Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00485

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00475 and AO353_00480 are separated by 170 nucleotidesAO353_00480 and AO353_00485 are separated by 3 nucleotidesAO353_00485 and AO353_00490 are separated by 48 nucleotidesAO353_00490 and AO353_00495 are separated by 143 nucleotides AO353_00475: AO353_00475 - hypothetical protein, at 96,110 to 96,343 _00475 AO353_00480: AO353_00480 - hypothetical protein, at 96,514 to 97,071 _00480 AO353_00485: AO353_00485 - hypothetical protein, at 97,075 to 98,109 _00485 AO353_00490: AO353_00490 - PasA protein, at 98,158 to 98,682 _00490 AO353_00495: AO353_00495 - DNA topoisomerase I, at 98,826 to 101,447 _00495 Position (kb) 97 98 99Strain fitness (log2 ratio) -2 -1 0 1 2at 96.326 kb on + strandat 96.327 kb on - strandat 96.327 kb on - strandat 96.343 kb on + strandat 96.343 kb on + strandat 96.343 kb on + strandat 96.344 kb on - strandat 96.344 kb on - strandat 96.374 kb on + strandat 96.374 kb on + strandat 96.374 kb on + strandat 96.374 kb on + strandat 96.374 kb on + strandat 96.374 kb on + strandat 96.374 kb on + strandat 96.374 kb on + strandat 96.374 kb on + strandat 96.374 kb on + strandat 96.375 kb on - strandat 96.375 kb on - strandat 96.375 kb on - strandat 96.375 kb on - strandat 96.375 kb on - strandat 96.375 kb on - strandat 96.375 kb on - strandat 96.375 kb on - strandat 96.375 kb on - strandat 96.375 kb on - strandat 96.375 kb on - strandat 96.375 kb on - strandat 96.375 kb on - strandat 96.375 kb on - strandat 96.375 kb on - strandat 96.376 kb on + strandat 96.376 kb on + strandat 96.376 kb on + strandat 96.376 kb on + strandat 96.376 kb on + strandat 96.376 kb on + strandat 96.376 kb on + strandat 96.376 kb on + strandat 96.376 kb on + strandat 96.376 kb on + strandat 96.376 kb on + strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.377 kb on - strandat 96.378 kb on + strandat 96.378 kb on + strandat 96.378 kb on + strandat 96.378 kb on + strandat 96.378 kb on + strandat 96.378 kb on + strandat 96.379 kb on - strandat 96.379 kb on - strandat 96.433 kb on + strandat 96.477 kb on + strandat 96.531 kb on - strandat 96.531 kb on - strandat 96.601 kb on - strand, within AO353_00480at 96.601 kb on - strand, within AO353_00480at 96.612 kb on + strand, within AO353_00480at 96.613 kb on - strand, within AO353_00480at 96.658 kb on - strand, within AO353_00480at 96.811 kb on + strand, within AO353_00480at 96.812 kb on - strand, within AO353_00480at 96.893 kb on + strand, within AO353_00480at 96.893 kb on + strand, within AO353_00480at 96.893 kb on + strand, within AO353_00480at 96.894 kb on - strandat 96.894 kb on - strand, within AO353_00480at 96.894 kb on - strand, within AO353_00480at 96.894 kb on - strand, within AO353_00480at 96.957 