Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10045

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
2,271,927	-				-0.9
2,272,021	+				+0.1
2,272,056	+				+0.7
2,272,204	+				+1.7
2,272,204	+				+1.1
2,272,212	-				+0.1
2,272,227	-				-0.3
2,272,247	+				-0.1
2,272,507	+		HSERO_RS10040	0.39	+0.4
2,272,702	-				-0.3
2,272,731	+				+1.1
2,272,913	+				+0.3
2,272,935	+				-0.4
2,273,056	-		HSERO_RS10045	0.20	+0.3
2,273,056	-		HSERO_RS10045	0.20	-0.8
2,273,385	+		HSERO_RS10045	0.52	-0.6
2,273,417	-		HSERO_RS10045	0.55	-0.6
2,273,429	+		HSERO_RS10045	0.56	+0.1
2,273,578	+		HSERO_RS10045	0.71	-0.0
2,273,592	-		HSERO_RS10045	0.72	-0.3
2,273,592	-		HSERO_RS10045	0.72	-0.9
2,273,701	+		HSERO_RS10045	0.82	-0.7
2,273,842	+				+0.4
2,273,843	+				+0.3
2,274,798	-		HSERO_RS10050	0.81	+2.3