Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02605

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02595 and AO353_02600 are separated by 2 nucleotidesAO353_02600 and AO353_02605 overlap by 4 nucleotidesAO353_02605 and AO353_02610 overlap by 4 nucleotidesAO353_02610 and AO353_02615 are separated by 12 nucleotides AO353_02595: AO353_02595 - cobalamin synthase, at 554,472 to 555,203 _02595 AO353_02600: AO353_02600 - alpha-ribazole phosphatase, at 555,206 to 555,781 _02600 AO353_02605: AO353_02605 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 555,778 to 556,833 _02605 AO353_02610: AO353_02610 - adenosylcobinamide kinase, at 556,830 to 557,351 _02610 AO353_02615: AO353_02615 - cobyric acid synthase, at 557,364 to 558,815 _02615 Position (kb) 555 556 557Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 554.804 kb on + strand, within AO353_02595at 554.805 kb on - strand, within AO353_02595at 554.805 kb on - strand, within AO353_02595at 554.805 kb on - strand, within AO353_02595at 555.103 kb on + strand, within AO353_02595at 555.103 kb on + strand, within AO353_02595at 555.373 kb on - strand, within AO353_02600at 555.373 kb on - strand, within AO353_02600at 555.373 kb on - strand, within AO353_02600at 555.373 kb on - strand, within AO353_02600at 555.373 kb on - strand, within AO353_02600at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.938 kb on - strand, within AO353_02605at 555.938 kb on - strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.085 kb on + strand, within AO353_02605at 556.086 kb on - strand, within AO353_02605at 556.198 kb on - strand, within AO353_02605at 556.296 kb on + strand, within AO353_02605at 556.296 kb on + strand, within AO353_02605at 556.296 kb on + strand, within AO353_02605at 556.296 kb on + strand, within AO353_02605at 556.323 kb on + strand, within AO353_02605at 556.378 kb on + strand, within AO353_02605at 556.379 kb on - strand, within AO353_02605at 556.379 kb on - strand, within AO353_02605at 556.833 kb on + strandat 556.833 kb on + strandat 556.833 kb on + strandat 556.834 kb on - strandat 556.841 kb on + strandat 556.841 kb on + strandat 556.841 kb on + strandat 556.841 kb on + strandat 556.842 kb on - strandat 556.842 kb on - strandat 556.842 kb on - strandat 556.936 kb on + strand, within AO353_02610at 556.937 kb on - strand, within AO353_02610at 556.937 kb on - strand, within AO353_02610at 556.937 kb on - strand, within AO353_02610at 556.937 kb on - strand, within AO353_02610at 557.115 kb on + strand, within AO353_02610at 557.116 kb on - strand, within AO353_02610at 557.116 kb on - strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.316 kb on - strandat 557.389 kb on + strandat 557.389 kb on + strandat 557.389 kb on + strandat 557.472 kb on + strandat 557.472 kb on + strandat 557.473 kb on - strandat 557.473 kb on - strandat 557.543 kb on - strand, within AO353_02615at 557.543 kb on - strand, within AO353_02615at 557.543 kb on - strand, within AO353_02615at 557.657 kb on - strand, within AO353_02615at 557.759 kb on + strand, within AO353_02615at 557.759 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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554,804 + AO353_02595 0.45 -0.6
554,805 - AO353_02595 0.45 -1.7
554,805 - AO353_02595 0.45 -0.1
554,805 - AO353_02595 0.45 -2.9
