Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17165

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_17155 and AO353_17160 are separated by 179 nucleotidesAO353_17160 and AO353_17165 are separated by 454 nucleotidesAO353_17165 and AO353_17170 are separated by 681 nucleotides AO353_17155: AO353_17155 - RNA polymerase-associated protein RapA, at 3,792,682 to 3,795,528 _17155 AO353_17160: AO353_17160 - aspartate-semialdehyde dehydrogenase, at 3,795,708 to 3,796,049 _17160 AO353_17165: AO353_17165 - ATP-dependent helicase, at 3,796,504 to 3,796,620 _17165 AO353_17170: AO353_17170 - nuclease PIN, at 3,797,302 to 3,798,777 _17170 Position (kb) 3796 3797Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3795.515 kb on + strandat 3795.516 kb on - strandat 3795.516 kb on - strandat 3795.516 kb on - strandat 3795.516 kb on - strandat 3795.516 kb on - strandat 3795.560 kb on + strandat 3795.560 kb on + strandat 3795.560 kb on + strandat 3795.560 kb on + strandat 3795.560 kb on + strandat 3795.561 kb on - strandat 3795.561 kb on - strandat 3795.561 kb on - strandat 3795.561 kb on - strandat 3795.561 kb on - strandat 3795.562 kb on + strandat 3795.562 kb on + strandat 3795.562 kb on + strandat 3795.562 kb on + strandat 3795.562 kb on + strandat 3795.562 kb on + strandat 3795.562 kb on + strandat 3795.562 kb on + strandat 3795.562 kb on + strandat 3795.563 kb on - strandat 3795.563 kb on - strandat 3795.563 kb on - strandat 3795.603 kb on + strandat 3795.603 kb on + strandat 3795.604 kb on - strandat 3795.700 kb on + strandat 3795.700 kb on + strandat 3795.700 kb on + strandat 3795.701 kb on - strandat 3795.701 kb on - strandat 3795.703 kb on + strandat 3795.703 kb on + strandat 3795.703 kb on + strandat 3795.703 kb on + strandat 3795.704 kb on - strandat 3795.704 kb on - strandat 3795.704 kb on - strandat 3795.704 kb on - strandat 3795.704 kb on - strandat 3795.747 kb on - strand, within AO353_17160at 3795.824 kb on + strand, within AO353_17160at 3795.825 kb on - strand, within AO353_17160at 3796.054 kb on + strandat 3796.055 kb on - strandat 3796.055 kb on - strandat 3796.055 kb on - strandat 3796.055 kb on - strandat 3796.055 kb on - strandat 3796.149 kb on + strandat 3796.149 kb on + strandat 3796.149 kb on + strandat 3796.150 kb on - strandat 3796.150 kb on - strandat 3796.161 kb on + strandat 3796.162 kb on - strandat 3796.162 kb on - strandat 3796.162 kb on - strandat 3796.169 kb on + strandat 3796.169 kb on + strandat 3796.170 kb on - strandat 3796.186 kb on + strandat 3796.186 kb on + strandat 3796.186 kb on + strandat 3796.186 kb on + strandat 3796.186 kb on + strandat 3796.186 kb on + strandat 3796.186 kb on + strandat 3796.187 kb on - strandat 3796.187 kb on - strandat 3796.187 kb on - strandat 3796.187 kb on - strandat 3796.187 kb on - strandat 3796.187 kb on - strandat 3796.187 kb on - strandat 3796.187 kb on - strandat 3796.187 kb on - strandat 3796.260 kb on - strandat 3796.260 kb on - strandat 3796.260 kb on - strandat 3796.467 kb on - strandat 3796.602 kb on + strand, within AO353_17165at 3796.603 kb on - strand, within AO353_17165at 3796.603 kb on - strand, within AO353_17165at 3796.603 kb on - strand, within AO353_17165at 3796.603 kb on - strand, within AO353_17165at 3796.603 kb on - strand, within AO353_17165at 3796.608 kb on + strand, within AO353_17165at 3796.609 kb on - strandat 3796.618 kb on + strandat 3796.713 kb on + strandat 3796.713 kb on + strandat 3796.713 kb on + strandat 3796.713 kb on + strandat 3796.713 kb on - strandat 3796.714 kb on - strandat 3796.714 kb on - strandat 3796.714 kb on - strandat 3796.714 kb on - strandat 3796.714 kb on - strandat 3796.714 kb on - strandat 3796.714 kb on - strandat 3796.714 kb on - strandat 3796.714 kb on - strandat 3796.714 kb on - strandat 3796.719 kb on + strandat 3796.719 kb on + strandat 3796.719 kb on + strandat 3796.719 kb on + strandat 3796.720 kb on - strandat 3796.720 kb on - strandat 3796.720 kb on - strandat 3796.720 kb on - strandat 3796.720 kb on - strandat 3796.737 kb on - strandat 3796.793 kb on + strandat 3796.793 kb on + strandat 3796.793 kb on + strandat 3796.793 kb on + strandat 3796.793 kb on + strandat 3796.793 kb on + strandat 3796.794 kb on - strandat 3796.794 kb on - strandat 3796.794 kb on - strandat 3796.794 kb on - strandat 3796.794 kb on - strandat 3796.794 kb on - strandat 3796.794 kb on - strandat 3796.797 kb on + strandat 3796.797 kb on + strandat 3796.798 kb on - strandat 3796.798 kb on - strandat 3796.798 kb on - strandat 3796.798 kb on - strandat 3796.798 kb on - strandat 3796.971 kb on - strandat 3797.131 kb on + strandat 3797.131 kb on + strandat 3797.148 kb on + strandat 3797.149 kb on - strandat 3797.149 kb on - strandat 3797.149 kb on - strandat 3797.252 kb on - strandat 3797.299 kb on - strandat 3797.299 kb on - strandat 3797.299 kb on - strandat 3797.299 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,795,515 + +0.9
3,795,516 - +0.0
3,795,516 - +0.3
3,795,516 - -0.1
3,795,516 - -0.3
3,795,516 - -0.3
3,795,560 + -2.1
3,795,560 + -1.3
3,795,560 + -0.9
3,795,560 + +0.0
3,795,560 + +0.3
3,795,561 - +0.7
3,795,561 - +0.4
3,795,561 - -0.4
3,795,561 - +0.2
3,795,561 - +0.0
3,795,562 + -0.3
3,795,562 + +0.0
3,795,562 + +1.0
3,795,562 + -0.6
3,795,562 + +1.0
3,795,562 + -0.3
3,795,562 + +0.7
3,795,562 + -1.1
3,795,562 + -1.0
3,795,563 - -0.7
3,795,563 - +0.5
3,795,563 - -0.3
3,795,603 + -0.4
3,795,603 + +0.9
3,795,604 - +0.1
3,795,700 + +0.5
3,795,700 + +0.1
3,795,700 + +0.7
3,795,701 - -1.3
3,795,701 - +1.4
3,795,703 + +1.3
3,795,703 + +1.0
3,795,703 + +2.3
3,795,703 + -0.3
3,795,704 - -1.3
3,795,704 - +0.2
3,795,704 - +0.4
3,795,704 - -2.3
3,795,704 - -1.1
3,795,747 - AO353_17160 0.11 -1.8
3,795,824 + AO353_17160 0.34 -0.1
3,795,825 - AO353_17160 0.34 +0.8
3,796,054 + -0.6
3,796,055 - +1.3
3,796,055 - +0.1
3,796,055 - -1.8
3,796,055 - -0.4
3,796,055 - -0.0
3,796,149 + +1.2
3,796,149 + -0.4
3,796,149 + +0.2
3,796,150 - -0.4
3,796,150 - -0.6
3,796,161 + +0.8
3,796,162 - -1.3
3,796,162 - -0.4
3,796,162 - -0.4
3,796,169 + -0.8
3,796,169 + +0.2
3,796,170 - +0.3
3,796,186 + +0.9
3,796,186 + -1.6
3,796,186 + +0.7
3,796,186 + -1.7
3,796,186 + -0.3
3,796,186 + -0.2
3,796,186 + +0.4
3,796,187 - -0.1
3,796,187 - +1.5
3,796,187 - -0.3
3,796,187 - +0.3
3,796,187 - -1.9
3,796,187 - -0.3
3,796,187 - +0.0
3,796,187 - +0.2
3,796,187 - +0.8
3,796,260 - +1.5
3,796,260 - +0.7
3,796,260 - +0.2
3,796,467 - +0.3
3,796,602 + AO353_17165 0.84 -0.8
3,796,603 - AO353_17165 0.85 -2.8
3,796,603 - AO353_17165 0.85 -1.4
3,796,603 - AO353_17165 0.85 +1.3
3,796,603 - AO353_17165 0.85 -0.3
3,796,603 - AO353_17165 0.85 -0.4
3,796,608 + AO353_17165 0.89 -1.0
3,796,609 - -0.1
3,796,618 + +0.6
3,796,713 + -0.4
3,796,713 + -0.8
3,796,713 + +1.0
3,796,713 + -1.6
3,796,713 - -1.2
3,796,714 - +0.7
3,796,714 - -1.1
3,796,714 - -0.3
3,796,714 - +0.4
3,796,714 - -0.3
3,796,714 - -1.5
3,796,714 - +0.0
3,796,714 - -0.6
3,796,714 - -0.1
3,796,714 - +0.5
3,796,719 + -0.7
3,796,719 + +0.7
3,796,719 + +0.6
3,796,719 + -1.2
3,796,720 - -0.3
3,796,720 - +0.1
3,796,720 - +0.3
3,796,720 - -0.4
3,796,720 - -1.0
3,796,737 - -1.0
3,796,793 + -0.0
3,796,793 + +0.4
3,796,793 + -1.1
3,796,793 + -1.1
3,796,793 + -0.5
3,796,793 + -0.4
3,796,794 - +0.5
3,796,794 - +0.2
3,796,794 - +0.5
3,796,794 - -0.1
3,796,794 - -0.5
3,796,794 - -0.7
3,796,794 - -1.3
3,796,797 + -1.3
3,796,797 + +0.3
3,796,798 - +0.0
3,796,798 - -1.6
3,796,798 - -2.3
3,796,798 - -1.2
3,796,798 - -0.4
3,796,971 - +0.9
3,797,131 + -0.4
3,797,131 + -0.3
3,797,148 + -0.6
3,797,149 - -1.4
3,797,149 - -0.3
3,797,149 - -1.2
3,797,252 - -0.6
3,797,299 - +0.6
3,797,299 - -1.7
3,797,299 - +0.7
3,797,299 - -0.2

Or see this region's nucleotide sequence