Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02635

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02625 and AO353_02630 overlap by 4 nucleotidesAO353_02630 and AO353_02635 overlap by 4 nucleotidesAO353_02635 and AO353_02640 overlap by 4 nucleotides AO353_02625: AO353_02625 - cobalamin biosynthesis protein CobD, at 559,797 to 560,705 _02625 AO353_02630: AO353_02630 - 5,6-dimethylbenzimidazole synthase, at 560,702 to 561,352 _02630 AO353_02635: AO353_02635 - cobyrinic acid a,c-diamide synthase, at 561,349 to 562,686 _02635 AO353_02640: AO353_02640 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 562,683 to 563,294 _02640 Position (kb) 561 562 563Strain fitness (log2 ratio) -3 -2 -1 0 1at 560.452 kb on + strand, within AO353_02625at 560.452 kb on + strand, within AO353_02625at 560.452 kb on + strand, within AO353_02625at 560.452 kb on + strand, within AO353_02625at 560.452 kb on + strand, within AO353_02625at 560.453 kb on - strandat 560.453 kb on - strand, within AO353_02625at 560.453 kb on - strand, within AO353_02625at 560.453 kb on - strand, within AO353_02625at 560.453 kb on - strand, within AO353_02625at 560.453 kb on - strand, within AO353_02625at 560.481 kb on + strand, within AO353_02625at 560.481 kb on + strand, within AO353_02625at 560.482 kb on - strand, within AO353_02625at 560.482 kb on - strand, within AO353_02625at 560.485 kb on + strand, within AO353_02625at 560.485 kb on + strand, within AO353_02625at 560.485 kb on + strand, within AO353_02625at 560.485 kb on + strand, within AO353_02625at 560.486 kb on - strand, within AO353_02625at 560.529 kb on + strand, within AO353_02625at 560.530 kb on - strand, within AO353_02625at 560.530 kb on - strand, within AO353_02625at 560.538 kb on + strand, within AO353_02625at 560.539 kb on - strand, within AO353_02625at 560.550 kb on - strand, within AO353_02625at 560.730 kb on + strandat 560.731 kb on - strandat 560.744 kb on + strandat 560.745 kb on - strandat 560.745 kb on - strandat 560.745 kb on - strandat 560.777 kb on + strand, within AO353_02630at 560.777 kb on + strand, within AO353_02630at 560.778 kb on - strand, within AO353_02630at 560.778 kb on - strand, within AO353_02630at 560.793 kb on + strand, within AO353_02630at 560.998 kb on + strand, within AO353_02630at 560.998 kb on + strand, within AO353_02630at 560.999 kb on - strand, within AO353_02630at 560.999 kb on - strand, within AO353_02630at 561.309 kb on + strandat 561.309 kb on + strandat 561.309 kb on + strandat 561.379 kb on + strandat 561.379 kb on + strandat 561.449 kb on + strandat 561.449 kb on + strandat 561.449 kb on + strandat 561.449 kb on + strandat 561.449 kb on + strandat 561.449 kb on + strandat 561.449 kb on + strandat 561.449 kb on + strandat 561.450 kb on - strandat 561.450 kb on - strandat 561.450 kb on - strandat 561.450 kb on - strandat 561.450 kb on - strandat 561.450 kb on - strandat 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.560 kb on + strand, within AO353_02635at 561.561 kb on - strandat 561.561 kb on - strand, within AO353_02635at 561.561 kb on - strand, within AO353_02635at 561.561 kb on - strand, within AO353_02635at 561.561 kb on - strand, within AO353_02635at 561.561 kb on - strand, within AO353_02635at 561.561 kb on - strand, within AO353_02635at 561.561 kb on - strand, within AO353_02635at 561.590 kb on - strand, within AO353_02635at 561.707 kb on + strand, within AO353_02635at 561.707 kb on + strand, within AO353_02635at 561.707 kb on + strand, within AO353_02635at 561.707 kb on + strand, within AO353_02635at 561.708 kb on - strand, within AO353_02635at 561.708 kb on - strand, within AO353_02635at 561.708 kb on - strand, within AO353_02635at 561.833 kb on + strand, within AO353_02635at 561.833 kb on + strand, within AO353_02635at 561.833 kb on + strand, within AO353_02635at 561.834 kb on - strand, within AO353_02635at 561.834 kb on - strand, within AO353_02635at 561.834 kb on - strand, within AO353_02635at 561.834 kb on - strand, within AO353_02635at 561.929 kb on + strand, within AO353_02635at 561.929 kb on + strand, within AO353_02635at 561.929 kb on + strand, within AO353_02635at 561.929 kb on + strand, within AO353_02635at 561.929 kb on + strand, within AO353_02635at 561.930 kb on - strand, within AO353_02635at 561.930 kb on - strand, within AO353_02635at 562.172 kb on + strand, within AO353_02635at 