555,103 + AO353_02595 0.86 -0.6
555,103 + AO353_02595 0.86 -2.1
555,373 - AO353_02600 0.29 +0.1
555,373 - AO353_02600 0.29 +0.3
555,373 - AO353_02600 0.29 -2.5
555,373 - AO353_02600 0.29 -1.7
555,373 - AO353_02600 0.29 -1.3
555,937 + AO353_02605 0.15 -1.7
555,937 + AO353_02605 0.15 -1.3
555,937 + AO353_02605 0.15 -1.9
555,937 + AO353_02605 0.15 -1.3
555,937 + AO353_02605 0.15 -3.5
555,937 + AO353_02605 0.15 -2.1
555,937 + AO353_02605 0.15 -2.6
555,938 - AO353_02605 0.15 -0.1
555,938 - AO353_02605 0.15 -0.3
556,038 + AO353_02605 0.25 -1.6
556,038 + AO353_02605 0.25 -0.2
556,038 + AO353_02605 0.25 -0.9
556,038 + AO353_02605 0.25 -0.2
556,038 + AO353_02605 0.25 -1.7
556,038 + AO353_02605 0.25 -2.5
556,039 - AO353_02605 0.25 -2.6
556,039 - AO353_02605 0.25 -2.1
556,039 - AO353_02605 0.25 -0.3
556,039 - AO353_02605 0.25 -1.5
556,039 - AO353_02605 0.25 -3.0
556,039 - AO353_02605 0.25 -1.9
556,039 - AO353_02605 0.25 -1.9
556,039 - AO353_02605 0.25 -1.9
556,039 - AO353_02605 0.25 -0.6
556,085 + AO353_02605 0.29 -1.5
556,086 - AO353_02605 0.29 -1.7
556,198 - AO353_02605 0.40 -2.1
556,296 + AO353_02605 0.49 +0.5
556,296 + AO353_02605 0.49 +1.1
556,296 + AO353_02605 0.49 +0.4
556,296 + AO353_02605 0.49 -1.3
556,323 + AO353_02605 0.52 -3.1
556,378 + AO353_02605 0.57 -1.5
556,379 - AO353_02605 0.57 -2.7
556,379 - AO353_02605 0.57 -0.6
556,833 + +1.7
556,833 + -2.5
556,833 + -0.7
556,834 - -0.7
556,841 + -0.6
556,841 + -1.3
556,841 + -3.3
556,841 + -0.7
556,842 - -1.9
556,842 - -1.0
556,842 - -0.2
556,936 + AO353_02610 0.20 -2.5
556,937 - AO353_02610 0.20 +0.9
556,937 - AO353_02610 0.20 -0.5
556,937 - AO353_02610 0.20 +0.7
556,937 - AO353_02610 0.20 -2.4
557,115 + AO353_02610 0.55 -1.2
557,116 - AO353_02610 0.55 -1.4
557,116 - AO353_02610 0.55 -0.6
557,263 + AO353_02610 0.83 -3.0
557,263 + AO353_02610 0.83 -1.0
557,263 + AO353_02610 0.83 -0.6
557,263 + AO353_02610 0.83 -2.2
557,263 + AO353_02610 0.83 +1.7
557,263 + AO353_02610 0.83 -0.7
557,263 + AO353_02610 0.83 +0.2
557,263 + AO353_02610 0.83 +0.9
557,263 + AO353_02610 0.83 -0.3
557,263 + AO353_02610 0.83 -3.3
557,263 + AO353_02610 0.83 -1.1
557,263 + AO353_02610 0.83 -3.8
557,263 + AO353_02610 0.83 -1.7
557,264 - AO353_02610 0.83 -1.2
557,264 - AO353_02610 0.83 -2.5
557,264 - AO353_02610 0.83 -1.3
557,264 - AO353_02610 0.83 -1.6
557,264 - AO353_02610 0.83 -1.0
557,264 - AO353_02610 0.83 -1.1
557,264 - AO353_02610 0.83 +0.1
557,264 - AO353_02610 0.83 -1.6
557,316 - +0.7
557,389 + -1.3
557,389 + -2.7
557,389 + -0.9
557,472 + -0.6
557,472 + -1.6
557,473 - -1.1
557,473 - +0.1
557,543 - AO353_02615 0.12 -1.7
557,543 - AO353_02615 0.12 -2.3
557,543 - AO353_02615 0.12 -2.5
557,657 - AO353_02615 0.20 -1.7
557,759 + AO353_02615 0.27 +0.1
557,759 + AO353_02615 0.27 -3.1
557,832 + AO353_02615 0.32 -1.6
557,832 + AO353_02615 0.32 -2.1
557,832 + AO353_02615 0.32 +1.7
557,832 + AO353_02615 0.32 -2.0
557,832 + AO353_02615 0.32 -0.9
557,832 + AO353_02615 0.32 -1.0
557,832 + AO353_02615 0.32 -0.9
557,833 - AO353_02615 0.32 -1.0
557,833 - AO353_02615 0.32 -0.9
557,833 - AO353_02615 0.32 -2.1
557,833 - AO353_02615 0.32 -0.6
557,833 - AO353_02615 0.32 +0.4
557,833 - AO353_02615 0.32 -2.7
557,833 - AO353_02615 0.32 -3.1
557,833 - AO353_02615 0.32 -4.3
557,833 - AO353_02615 0.32 -0.5

Or see this region's nucleotide sequence