Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06630

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06625 and AO353_06630 are separated by 62 nucleotidesAO353_06630 and AO353_06635 overlap by 16 nucleotides AO353_06625: AO353_06625 - hypothetical protein, at 1,474,027 to 1,478,532 _06625 AO353_06630: AO353_06630 - hypothetical protein, at 1,478,595 to 1,479,245 _06630 AO353_06635: AO353_06635 - hypothetical protein, at 1,479,230 to 1,480,954 _06635 Position (kb) 1478 1479 1480Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1477.607 kb on + strand, within AO353_06625at 1477.607 kb on + strand, within AO353_06625at 1477.607 kb on + strand, within AO353_06625at 1477.607 kb on + strand, within AO353_06625at 1477.607 kb on + strand, within AO353_06625at 1477.607 kb on + strand, within AO353_06625at 1477.607 kb on + strand, within AO353_06625at 1477.608 kb on - strand, within AO353_06625at 1477.608 kb on - strand, within AO353_06625at 1477.608 kb on - strand, within AO353_06625at 1477.608 kb on - strand, within AO353_06625at 1477.608 kb on - strand, within AO353_06625at 1477.608 kb on - strand, within AO353_06625at 1477.622 kb on + strand, within AO353_06625at 1477.622 kb on + strand, within AO353_06625at 1477.622 kb on + strand, within AO353_06625at 1477.622 kb on + strand, within AO353_06625at 1477.622 kb on + strand, within AO353_06625at 1477.623 kb on - strand, within AO353_06625at 1477.623 kb on - strand, within AO353_06625at 1477.625 kb on + strand, within AO353_06625at 1477.625 kb on + strand, within AO353_06625at 1477.625 kb on + strand, within AO353_06625at 1477.625 kb on + strand, within AO353_06625at 1477.625 kb on + strand, within AO353_06625at 1477.626 kb on - strand, within AO353_06625at 1477.626 kb on - strand, within AO353_06625at 1477.626 kb on - strand, within AO353_06625at 1477.626 kb on - strand, within AO353_06625at 1477.626 kb on - strand, within AO353_06625at 1477.626 kb on - strand, within AO353_06625at 1477.822 kb on + strand, within AO353_06625at 1477.822 kb on + strand, within AO353_06625at 1477.822 kb on + strand, within AO353_06625at 1477.822 kb on + strand, within AO353_06625at 1477.822 kb on + strand, within AO353_06625at 1477.822 kb on + strand, within AO353_06625at 1477.822 kb on + strand, within AO353_06625at 1477.822 kb on + strand, within AO353_06625at 1477.822 kb on + strand, within AO353_06625at 1477.823 kb on - strand, within AO353_06625at 1477.823 kb on - strand, within AO353_06625at 1477.823 kb on - strand, within AO353_06625at 1477.823 kb on - strand, within AO353_06625at 1477.823 kb on - strand, within AO353_06625at 1477.823 kb on - strand, within AO353_06625at 1477.823 kb on - strand, within AO353_06625at 1477.823 kb on - strand, within AO353_06625at 1477.823 kb on - strand, within AO353_06625at 1477.823 kb on - strand, within AO353_06625at 1477.823 kb on - strand, within AO353_06625at 1477.875 kb on + strand, within AO353_06625at 1477.875 kb on + strand, within AO353_06625at 1477.876 kb on - strand, within AO353_06625at 1477.889 kb on + strand, within AO353_06625at 1477.889 kb on + strand, within AO353_06625at 1477.890 kb on - strand, within AO353_06625at 1477.890 kb on - strand, within AO353_06625at 1477.916 kb on + strand, within AO353_06625at 1477.916 kb on + strand, within AO353_06625at 1477.916 kb on + strand, within AO353_06625at 