
4,389,339 + AO353_19960 0.70 -0.7
4,389,339 + AO353_19960 0.70 +1.6
4,389,339 + AO353_19960 0.70 -0.4
4,389,620 - +0.1
4,389,737 + AO353_19965 0.19 +0.8
4,389,737 + AO353_19965 0.19 -1.0
4,389,737 + AO353_19965 0.19 +0.7
4,389,738 - AO353_19965 0.20 -0.6
4,389,738 - AO353_19965 0.20 -0.8
4,389,738 - AO353_19965 0.20 -0.7
4,389,766 + AO353_19965 0.31 -1.6
4,389,767 - AO353_19965 0.32 +0.6
4,389,767 - AO353_19965 0.32 -0.2
4,389,767 - AO353_19965 0.32 -0.4
4,389,767 - AO353_19965 0.32 -0.4
4,389,912 + -0.3
4,389,912 + +0.1
4,389,912 + -0.8
4,389,913 - -0.4
4,389,913 - -0.8
4,389,913 - -0.0
4,389,913 - -0.3
4,389,913 - -1.0
4,389,913 - +0.4
4,389,913 - +0.8
4,389,995 + -0.1
4,390,097 + AO353_19970 0.23 -0.1
4,390,097 + AO353_19970 0.23 +0.1
4,390,098 - AO353_19970 0.24 -0.2
4,390,178 + AO353_19970 0.37 -0.6
4,390,178 + AO353_19970 0.37 +0.8
4,390,179 - AO353_19970 0.37 +0.8
4,390,179 - AO353_19970 0.37 -0.4
4,390,230 + AO353_19970 0.46 +0.1
4,390,231 - AO353_19970 0.46 +0.6
4,390,255 + AO353_19970 0.50 +0.1
4,390,256 - AO353_19970 0.50 -0.2
4,390,292 + AO353_19970 0.56 -0.7
4,390,293 - AO353_19970 0.56 +0.8
4,390,293 - AO353_19970 0.56 -0.5
4,390,293 - AO353_19970 0.56 -1.0
4,390,349 + AO353_19970 0.66 +1.3
4,390,349 + AO353_19970 0.66 -0.7
4,390,349 + AO353_19970 0.66 -1.1
4,390,349 + AO353_19970 0.66 +0.6
4,390,349 + AO353_19970 0.66 +0.9
4,390,349 + AO353_19970 0.66 -0.1
4,390,349 + AO353_19970 0.66 -0.1
4,390,349 + AO353_19970 0.66 +2.1
4,390,349 + AO353_19970 0.66 -1.8
4,390,349 + AO353_19970 0.66 -1.0
4,390,350 - AO353_19970 0.66 -1.5
4,390,350 - AO353_19970 0.66 +0.1
4,390,350 - AO353_19970 0.66 -0.0
4,390,350 - AO353_19970 0.66 -0.8
4,390,350 - AO353_19970 0.66 -0.9
4,390,350 - AO353_19970 0.66 -0.1
4,390,350 - AO353_19970 0.66 +1.2
4,390,350 - AO353_19970 0.66 -1.2
4,390,350 - AO353_19970 0.66 +0.6
4,390,350 - AO353_19970 0.66 +0.4
4,390,350 - AO353_19970 0.66 -0.8
4,390,350 - AO353_19970 0.66 -1.3
4,390,350 - AO353_19970 0.66 +0.0
4,390,403 + AO353_19970 0.75 +0.8
4,390,403 + AO353_19970 0.75 -2.6
4,390,403 + AO353_19970 0.75 -2.1
4,390,403 + AO353_19970 0.75 +1.6
4,390,403 + AO353_19970 0.75 +0.1
4,390,404 - AO353_19970 0.75 +0.5
4,390,404 - AO353_19970 0.75 -1.0
4,390,404 - AO353_19970 0.75 +1.3
4,390,404 - AO353_19970 0.75 +3.4
4,390,404 - AO353_19970 0.75 +1.6
4,390,424 + AO353_19970 0.78 +0.1
4,390,425 - AO353_19970 0.79 +1.2
4,390,510 + +1.3
4,390,580 - +0.1
4,390,580 - +0.5
4,390,580 - +0.7
4,390,590 - -0.0

Or see this region's nucleotide sequence