Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4157

Experiment: Hydroxide 0.05 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4156 and Pf6N2E2_4157 overlap by 4 nucleotidesPf6N2E2_4157 and Pf6N2E2_4158 are separated by 15 nucleotidesPf6N2E2_4158 and Pf6N2E2_4159 are separated by 198 nucleotides Pf6N2E2_4156 - GGDEF domain protein, at 4,837,365 to 4,839,431 _4156 Pf6N2E2_4157 - Endonuclease/exonuclease/phosphatase family protein, at 4,839,428 to 4,840,306 _4157 Pf6N2E2_4158 - Periplasmic thiol:disulfide interchange protein DsbA, at 4,840,322 to 4,840,963 _4158 Pf6N2E2_4159 - Cytochrome c4, at 4,841,162 to 4,841,773 _4159 Position (kb) 4839 4840 4841Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4838.437 kb on + strand, within Pf6N2E2_4156at 4838.437 kb on + strand, within Pf6N2E2_4156at 4838.577 kb on + strand, within Pf6N2E2_4156at 4838.578 kb on - strand, within Pf6N2E2_4156at 4838.578 kb on - strand, within Pf6N2E2_4156at 4839.186 kb on + strand, within Pf6N2E2_4156at 4839.387 kb on - strandat 4839.397 kb on + strandat 4839.397 kb on + strandat 4839.397 kb on + strandat 4839.397 kb on + strandat 4839.398 kb on - strandat 4839.398 kb on - strandat 4839.398 kb on - strandat 4839.398 kb on - strandat 4839.398 kb on - strandat 4839.398 kb on - strandat 4839.753 kb on + strand, within Pf6N2E2_4157at 4839.754 kb on - strand, within Pf6N2E2_4157at 4839.967 kb on - strand, within Pf6N2E2_4157at 4839.967 kb on - strand, within Pf6N2E2_4157at 4839.967 kb on - strand, within Pf6N2E2_4157at 4840.017 kb on + strand, within Pf6N2E2_4157at 4840.017 kb on + strand, within Pf6N2E2_4157at 4840.152 kb on + strand, within Pf6N2E2_4157at 4840.152 kb on + strand, within Pf6N2E2_4157at 4840.152 kb on + strand, within Pf6N2E2_4157at 4840.153 kb on - strand, within Pf6N2E2_4157at 4840.153 kb on - strand, within Pf6N2E2_4157at 4840.323 kb on + strandat 4840.323 kb on + strandat 4840.323 kb on + strandat 4840.323 kb on + strandat 4840.323 kb on + strandat 4840.324 kb on - strandat 4840.324 kb on - strandat 4840.324 kb on - strandat 4840.324 kb on - strandat 4840.324 kb on - strandat 4840.969 kb on - strandat 4840.969 kb on - strandat 4840.969 kb on - strandat 4841.008 kb on - strandat 4841.008 kb on - strandat 4841.008 kb on - strandat 4841.037 kb on + strandat 4841.038 kb on - strandat 4841.038 kb on - strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.133 kb on + strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.134 kb on - strandat 4841.181 kb on + strandat 4841.182 kb on - strandat 4841.304 kb on - strand, within Pf6N2E2_4159at 4841.304 kb on - strand, within Pf6N2E2_4159at 4841.304 kb on - strand, within Pf6N2E2_4159

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxide 0.05 M
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4,838,437 + Pf6N2E2_4156 0.52 -0.5
4,838,437 + Pf6N2E2_4156 0.52 +0.1
4,838,577 + Pf6N2E2_4156 0.59 -0.8
4,838,578 - Pf6N2E2_4156 0.59 -1.3
4,838,578 - Pf6N2E2_4156 0.59 +0.7
4,839,186 + Pf6N2E2_4156 0.88 -0.1
4,839,387 - -1.4
4,839,397 + +0.2
4,839,397 + -0.3
4,839,397 + +1.5
4,839,397 + +0.5
4,839,398 - -0.1
4,839,398 - -0.3
4,839,398 - -0.8
4,839,398 - -0.7
4,839,398 - +0.3
4,839,398 - -1.3
4,839,753 + Pf6N2E2_4157 0.37 -0.3
4,839,754 - Pf6N2E2_4157 0.37 -1.4
4,839,967 - Pf6N2E2_4157 0.61 +0.4
4,839,967 - Pf6N2E2_4157 0.61 -2.7
4,839,967 - Pf6N2E2_4157 0.61 -0.2
4,840,017 + Pf6N2E2_4157 0.67 -0.9
4,840,017 + Pf6N2E2_4157 0.67 -0.8
4,840,152 + Pf6N2E2_4157 0.82 -0.8
4,840,152 + Pf6N2E2_4157 0.82 -1.0
4,840,152 + Pf6N2E2_4157 0.82 -0.3
4,840,153 - Pf6N2E2_4157 0.82 -3.2
4,840,153 - Pf6N2E2_4157 0.82 +0.0
4,840,323 + -1.3
4,840,323 + -0.4
4,840,323 + +1.0
4,840,323 + -1.2
4,840,323 + +0.1
4,840,324 - -0.2
4,840,324 - -0.5
4,840,324 - +1.3
4,840,324 - +1.2
4,840,324 - +0.1
4,840,969 - +1.0
4,840,969 - -1.1
4,840,969 - -0.3
4,841,008 - +1.8
4,841,008 - -0.2
4,841,008 - -0.8
4,841,037 + +0.2
4,841,038 - +0.2
4,841,038 - -0.5
4,841,133 + -0.2
4,841,133 + +0.3
4,841,133 + -0.7
4,841,133 + +0.5
4,841,133 + +1.3
4,841,133 + -0.2
4,841,133 + -0.6
4,841,133 + +0.4
4,841,133 + +0.0
4,841,133 + +0.9
4,841,133 + -1.4
4,841,133 + -0.7
4,841,134 - -0.3
4,841,134 - +0.0
4,841,134 - -0.6
4,841,134 - +0.5
4,841,134 - -0.1
4,841,134 - +0.1
4,841,134 - -0.9
4,841,134 - -0.3
4,841,134 - +0.2
4,841,134 - -0.7
4,841,134 - -1.4
4,841,181 + +0.9
4,841,182 - -1.5
4,841,304 - Pf6N2E2_4159 0.23 -2.9
4,841,304 - Pf6N2E2_4159 0.23 -1.6
4,841,304 - Pf6N2E2_4159 0.23 -1.0

Or see this region's nucleotide sequence