1477.917 kb on - strand, within AO353_06625at 1477.917 kb on - strand, within AO353_06625at 1477.949 kb on + strand, within AO353_06625at 1477.949 kb on + strand, within AO353_06625at 1477.949 kb on + strand, within AO353_06625at 1477.949 kb on + strand, within AO353_06625at 1477.949 kb on + strand, within AO353_06625at 1477.949 kb on + strand, within AO353_06625at 1477.949 kb on + strand, within AO353_06625at 1477.949 kb on + strand, within AO353_06625at 1477.949 kb on + strand, within AO353_06625at 1477.949 kb on + strand, within AO353_06625at 1477.949 kb on + strand, within AO353_06625at 1477.950 kb on - strand, within AO353_06625at 1477.950 kb on - strand, within AO353_06625at 1477.950 kb on - strand, within AO353_06625at 1477.950 kb on - strand, within AO353_06625at 1477.950 kb on - strand, within AO353_06625at 1477.950 kb on - strand, within AO353_06625at 1477.950 kb on - strand, within AO353_06625at 1477.950 kb on - strand, within AO353_06625at 1477.950 kb on - strand, within AO353_06625at 1477.950 kb on - strand, within AO353_06625at 1478.106 kb on - strandat 1478.180 kb on + strandat 1478.180 kb on + strandat 1478.180 kb on + strandat 1478.180 kb on + strandat 1478.180 kb on + strandat 1478.226 kb on + strandat 1478.227 kb on - strandat 1478.237 kb on + strandat 1478.237 kb on + strandat 1478.237 kb on + strandat 1478.342 kb on + strandat 1478.377 kb on - strandat 1478.621 kb on - strandat 1478.743 kb on + strand, within AO353_06630at 1478.743 kb on + strand, within AO353_06630at 1478.744 kb on - strand, within AO353_06630at 1478.744 kb on - strand, within AO353_06630at 1478.752 kb on + strand, within AO353_06630at 1478.753 kb on - strand, within AO353_06630at 1478.753 kb on - strand, within AO353_06630at 1478.753 kb on - strand, within AO353_06630at 1478.753 kb on - strand, within AO353_06630at 1478.884 kb on + strand, within AO353_06630at 1478.884 kb on + strand, within AO353_06630at 1478.884 kb on + strand, within AO353_06630at 1478.884 kb on + strand, within AO353_06630at 1478.884 kb on + strand, within AO353_06630at 1478.884 kb on + strand, within AO353_06630at 1478.884 kb on + strand, within AO353_06630at 1478.884 kb on + strand, within AO353_06630at 1478.884 kb on + strand, within AO353_06630at 1478.884 kb on + strand, within AO353_06630at 1478.884 kb on + strand, within AO353_06630at 1478.885 kb on - strand, within AO353_06630at 1478.885 kb on - strand, within AO353_06630at 1478.969 kb on - strand, within AO353_06630at 1478.990 kb on + strand, within AO353_06630at 1478.990 kb on + strand, within AO353_06630at 1478.990 kb on + strand, within AO353_06630at 1478.990 kb on + strand, within AO353_06630at 1478.990 kb on + strand, within AO353_06630at 1478.990 kb on + strand, within AO353_06630at 1478.990 kb on + strand, within AO353_06630at 1478.990 kb on + strand, within AO353_06630at 1478.990 kb on + strand, within AO353_06630at 1478.990 kb on + strand, within AO353_06630at 1478.990 kb on + strand, within AO353_06630at 1478.990 kb on + strand, within AO353_06630at 1478.990 kb on + strand, within AO353_06630at 1478.990 kb on + strand, within AO353_06630at 1478.990 kb on + strand, within AO353_06630at 1478.991 kb on - strand, within AO353_06630at 1478.991 kb on - strand, within AO353_06630at 1478.991 kb on - strand, within AO353_06630at 1478.991 kb on - strand, within