Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17905

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
4,114,900	+		HSERO_RS17900	0.25	+2.4
4,114,906	-		HSERO_RS17900	0.26	-0.6
4,115,328	-		HSERO_RS17900	0.64	-0.6
4,115,822	+				-0.3
4,115,868	+				+0.3
4,116,039	-		HSERO_RS17905	0.22	-0.9
4,116,087	-		HSERO_RS17905	0.26	-0.4
4,116,119	+		HSERO_RS17905	0.29	-0.9
4,116,127	-		HSERO_RS17905	0.30	-0.5
4,116,264	-		HSERO_RS17905	0.43	-1.1
4,116,397	+		HSERO_RS17905	0.56	-1.5
4,116,398	+		HSERO_RS17905	0.56	-0.4
4,116,450	+		HSERO_RS17905	0.61	-0.4
4,116,472	-		HSERO_RS17905	0.63	-0.9
4,116,553	+		HSERO_RS17905	0.71	-0.8
4,116,599	-		HSERO_RS17905	0.75	-0.3
4,116,660	-		HSERO_RS17905	0.81	-0.4
4,116,686	+		HSERO_RS17905	0.83	-0.3
4,116,873	+				-0.4
4,116,963	+				-0.1
4,116,963	+				+0.3
4,116,971	-				+1.1
4,117,038	+		HSERO_RS17910	0.28	-0.4
4,117,046	-		HSERO_RS17910	0.30	-0.2
4,117,046	-		HSERO_RS17910	0.30	-0.2
4,117,113	+		HSERO_RS17910	0.48	-0.4
4,117,155	+		HSERO_RS17910	0.60	+0.7
4,117,155	+		HSERO_RS17910	0.60	-0.1
4,117,163	-		HSERO_RS17910	0.62	+0.7
4,117,234	-		HSERO_RS17910	0.81	-0.4
4,117,296	+				+0.3
4,117,304	+				+0.5
4,117,312	-				-0.4
4,117,314	+				+0.9
4,117,314	+				+0.2
4,117,314	+				+0.2
4,117,339	-				+0.9
4,117,339	-				+1.3
4,117,341	+				+1.1
4,117,361	-				+0.2
4,117,376	-				-0.5
4,117,379	+		HSERO_RS17915	0.10	-1.8
4,117,383	+		HSERO_RS17915	0.11	+0.3
4,117,428	-		HSERO_RS17915	0.23	-2.7
4,117,441	+		HSERO_RS17915	0.27	-0.0
4,117,441	-		HSERO_RS17915	0.27	-0.0
4,117,536	+		HSERO_RS17915	0.52	-0.5
4,117,541	+		HSERO_RS17915	0.53	-0.2
4,117,554	-		HSERO_RS17915	0.57	+0.6
4,117,685	+				-0.2
4,117,685	+				+0.6
4,117,799	+				-0.3
4,117,799	+				-0.3
4,117,822	+				+0.4
4,117,822	-				-0.1