Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4615
Experiment: Hydroxide 0.05 M
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Hydroxide 0.05 M |
---|---|---|---|---|---|
remove | |||||
5,337,984 | + | +0.5 | |||
5,338,047 | + | +0.1 | |||
5,338,595 | + | Pf6N2E2_4614 | 0.11 | -0.2 | |
5,338,595 | + | Pf6N2E2_4614 | 0.11 | -2.2 | |
5,338,595 | + | Pf6N2E2_4614 | 0.11 | +0.0 | |
5,338,596 | - | Pf6N2E2_4614 | 0.12 | +0.7 | |
5,338,853 | + | Pf6N2E2_4614 | 0.82 | -2.1 | |
5,338,854 | - | Pf6N2E2_4614 | 0.82 | -1.0 | |
5,338,854 | - | Pf6N2E2_4614 | 0.82 | +1.4 | |
5,338,854 | - | Pf6N2E2_4614 | 0.82 | -0.5 | |
5,338,854 | - | Pf6N2E2_4614 | 0.82 | -1.2 | |
5,338,854 | - | Pf6N2E2_4614 | 0.82 | +0.2 | |
5,338,854 | - | Pf6N2E2_4614 | 0.82 | -0.7 | |
5,339,067 | + | Pf6N2E2_4615 | 0.26 | -0.8 | |
5,339,068 | - | Pf6N2E2_4615 | 0.26 | -2.2 | |
5,339,528 | + | +0.4 | |||
5,339,528 | + | +0.6 | |||
5,339,612 | + | -1.1 | |||
5,339,613 | - | +0.5 | |||
5,339,742 | - | +0.6 | |||
5,339,762 | + | -0.9 | |||
5,339,763 | - | -0.1 | |||
5,339,774 | + | +0.7 | |||
5,339,774 | + | -0.4 | |||
5,339,774 | + | -0.7 | |||
5,339,775 | - | +1.4 | |||
5,339,775 | - | +1.0 | |||
5,339,775 | - | -0.2 | |||
5,340,214 | + | Pf6N2E2_4616 | 0.28 | -0.2 | |
5,340,214 | + | Pf6N2E2_4616 | 0.28 | -0.4 | |
5,340,215 | - | Pf6N2E2_4616 | 0.28 | +0.3 |
Or see this region's nucleotide sequence