AO353_06630at 1478.991 kb on - strand, within AO353_06630at 1478.991 kb on - strand, within AO353_06630at 1478.991 kb on - strand, within AO353_06630at 1478.994 kb on + strand, within AO353_06630at 1478.994 kb on + strand, within AO353_06630at 1478.995 kb on - strand, within AO353_06630at 1479.042 kb on + strand, within AO353_06630at 1479.043 kb on - strand, within AO353_06630at 1479.043 kb on - strand, within AO353_06630at 1479.043 kb on - strand, within AO353_06630at 1479.043 kb on - strand, within AO353_06630at 1479.306 kb on + strandat 1479.306 kb on + strandat 1479.306 kb on + strandat 1479.306 kb on + strandat 1479.306 kb on + strandat 1479.307 kb on - strandat 1479.307 kb on - strandat 1479.307 kb on - strandat 1479.348 kb on + strandat 1479.348 kb on + strandat 1479.348 kb on + strandat 1479.349 kb on - strandat 1479.349 kb on - strandat 1479.349 kb on - strandat 1479.349 kb on - strandat 1479.366 kb on + strandat 1479.366 kb on + strandat 1479.367 kb on - strandat 1479.447 kb on + strand, within AO353_06635at 1479.448 kb on - strand, within AO353_06635at 1479.448 kb on - strand, within AO353_06635at 1479.448 kb on - strand, within AO353_06635at 1479.448 kb on - strand, within AO353_06635at 1479.448 kb on - strand, within AO353_06635at 1479.448 kb on - strand, within AO353_06635at 1479.477 kb on - strand, within AO353_06635at 1479.738 kb on + strand, within AO353_06635at 1479.738 kb on + strand, within AO353_06635at 1479.738 kb on + strand, within AO353_06635at 1479.739 kb on - strand, within AO353_06635at 1479.831 kb on + strand, within AO353_06635at 1479.831 kb on + strand, within AO353_06635at 1479.831 kb on + strand, within AO353_06635at 1479.832 kb on - strand, within AO353_06635at 1479.832 kb on - strand, within AO353_06635at 1479.832 kb on - strand, within AO353_06635at 1479.832 kb on - strand, within AO353_06635at 1479.832 kb on - strand, within AO353_06635at 1479.832 kb on - strand, within AO353_06635at 1479.832 kb on - strand, within AO353_06635at 1480.130 kb on + strand, within AO353_06635at 1480.130 kb on + strand, within AO353_06635at 1480.131 kb on - strand, within AO353_06635at 1480.131 kb on - strand, within AO353_06635at 1480.133 kb on + strand, within AO353_06635at 1480.133 kb on + strand, within AO353_06635at 1480.134 kb on - strand, within AO353_06635at 1480.134 kb on - strand, within AO353_06635at 1480.134 kb on - strand, within AO353_06635at 1480.134 kb on - strand, within AO353_06635at 1480.134 kb on - strand, within AO353_06635at 1480.177 kb on + strand, within AO353_06635at 1480.177 kb on + strand, within AO353_06635at 1480.177 kb on + strand, within AO353_06635at 1480.177 kb on + strand, within AO353_06635at 1480.177 kb on + strand, within AO353_06635at 1480.177 kb on + strand, within AO353_06635at 1480.177 kb on + strand, within AO353_06635at 1480.178 kb on - strand, within AO353_06635at 1480.178 kb on - strand, within AO353_06635at 1480.178 kb on - strand, within AO353_06635at 1480.178 kb on - strand, within AO353_06635at 1480.178 kb on - strand, within AO353_06635at 1480.178 kb on - strand, within AO353_06635at 1480.178 kb on - strand, within AO353_06635

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,477,607 + AO353_06625 0.79 -0.3
1,477,607 + AO353_06625 0.79 -0.5
1,477,607 + AO353_06625 0.79 +2.0
1,477,607 + AO353_06625 0.79 -0.5