kb on - strand, within AO353_00480at 96.957 kb on - strand, within AO353_00480at 97.005 kb on + strand, within AO353_00480at 97.006 kb on - strand, within AO353_00480at 97.016 kb on + strandat 97.017 kb on - strandat 97.017 kb on - strandat 97.076 kb on + strandat 97.079 kb on + strandat 97.079 kb on + strandat 97.079 kb on + strandat 97.079 kb on + strandat 97.079 kb on + strandat 97.080 kb on - strandat 97.080 kb on - strandat 97.207 kb on - strand, within AO353_00485at 97.252 kb on + strand, within AO353_00485at 97.252 kb on + strand, within AO353_00485at 97.253 kb on - strand, within AO353_00485at 97.392 kb on + strand, within AO353_00485at 97.393 kb on - strand, within AO353_00485at 97.434 kb on + strand, within AO353_00485at 97.435 kb on - strand, within AO353_00485at 97.522 kb on - strand, within AO353_00485at 97.539 kb on + strand, within AO353_00485at 97.540 kb on - strand, within AO353_00485at 97.540 kb on - strand, within AO353_00485at 97.546 kb on + strandat 97.547 kb on - strand, within AO353_00485at 97.612 kb on + strand, within AO353_00485at 97.612 kb on + strand, within AO353_00485at 97.613 kb on - strand, within AO353_00485at 97.613 kb on - strand, within AO353_00485at 97.613 kb on - strand, within AO353_00485at 97.613 kb on - strand, within AO353_00485at 97.616 kb on + strand, within AO353_00485at 97.617 kb on - strand, within AO353_00485at 97.617 kb on - strand, within AO353_00485at 97.632 kb on - strand, within AO353_00485at 97.632 kb on - strand, within AO353_00485at 97.744 kb on + strand, within AO353_00485at 97.744 kb on + strand, within AO353_00485at 97.745 kb on - strand, within AO353_00485at 97.745 kb on - strand, within AO353_00485at 97.784 kb on + strand, within AO353_00485at 97.785 kb on - strand, within AO353_00485at 97.785 kb on - strand, within AO353_00485at 97.785 kb on - strand, within AO353_00485at 97.894 kb on + strand, within AO353_00485at 97.895 kb on - strand, within AO353_00485at 97.903 kb on + strand, within AO353_00485at 97.904 kb on - strand, within AO353_00485at 97.968 kb on + strand, within AO353_00485at 97.971 kb on + strand, within AO353_00485at 97.971 kb on + strand, within AO353_00485at 97.972 kb on - strand, within AO353_00485at 97.978 kb on + strand, within AO353_00485at 97.979 kb on - strand, within AO353_00485at 97.979 kb on - strand, within AO353_00485at 98.010 kb on + strandat 98.151 kb on + strandat 98.151 kb on + strandat 98.152 kb on - strandat 98.155 kb on + strandat 98.155 kb on + strandat 98.155 kb on + strandat 98.155 kb on + strandat 98.155 kb on + strandat 98.155 kb on + strandat 98.155 kb on + strandat 98.155 kb on + strandat 98.155 kb on + strandat 98.155 kb on + strandat 98.155 kb on + strandat 98.155 kb on + strandat 98.155 kb on + strandat 98.156 kb on - strandat 98.156 kb on - strandat 98.156 kb on - strandat 98.156 kb on - strandat 98.156 kb on - strandat 98.156 kb on - strandat 98.156 kb on - strandat 98.156 kb on - strandat 98.156 kb on - strandat 98.156 kb on - strandat 98.156 kb on - strandat 98.159 kb on + strandat 98.159 kb on + strandat 98.159 kb on + strandat 98.159 kb on + strandat 98.159 kb on + strandat 98.159 kb on + strandat 98.160 kb on - strandat 98.160 kb on - strandat 98.160 kb on - strandat 98.160 kb on - strandat 98.271 kb on + strand, within AO353_00490at 98.492 kb on + strand, within AO353_00490at 98.534 kb on + strand, within AO353_00490at 98.535 kb on - strand, within AO353_00490at 98.535 kb on - strand, within AO353_00490at 98.642 kb on + strandat 98.664 kb on + strandat 98.664 kb on + strandat 98.666 kb on + strandat 98.666 kb on + strandat 98.666 kb on + strandat 98.666 kb on + strandat 98.667 kb on - strandat 98.667 kb on - strandat 98.667 kb on - strandat 98.667 kb on - strandat 98.667 kb on - strandat 98.667 kb on - strandat 98.667 kb on - strandat 98.705 kb on + strandat 98.705 kb on + strandat 98.705 kb on + strandat 98.706 kb on - strandat 98.706 kb on - strandat 98.714 kb on + strandat 98.714 kb on + strandat 98.828 kb on - strandat 98.828 kb on - strandat 98.920 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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96,326 + +0.1
96,327 - -0.9
96,327 - +1.5
96,343 + +0.2
96,343 + +1.5
96,343 + -0.8
96,344 - +0.1
96,344 - -0.3
96,374 + -0.8
96,374 + +0.7
96,374 + +1.2
96,374 + -0.0
96,374 + -0.0
96,374 + +1.9
96,374 + -0.2
96,374 + -2.0
96,374 + +0.2
96,374 + +2.0
96,375 - +0.5
96,375 - +1.2
96,375 - +0.1
96,375 - -1.9
96,375 - -1.6
96,375 - -1.2
96,375 - -1.5
96,375 - -0.8
96,375 - +0.5
96,375 - +1.7
96,375 - +0.5
96,375 - -0.2
96,375 - -0.5
96,375 - +0.9
96,375 - +2.5
96,376 + -0.5
96,376 + +1.5
96,376 + -0.3
96,376 + +0.2
96,376 + -0.5
96,376 + +0.3
96,376 + -1.3
96,376 + -0.8
96,376 + -0.5
96,376 + -0.7
96,376 + -1.5
96,377 - +0.5
96,377 - -0.2
96,377 - -0.3
96,377 - +0.8
96,377 - +0.2
96,377 - -0.7
96,377 - -0.3
96,377 - +1.5
96,377 - -0.0
96,377 - +0.3
96,377 - +0.5
96,377 - +0.5
96,377 - +0.7
96,377 - +0.5
96,377 - -0.6
96,377 - -0.8
96,377 - +0.2
96,377 - -0.2
96,377 - +0.5
96,377 - -1.1
96,377 - +1.5
96,377 - +1.5
96,377 - +0.5
96,377 - +0.4
96,377 - -0.2
96,378 + +1.5
96,378 + +0.1
96,378 + +1.1
96,378 + -0.5
96,378 + -0.7
96,378 + +0.5
96,379 - -1.5
96,379 - -0.5
96,433 + -1.0
96,477 + +0.5
96,531 - -0.1
96,531 - +0.1
96,601 - AO353_00480 0.16 +0.6
96,601 - AO353_00480 0.16 +0.5
96,612 + AO353_00480 0.18 -1.3
96,613 - AO353_00480 0.18 -0.6
96,658 - AO353_00480 0.26 +0.7
96,811 + AO353_00480 0.53 -0.8
96,812 - AO353_00480 0.53 -0.1
96,893 + AO353_00480 0.68 -2.3
96,893 + AO353_00480 0.68 +2.5
96,893 + AO353_00480 0.68 -0.1
