Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04990

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
1,097,311	+		HSERO_RS04985	0.43	+0.2
1,097,401	+				-1.4
1,097,503	+		HSERO_RS04985	0.58	-0.9
1,097,570	-		HSERO_RS04985	0.64	-0.7
1,097,570	-		HSERO_RS04985	0.64	+0.6
1,097,570	-		HSERO_RS04985	0.64	-0.0
1,097,606	-		HSERO_RS04985	0.67	+0.7
1,097,641	+		HSERO_RS04985	0.70	-0.1
1,097,641	+		HSERO_RS04985	0.70	+0.3
1,097,658	+		HSERO_RS04985	0.71	-0.1
1,097,768	+		HSERO_RS04985	0.80	-0.3
1,097,778	+		HSERO_RS04985	0.81	-0.9
1,097,778	+		HSERO_RS04985	0.81	+0.7
1,098,016	-				+0.2
1,098,187	+				-0.6
1,098,201	-				-0.2
1,100,520	-				-0.6
1,100,590	-				+0.4
1,100,623	-				-0.0
1,100,634	+				+0.4
1,100,634	+				+0.1
1,100,644	+				+0.4
1,100,654	-				-0.5
1,100,684	+				+0.7
1,100,691	-				-0.1
1,100,692	-				+0.0
1,100,699	+				+0.1
1,100,699	+				+0.1
1,100,699	+				-0.5
1,100,707	-				-0.3
1,100,735	+				+0.5
1,100,735	+				+0.3
1,100,743	-				-0.1
1,100,743	-				+0.4
1,100,745	+				-0.0
1,100,747	+				+0.6
1,100,753	-				-0.0
1,100,754	+				+0.5
1,100,754	+				-0.2
1,100,754	+				+0.7
1,100,762	-				-0.2
1,100,764	+				+0.7
1,100,772	-				+1.9
1,100,784	-				+0.5
1,100,788	+				+0.4
1,100,810	+				+0.2
1,100,811	+				+0.3
1,100,811	+				-0.3
1,100,811	+				+0.7
1,100,811	+				-0.3
1,100,811	+				-0.3
1,100,816	+				-0.3
1,100,816	+				-0.6
1,100,818	+				-0.3
1,100,824	-				+0.1
1,100,826	-				+0.9
1,100,826	-				+0.6
1,100,835	+				+0.4
1,100,835	+				+0.0
1,100,835	+				+0.2
1,100,843	-				+0.2
1,100,846	+				+0.6
1,100,846	+				+0.1
1,100,856	+				+0.4
1,100,863	+				+0.4
1,100,866	-				+0.1
1,100,866	-				-0.8
1,100,870	+				-0.6
1,100,871	-				-0.6
1,100,871	-				+0.2
1,100,871	-				+0.2
1,100,872	-				+0.0
1,100,879	-				-0.4
1,100,879	-				+0.1
1,100,881	-				+0.4
1,100,885	+				+0.0
1,100,885	+				+0.2
1,100,921	+				+0.0
1,100,921	+				-0.6
1,100,924	+				-0.2
1,100,924	+				+1.1
1,100,924	+				-0.8
1,100,924	+				-0.2
1,100,926	+				+1.2
1,100,926	+				-0.9
1,100,926	+				+0.5
1,100,926	+				-0.4
1,100,926	+				-0.4
1,100,926	+				+1.9
1,100,926	+				+0.3
1,100,926	+				-0.6
1,100,926	+				+1.1
1,100,929	-				+0.3
1,100,929	-				-0.1
1,100,929	-				-0.6
1,100,929	-				+0.3
1,100,932	-				+0.1
1,100,932	-				+1.1
1,100,934	-				-1.2
1,100,934	-				+0.9
1,100,934	-				+0.2
1,100,934	-				+1.6
1,100,934	-				+0.2
1,100,934	-				+0.3
1,100,934	-				-0.1
1,100,935	+				+0.2
1,100,940	+				-0.5
1,100,942	+				+1.1
1,100,942	+				-0.3
1,100,943	+				+1.9
1,100,943	+				+0.3
1,100,943	+				+0.4
1,100,943	+				+0.2
1,100,943	-				-0.2
1,100,943	-				+0.5
1,100,943	-				-0.5
1,100,947	-				-0.4
1,100,951	-				-0.4
1,100,951	-				+0.9
1,100,951	-				+0.1