562.499 kb on + strand, within AO353_02635at 562.499 kb on + strand, within AO353_02635at 562.804 kb on - strand, within AO353_02640at 562.864 kb on + strand, within AO353_02640at 563.336 kb on + strandat 563.336 kb on + strandat 563.337 kb on - strandat 563.337 kb on - strandat 563.342 kb on + strandat 563.342 kb on + strandat 563.481 kb on + strandat 563.489 kb on + strandat 563.489 kb on + strandat 563.489 kb on + strandat 563.489 kb on + strandat 563.489 kb on + strandat 563.490 kb on - strandat 563.490 kb on - strandat 563.612 kb on + strandat 563.612 kb on + strandat 563.613 kb on - strandat 563.638 kb on + strandat 563.638 kb on + strandat 563.638 kb on + strandat 563.638 kb on + strandat 563.639 kb on - strandat 563.639 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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560,452 + AO353_02625 0.72 -3.5
560,452 + AO353_02625 0.72 -1.7
560,452 + AO353_02625 0.72 -2.5
560,452 + AO353_02625 0.72 -1.0
560,452 + AO353_02625 0.72 -3.5
560,453 - +0.1
560,453 - AO353_02625 0.72 -0.2
560,453 - AO353_02625 0.72 -2.2
560,453 - AO353_02625 0.72 -2.3
560,453 - AO353_02625 0.72 -3.2
560,453 - AO353_02625 0.72 -1.6
560,481 + AO353_02625 0.75 -2.5
560,481 + AO353_02625 0.75 -1.0
560,482 - AO353_02625 0.75 -1.6
560,482 - AO353_02625 0.75 -1.5
560,485 + AO353_02625 0.76 -1.5
560,485 + AO353_02625 0.76 -1.7
560,485 + AO353_02625 0.76 -0.9
560,485 + AO353_02625 0.76 -1.5
560,486 - AO353_02625 0.76 +0.1
560,529 + AO353_02625 0.81 -2.4
560,530 - AO353_02625 0.81 -2.4
560,530 - AO353_02625 0.81 -0.4
560,538 + AO353_02625 0.82 -2.8
560,539 - AO353_02625 0.82 -2.3
560,550 - AO353_02625 0.83 -0.4
560,730 + -0.9
560,731 - -0.6
560,744 + -0.2
560,745 - -0.5
560,745 - -1.3
560,745 - -0.3
560,777 + AO353_02630 0.12 -1.4
560,777 + AO353_02630 0.12 -0.4
560,778 - AO353_02630 0.12 -2.5
560,778 - AO353_02630 0.12 +0.2
560,793 + AO353_02630 0.14 -0.3
560,998 + AO353_02630 0.45 -0.7
560,998 + AO353_02630 0.45 +0.9
560,999 - AO353_02630 0.46 -0.6
560,999 - AO353_02630 0.46 -1.3
561,309 + -0.7
561,309 + -1.9
561,309 + -0.5
561,379 + -0.9
561,379 + +0.1
561,449 + +1.3
561,449 + -1.4
561,449 + -2.5
561,449 + -2.0
561,449 + -2.5
561,449 + -0.5
561,449 + -0.9
561,449 + -2.0
561,450 - -2.5
561,450 - -3.7
561,450 - -1.0
561,450 - -1.3
561,450 - -2.0
561,450 - -2.0
561,560 + AO353_02635 0.16 -3.3
561,560 + AO353_02635 0.16 -1.2
561,560 + AO353_02635 0.16 -1.4
561,560 + AO353_02635 0.16 -0.1
561,560 + AO353_02635 0.16 -2.7
561,560 + AO353_02635 0.16 -1.6
561,560 + AO353_02635 0.16 -3.7
561,560 + AO353_02635 0.16 -1.7
561,560 + AO353_02635 0.16 -1.7
561,560 + AO353_02635 0.16 -0.5
561,560 + AO353_02635 0.16 -2.3
561,560 + AO353_02635 0.16 -1.9
561,560 + AO353_02635 0.16 -1.1
561,560 + AO353_02635 0.16 -1.7
561,560 + AO353_02635 0.16 -0.6
561,560 + AO353_02635 0.16 +0.1
561,560 + AO353_02635 0.16 -0.9
561,561 - -1.1
561,561 - AO353_02635 0.16 -1.6
561,561 - AO353_02635 0.16 -2.3
561,561 - AO353_02635 0.16 -3.0
561,561 - AO353_02635 0.16 -0.5
561,561 - AO353_02635 0.16 -2.0
561,561 - AO353_02635 0.16 -0.2
561,561 - AO353_02635 0.16 -0.9
561,590 - AO353_02635 0.18 +0.3
561,707 + AO353_02635 0.27 -0.3
561,707 + AO353_02635 0.27 -0.6
561,707 + AO353_02635 0.27 -0.7
561,707 + AO353_02635 0.27 -0.1
561,708 - AO353_02635 0.27 -2.5
561,708 - AO353_02635 0.27 +1.2
561,708 - AO353_02635 0.27 -2.2
561,833 + AO353_02635 0.36 -1.5
561,833 + AO353_02635 0.36 -1.3
561,833 + AO353_02635 0.36 -1.1
561,834 - AO353_02635 0.36 -2.4
561,834 - AO353_02635 0.36 -0.9
561,834 - AO353_02635 0.36 -1.0
561,834 - AO353_02635 0.36 -1.0
561,929 + AO353_02635 0.43 +0.7
561,929 + AO353_02635 0.43 -1.0
561,929 + AO353_02635 0.43 -0.3
561,929 + AO353_02635 0.43 -0.6
561,929 + AO353_02635 0.43 -2.4
561,930 - AO353_02635 0.43 -2.4
561,930 - AO353_02635 0.43 -2.2
562,172 + AO353_02635 0.62 -0.9
562,499 + AO353_02635 0.86 -1.4
562,499 + AO353_02635 0.86 -0.0
562,804 - AO353_02640 0.20 -1.2
562,864 + AO353_02640 0.30 -1.4
563,336 + -2.5
563,336 + -1.4
563,337 - +0.4
563,337 - -0.3
563,342 + -1.7
563,342 + -2.3
563,481 + +0.1
563,489 + -0.4
563,489 + +0.1
563,489 + -1.7
563,489 + -1.2
563,489 + -0.9
563,490 - +0.1
563,490 - -1.6
563,612 + -0.9
563,612 + -1.7
563,613 - -0.7
563,638 + +1.3
563,638 + +0.2
563,638 + +1.6
563,638 + -1.1
563,639 - -0.2
563,639 - +0.5

Or see this region's nucleotide sequence