Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_835

Experiment: Hydroxide 0.05 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_834 and Pf6N2E2_835 are separated by 56 nucleotidesPf6N2E2_835 and Pf6N2E2_836 are separated by 231 nucleotides Pf6N2E2_834 - Cation efflux system protein, at 973,000 to 976,080 _834 Pf6N2E2_835 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 976,137 to 977,429 _835 Pf6N2E2_836 - ABC-type protease/lipase transport system, ATPase and permease components, at 977,661 to 979,376 _836 Position (kb) 976 977 978Strain fitness (log2 ratio) -2 -1 0 1 2at 975.312 kb on + strand, within Pf6N2E2_834at 975.312 kb on + strand, within Pf6N2E2_834at 975.313 kb on - strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.409 kb on - strand, within Pf6N2E2_834at 975.464 kb on + strand, within Pf6N2E2_834at 975.465 kb on - strand, within Pf6N2E2_834at 975.465 kb on - strand, within Pf6N2E2_834at 975.710 kb on + strand, within Pf6N2E2_834at 975.711 kb on - strand, within Pf6N2E2_834at 975.860 kb on + strandat 975.861 kb on - strandat 975.861 kb on - strandat 976.015 kb on + strandat 976.015 kb on + strandat 976.015 kb on + strandat 976.015 kb on + strandat 976.016 kb on - strandat 976.067 kb on + strandat 976.068 kb on - strandat 976.077 kb on - strandat 976.079 kb on - strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.137 kb on - strandat 976.137 kb on - strandat 976.210 kb on + strandat 976.219 kb on + strandat 976.219 kb on + strandat 976.220 kb on - strandat 976.256 kb on + strandat 976.256 kb on + strandat 976.256 kb on + strandat 976.256 kb on + strandat 976.733 kb on + strand, within Pf6N2E2_835at 976.733 kb on + strand, within Pf6N2E2_835at 976.733 kb on + strand, within Pf6N2E2_835at 976.733 kb on + strand, within Pf6N2E2_835at 976.733 kb on + strand, within Pf6N2E2_835at 976.734 kb on - strand, within Pf6N2E2_835at 976.734 kb on - strand, within Pf6N2E2_835at 977.078 kb on + strand, within Pf6N2E2_835at 977.079 kb on - strand, within Pf6N2E2_835at 977.171 kb on + strand, within Pf6N2E2_835at 977.171 kb on + strand, within Pf6N2E2_835at 977.171 kb on + strand, within Pf6N2E2_835at 977.172 kb on - strand, within Pf6N2E2_835at 977.181 kb on - strand, within Pf6N2E2_835at 977.477 kb on + strandat 977.542 kb on + strandat 977.542 kb on + strandat 977.542 kb on + strandat 977.587 kb on - strandat 977.714 kb on + strandat 977.778 kb on + strandat 977.778 kb on + strandat 977.779 kb on - strandat 977.779 kb on - strandat 977.779 kb on - strandat 977.779 kb on - strandat 977.794 kb on - strandat 977.982 kb on - strand, within Pf6N2E2_836at 977.982 kb on - strand, within Pf6N2E2_836at 978.126 kb on + strand, within Pf6N2E2_836at 978.127 kb on - strand, within Pf6N2E2_836

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxide 0.05 M
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975,312 + Pf6N2E2_834 0.75 +2.4
975,312 + Pf6N2E2_834 0.75 +1.0
975,313 - Pf6N2E2_834 0.75 -0.7
975,371 + Pf6N2E2_834 0.77 +0.0
975,371 + Pf6N2E2_834 0.77 +0.5
975,371 + Pf6N2E2_834 0.77 +1.0
975,371 + Pf6N2E2_834 0.77 +0.3
975,371 + Pf6N2E2_834 0.77 +0.4
975,371 + Pf6N2E2_834 0.77 +1.0
975,371 + Pf6N2E2_834 0.77 +1.2
975,371 + Pf6N2E2_834 0.77 +0.6
975,371 + Pf6N2E2_834 0.77 -0.3
975,371 + Pf6N2E2_834 0.77 -0.4
975,371 + Pf6N2E2_834 0.77 +0.5
975,371 + Pf6N2E2_834 0.77 +0.4
975,372 - Pf6N2E2_834 0.77 +0.8
975,372 - Pf6N2E2_834 0.77 +0.9
975,372 - Pf6N2E2_834 0.77 +1.4
975,372 - Pf6N2E2_834 0.77 +1.3
975,372 - Pf6N2E2_834 0.77 -0.3
975,372 - Pf6N2E2_834 0.77 +0.4
975,372 - Pf6N2E2_834 0.77 -1.6
975,372 - Pf6N2E2_834 0.77 +0.3
975,372 - Pf6N2E2_834 0.77 -1.0
975,372 - Pf6N2E2_834 0.77 -0.9
975,409 - Pf6N2E2_834 0.78 -1.9
975,464 + Pf6N2E2_834 0.80 -1.3
975,465 - Pf6N2E2_834 0.80 -0.9
975,465 - Pf6N2E2_834 0.80 -0.7
975,710 + Pf6N2E2_834 0.88 +0.3
975,711 - Pf6N2E2_834 0.88 -0.8
975,860 + +0.1
975,861 - +0.2
975,861 - -0.2
976,015 + -0.7
976,015 + -0.9
976,015 + -1.1
976,015 + -0.7
976,016 - +0.0
976,067 + -0.1
976,068 - +1.4
976,077 - -0.3
976,079 - -0.7
976,136 + -0.9
976,136 + +0.1
976,136 + +1.3
976,136 + +0.1
976,136 + +0.6
976,136 + -0.6
976,136 + -0.2
976,136 + +0.5
976,136 + -0.3
976,136 + +0.6
976,137 - -1.1
976,137 - -0.0
976,210 + +0.2
976,219 + +0.9
976,219 + +0.2
976,220 - +0.6
976,256 + -1.3
976,256 + +0.4
976,256 + +0.8
976,256 + -0.2
976,733 + Pf6N2E2_835 0.46 +0.5
976,733 + Pf6N2E2_835 0.46 -0.2
976,733 + Pf6N2E2_835 0.46 -1.8
976,733 + Pf6N2E2_835 0.46 +0.1
976,733 + Pf6N2E2_835 0.46 -0.8
976,734 - Pf6N2E2_835 0.46 -0.3
976,734 - Pf6N2E2_835 0.46 -0.0
977,078 + Pf6N2E2_835 0.73 +1.6
977,079 - Pf6N2E2_835 0.73 -0.3
977,171 + Pf6N2E2_835 0.80 -0.2
977,171 + Pf6N2E2_835 0.80 -2.1
977,171 + Pf6N2E2_835 0.80 -0.2
977,172 - Pf6N2E2_835 0.80 -0.8
977,181 - Pf6N2E2_835 0.81 +0.1
977,477 + -0.8
977,542 + -0.5
977,542 + +0.4
977,542 + -1.1
977,587 - +0.7
977,714 + -0.6
977,778 + +0.2
977,778 + +0.7
977,779 - -0.9
977,779 - +0.9
977,779 - +0.0
977,779 - -1.2
977,794 - -1.2
977,982 - Pf6N2E2_836 0.19 -0.3
977,982 - Pf6N2E2_836 0.19 +0.4
978,126 + Pf6N2E2_836 0.27 +0.0
978,127 - Pf6N2E2_836 0.27 -0.2

Or see this region's nucleotide sequence