96,894 - +2.3
96,894 - AO353_00480 0.68 +2.1
96,894 - AO353_00480 0.68 +0.3
96,894 - AO353_00480 0.68 +2.4
96,957 - AO353_00480 0.79 -0.9
96,957 - AO353_00480 0.79 +0.2
97,005 + AO353_00480 0.88 -0.7
97,006 - AO353_00480 0.88 -1.4
97,016 + +0.5
97,017 - +0.2
97,017 - +0.5
97,076 + -0.0
97,079 + +0.4
97,079 + +0.5
97,079 + +0.5
97,079 + +0.4
97,079 + +1.8
97,080 - +0.8
97,080 - -1.5
97,207 - AO353_00485 0.13 -0.7
97,252 + AO353_00485 0.17 +0.9
97,252 + AO353_00485 0.17 -0.8
97,253 - AO353_00485 0.17 +0.2
97,392 + AO353_00485 0.31 -0.2
97,393 - AO353_00485 0.31 +0.5
97,434 + AO353_00485 0.35 -1.1
97,435 - AO353_00485 0.35 -0.6
97,522 - AO353_00485 0.43 +1.7
97,539 + AO353_00485 0.45 +0.1
97,540 - AO353_00485 0.45 +0.2
97,540 - AO353_00485 0.45 -0.8
97,546 + -0.0
97,547 - AO353_00485 0.46 -0.4
97,612 + AO353_00485 0.52 +0.5
97,612 + AO353_00485 0.52 -0.7
97,613 - AO353_00485 0.52 -0.2
97,613 - AO353_00485 0.52 +0.5
97,613 - AO353_00485 0.52 -0.2
97,613 - AO353_00485 0.52 -0.6
97,616 + AO353_00485 0.52 -2.5
97,617 - AO353_00485 0.52 +0.5
97,617 - AO353_00485 0.52 -0.7
97,632 - AO353_00485 0.54 -0.8
97,632 - AO353_00485 0.54 -1.3
97,744 + AO353_00485 0.65 -0.0
97,744 + AO353_00485 0.65 +1.0
97,745 - AO353_00485 0.65 +0.8
97,745 - AO353_00485 0.65 -0.9
97,784 + AO353_00485 0.69 +0.8
97,785 - AO353_00485 0.69 -1.6
97,785 - AO353_00485 0.69 -0.7
97,785 - AO353_00485 0.69 -0.4
97,894 + AO353_00485 0.79 -0.4
97,895 - AO353_00485 0.79 -1.3
97,903 + AO353_00485 0.80 +0.2
97,904 - AO353_00485 0.80 +0.3
97,968 + AO353_00485 0.86 +0.5
97,971 + AO353_00485 0.87 -2.4
97,971 + AO353_00485 0.87 -0.8
97,972 - AO353_00485 0.87 +0.4
97,978 + AO353_00485 0.87 -0.4
97,979 - AO353_00485 0.87 +0.7
97,979 - AO353_00485 0.87 +0.5
98,010 + +1.1
98,151 + +0.8
98,151 + +0.9
98,152 - -1.5
98,155 + +0.5
98,155 + -1.0
98,155 + +0.4
98,155 + +0.3
98,155 + -0.3
98,155 + +1.8
98,155 + -1.2
98,155 + -2.0
98,155 + -2.4
98,155 + -1.3
98,155 + +0.5
98,155 + +0.3
98,155 + -0.3
98,156 - -1.3
98,156 - +0.2
98,156 - -0.1
98,156 - -0.7
98,156 - +0.5
98,156 - -0.7
98,156 - -0.7
98,156 - -0.5
98,156 - -1.3
98,156 - -0.0
98,156 - +0.8
98,159 + +0.9
98,159 + -0.0
98,159 + -0.1
98,159 + -0.8
98,159 + +1.0
98,159 + +1.0
98,160 - -1.3
98,160 - +0.7
98,160 - +1.8
98,160 - -0.3
98,271 + AO353_00490 0.22 -2.0
98,492 + AO353_00490 0.64 -1.3
98,534 + AO353_00490 0.72 -1.0
98,535 - AO353_00490 0.72 +0.3
98,535 - AO353_00490 0.72 +0.8
98,642 + +0.7
98,664 + -0.1
98,664 + +0.5
98,666 + +2.1
98,666 + +1.5
98,666 + +1.0
98,666 + +0.8
98,667 - +0.4
98,667 - -1.8
98,667 - -0.5
98,667 - +0.0
98,667 - -0.2
98,667 - -0.0
98,667 - -0.0
98,705 + -1.0
98,705 + +2.5
98,705 + -1.1
98,706 - +0.7
98,706 - +0.1
98,714 + +0.5
98,714 + +1.0
98,828 - -0.8
98,828 - -1.0
98,920 + -0.9

Or see this region's nucleotide sequence