Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18920 and HSERO_RS18925 are separated by 318 nucleotides HSERO_RS18925 and HSERO_RS18930 are separated by 138 nucleotides HSERO_RS18930 and HSERO_RS18935 are separated by 244 nucleotides
HSERO_RS18920: HSERO_RS18920 - metallophosphoesterase, at 4,342,618 to 4,343,775
_RS18920
HSERO_RS18925: HSERO_RS18925 - hypothetical protein, at 4,344,094 to 4,344,636
_RS18925
HSERO_RS18930: HSERO_RS18930 - polyphosphate kinase, at 4,344,775 to 4,345,686
_RS18930
HSERO_RS18935: HSERO_RS18935 - LysR family transcriptional regulator, at 4,345,931 to 4,346,878
_RS18935
Position (kb) 4344
4345
4346 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4343.898 kb on - strand at 4343.985 kb on + strand at 4344.035 kb on + strand at 4344.072 kb on - strand at 4344.201 kb on + strand, within HSERO_RS18925 at 4345.003 kb on - strand, within HSERO_RS18930 at 4345.380 kb on + strand, within HSERO_RS18930 at 4345.475 kb on + strand, within HSERO_RS18930 at 4345.483 kb on - strand, within HSERO_RS18930 at 4345.495 kb on - strand, within HSERO_RS18930 at 4345.598 kb on - strand at 4345.611 kb on - strand at 4345.775 kb on + strand at 4345.775 kb on + strand at 4346.034 kb on - strand, within HSERO_RS18935 at 4346.065 kb on + strand, within HSERO_RS18935 at 4346.213 kb on - strand, within HSERO_RS18935 at 4346.263 kb on + strand at 4346.377 kb on - strand, within HSERO_RS18935 at 4346.379 kb on + strand, within HSERO_RS18935 at 4346.524 kb on + strand at 4346.601 kb on + strand, within HSERO_RS18935 at 4346.609 kb on - strand, within HSERO_RS18935
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 4,343,898 - +0.2 4,343,985 + -0.1 4,344,035 + -0.8 4,344,072 - -3.3 4,344,201 + HSERO_RS18925 0.20 -0.7 4,345,003 - HSERO_RS18930 0.25 -0.9 4,345,380 + HSERO_RS18930 0.66 +0.0 4,345,475 + HSERO_RS18930 0.77 -0.8 4,345,483 - HSERO_RS18930 0.78 -0.2 4,345,495 - HSERO_RS18930 0.79 -0.3 4,345,598 - -0.4 4,345,611 - +0.6 4,345,775 + +0.3 4,345,775 + +0.5 4,346,034 - HSERO_RS18935 0.11 +0.2 4,346,065 + HSERO_RS18935 0.14 +0.4 4,346,213 - HSERO_RS18935 0.30 -0.6 4,346,263 + +0.3 4,346,377 - HSERO_RS18935 0.47 +0.5 4,346,379 + HSERO_RS18935 0.47 +0.7 4,346,524 + +1.5 4,346,601 + HSERO_RS18935 0.71 +1.7 4,346,609 - HSERO_RS18935 0.72 -1.1
Or see this region's nucleotide sequence