1,477,607 + AO353_06625 0.79 -0.6
1,477,607 + AO353_06625 0.79 -0.2
1,477,607 + AO353_06625 0.79 -0.0
1,477,608 - AO353_06625 0.79 +0.2
1,477,608 - AO353_06625 0.79 -0.4
1,477,608 - AO353_06625 0.79 -0.8
1,477,608 - AO353_06625 0.79 -0.3
1,477,608 - AO353_06625 0.79 -0.4
1,477,608 - AO353_06625 0.79 -2.3
1,477,622 + AO353_06625 0.80 -0.4
1,477,622 + AO353_06625 0.80 -0.1
1,477,622 + AO353_06625 0.80 +0.4
1,477,622 + AO353_06625 0.80 -2.3
1,477,622 + AO353_06625 0.80 +1.5
1,477,623 - AO353_06625 0.80 +0.2
1,477,623 - AO353_06625 0.80 +1.3
1,477,625 + AO353_06625 0.80 +0.4
1,477,625 + AO353_06625 0.80 +0.9
1,477,625 + AO353_06625 0.80 +0.8
1,477,625 + AO353_06625 0.80 -1.1
1,477,625 + AO353_06625 0.80 -0.1
1,477,626 - AO353_06625 0.80 -2.4
1,477,626 - AO353_06625 0.80 -0.4
1,477,626 - AO353_06625 0.80 +0.4
1,477,626 - AO353_06625 0.80 +0.2
1,477,626 - AO353_06625 0.80 -0.8
1,477,626 - AO353_06625 0.80 +0.6
1,477,822 + AO353_06625 0.84 +0.0
1,477,822 + AO353_06625 0.84 -0.6
1,477,822 + AO353_06625 0.84 +2.6
1,477,822 + AO353_06625 0.84 +1.2
1,477,822 + AO353_06625 0.84 +0.4
1,477,822 + AO353_06625 0.84 -1.2
1,477,822 + AO353_06625 0.84 +0.4
1,477,822 + AO353_06625 0.84 -0.5
1,477,822 + AO353_06625 0.84 -0.3
1,477,823 - AO353_06625 0.84 +0.6
1,477,823 - AO353_06625 0.84 -0.9
1,477,823 - AO353_06625 0.84 +1.2
1,477,823 - AO353_06625 0.84 -2.2
1,477,823 - AO353_06625 0.84 +0.7
1,477,823 - AO353_06625 0.84 -0.2
1,477,823 - AO353_06625 0.84 -0.1
1,477,823 - AO353_06625 0.84 +0.2
1,477,823 - AO353_06625 0.84 +1.0
1,477,823 - AO353_06625 0.84 +0.7
1,477,823 - AO353_06625 0.84 +0.2
1,477,875 + AO353_06625 0.85 +0.4
1,477,875 + AO353_06625 0.85 -0.5
1,477,876 - AO353_06625 0.85 +0.0
1,477,889 + AO353_06625 0.86 +0.6
1,477,889 + AO353_06625 0.86 -0.8
1,477,890 - AO353_06625 0.86 -1.0
1,477,890 - AO353_06625 0.86 -0.4
1,477,916 + AO353_06625 0.86 -0.1
1,477,916 + AO353_06625 0.86 +0.2
1,477,916 + AO353_06625 0.86 +0.7
1,477,917 - AO353_06625 0.86 -0.3
1,477,917 - AO353_06625 0.86 +1.3
1,477,949 + AO353_06625 0.87 -0.9
1,477,949 + AO353_06625 0.87 -0.6
1,477,949 + AO353_06625 0.87 -0.8
1,477,949 + AO353_06625 0.87 -0.2
1,477,949 + AO353_06625 0.87 -1.0
1,477,949 + AO353_06625 0.87 +0.0
1,477,949 + AO353_06625 0.87 +1.0
1,477,949 + AO353_06625 0.87 +0.2
1,477,949 + AO353_06625 0.87 +0.7
1,477,949 + AO353_06625 0.87 +0.5
1,477,949 + AO353_06625 0.87 -0.6
1,477,950 - AO353_06625 0.87 +0.0
1,477,950 - AO353_06625 0.87 +1.0
1,477,950 - AO353_06625 0.87 -0.6
1,477,950 - AO353_06625 0.87 -0.6
1,477,950 - AO353_06625 0.87 +1.5
1,477,950 - AO353_06625 0.87 -1.1
1,477,950 - AO353_06625 0.87 -1.6
1,477,950 - AO353_06625 0.87 -1.2
1,477,950 - AO353_06625 0.87 +0.8
1,477,950 - AO353_06625 0.87 -0.8
1,478,106 - +0.2
1,478,180 + +0.0
1,478,180 + +0.2
1,478,180 + -0.4
1,478,180 + -0.8
1,478,180 + +1.5
1,478,226 + +0.0
1,478,227 - +0.9
1,478,237 + +0.3
1,478,237 + +1.1
1,478,237 + +0.9
1,478,342 + +1.2
1,478,377 - +2.0
1,478,621 - +0.1
1,478,743 + AO353_06630 0.23 -0.6
1,478,743 + AO353_06630 0.23 -0.3
1,478,744 - AO353_06630 0.23 -2.4
1,478,744 - AO353_06630 0.23 -0.8
1,478,752 + AO353_06630 0.24 +1.3
1,478,753 - AO353_06630 0.24 +0.5
1,478,753 - AO353_06630 0.24 -2.8
1,478,753 - AO353_06630 0.24 -1.1
1,478,753 - AO353_06630 0.24 -0.3
1,478,884 + AO353_06630 0.44 +0.3
1,478,884 + AO353_06630 0.44 -1.0
1,478,884 + AO353_06630 0.44 +0.5
