Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16625

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
3,805,264	+				+0.3
3,805,432	-		HSERO_RS16620	0.16	-1.1
3,805,528	+		HSERO_RS16620	0.27	+0.1
3,805,544	+		HSERO_RS16620	0.29	-0.2
3,805,558	+		HSERO_RS16620	0.30	+0.5
3,805,767	+		HSERO_RS16620	0.55	-0.1
3,806,117	+				-0.4
3,806,163	+				+1.3
3,806,193	+				-0.6
3,806,345	+				-0.3
3,806,353	-				+0.0
3,806,353	-				+0.4
3,806,497	+		HSERO_RS16625	0.19	-1.0
3,806,608	-		HSERO_RS16625	0.28	-0.2
3,806,627	-		HSERO_RS16625	0.30	-0.4
3,806,948	-		HSERO_RS16625	0.55	-0.0
3,807,161	+		HSERO_RS16625	0.73	+0.4
3,807,297	+		HSERO_RS16625	0.83	-0.0
3,807,297	+				+3.2
3,807,305	-		HSERO_RS16625	0.84	-0.4
3,807,392	-				-0.2
3,807,394	+				+0.2
3,807,420	+				-1.3
3,807,487	+				+1.1
3,807,564	+				+0.5
3,807,572	-				-0.3
3,807,627	+				+0.9
3,807,772	+				+1.0
3,807,780	-				+0.1
3,807,794	+				+0.2
3,807,853	+		HSERO_RS16630	0.10	-0.1
3,808,023	-		HSERO_RS16630	0.21	+0.1
3,808,261	-		HSERO_RS16630	0.35	+0.5
3,808,367	+		HSERO_RS16630	0.41	+0.0
3,808,375	-		HSERO_RS16630	0.41	+0.9
3,808,404	+		HSERO_RS16630	0.43	-0.5