1,478,884 + AO353_06630 0.44 +1.1
1,478,884 + AO353_06630 0.44 -1.3
1,478,884 + AO353_06630 0.44 -1.6
1,478,884 + AO353_06630 0.44 -2.4
1,478,884 + AO353_06630 0.44 -1.8
1,478,884 + AO353_06630 0.44 -1.1
1,478,884 + AO353_06630 0.44 +1.0
1,478,884 + AO353_06630 0.44 -1.1
1,478,885 - AO353_06630 0.45 -0.4
1,478,885 - AO353_06630 0.45 +1.4
1,478,969 - AO353_06630 0.57 +1.3
1,478,990 + AO353_06630 0.61 +0.3
1,478,990 + AO353_06630 0.61 -0.8
1,478,990 + AO353_06630 0.61 -0.7
1,478,990 + AO353_06630 0.61 -1.9
1,478,990 + AO353_06630 0.61 +1.4
1,478,990 + AO353_06630 0.61 +0.2
1,478,990 + AO353_06630 0.61 -0.1
1,478,990 + AO353_06630 0.61 +0.6
1,478,990 + AO353_06630 0.61 -0.9
1,478,990 + AO353_06630 0.61 -0.9
1,478,990 + AO353_06630 0.61 +0.4
1,478,990 + AO353_06630 0.61 -1.2
1,478,990 + AO353_06630 0.61 -1.3
1,478,990 + AO353_06630 0.61 -1.8
1,478,990 + AO353_06630 0.61 +0.8
1,478,991 - AO353_06630 0.61 +0.1
1,478,991 - AO353_06630 0.61 +1.0
1,478,991 - AO353_06630 0.61 -2.1
1,478,991 - AO353_06630 0.61 -0.9
1,478,991 - AO353_06630 0.61 -0.4
1,478,991 - AO353_06630 0.61 +0.8
1,478,991 - AO353_06630 0.61 +0.3
1,478,994 + AO353_06630 0.61 +0.7
1,478,994 + AO353_06630 0.61 +0.6
1,478,995 - AO353_06630 0.61 -0.6
1,479,042 + AO353_06630 0.69 -1.4
1,479,043 - AO353_06630 0.69 +0.0
1,479,043 - AO353_06630 0.69 -1.7
1,479,043 - AO353_06630 0.69 -0.8
1,479,043 - AO353_06630 0.69 -0.5
1,479,306 + +0.3
1,479,306 + +0.8
1,479,306 + +0.2
1,479,306 + +0.4
1,479,306 + -2.6
1,479,307 - +0.0
1,479,307 - +0.0
1,479,307 - -0.9
1,479,348 + -1.0
1,479,348 + +0.6
1,479,348 + +0.3
1,479,349 - +1.5
1,479,349 - -1.1
1,479,349 - +1.2
1,479,349 - -1.8
1,479,366 + -1.0
1,479,366 + -0.2
1,479,367 - +0.1
1,479,447 + AO353_06635 0.13 -1.8
1,479,448 - AO353_06635 0.13 -0.6
1,479,448 - AO353_06635 0.13 +0.1
1,479,448 - AO353_06635 0.13 -0.3
1,479,448 - AO353_06635 0.13 -0.7
1,479,448 - AO353_06635 0.13 +0.1
1,479,448 - AO353_06635 0.13 -1.3
1,479,477 - AO353_06635 0.14 +1.9
1,479,738 + AO353_06635 0.29 +0.6
1,479,738 + AO353_06635 0.29 -1.0
1,479,738 + AO353_06635 0.29 -0.2
1,479,739 - AO353_06635 0.30 -0.1
1,479,831 + AO353_06635 0.35 -0.3
1,479,831 + AO353_06635 0.35 +2.0
1,479,831 + AO353_06635 0.35 +0.8
1,479,832 - AO353_06635 0.35 +0.3
1,479,832 - AO353_06635 0.35 -1.4
1,479,832 - AO353_06635 0.35 +0.8
1,479,832 - AO353_06635 0.35 -1.0
1,479,832 - AO353_06635 0.35 +0.6
1,479,832 - AO353_06635 0.35 -0.0
1,479,832 - AO353_06635 0.35 +1.7
1,480,130 + AO353_06635 0.52 +0.9
1,480,130 + AO353_06635 0.52 -1.3
1,480,131 - AO353_06635 0.52 +1.7
1,480,131 - AO353_06635 0.52 -0.3
1,480,133 + AO353_06635 0.52 +2.0
1,480,133 + AO353_06635 0.52 -2.0
1,480,134 - AO353_06635 0.52 +0.4
1,480,134 - AO353_06635 0.52 -1.6
1,480,134 - AO353_06635 0.52 -0.8
1,480,134 - AO353_06635 0.52 -1.0
1,480,134 - AO353_06635 0.52 +1.0
1,480,177 + AO353_06635 0.55 -0.5
1,480,177 + AO353_06635 0.55 -1.7
1,480,177 + AO353_06635 0.55 +0.1
1,480,177 + AO353_06635 0.55 +0.1
1,480,177 + AO353_06635 0.55 +1.3
1,480,177 + AO353_06635 0.55 -1.7
1,480,177 + AO353_06635 0.55 -0.8
1,480,178 - AO353_06635 0.55 -0.4
1,480,178 - AO353_06635 0.55 -0.9
1,480,178 - AO353_06635 0.55 -1.5
1,480,178 - AO353_06635 0.55 +0.2
1,480,178 - AO353_06635 0.55 -0.8
1,480,178 - AO353_06635 0.55 +1.0
1,480,178 - AO353_06635 0.55 -0.7

Or see this region's nucleotide sequence