Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04565 and HSERO_RS04570 are separated by 2 nucleotides HSERO_RS04570 and HSERO_RS04575 are separated by 194 nucleotides HSERO_RS04575 and HSERO_RS04580 are separated by 61 nucleotides
HSERO_RS04565: HSERO_RS04565 - bacteriophage capsid portal protein, at 997,557 to 998,609
_RS04565
HSERO_RS04570: HSERO_RS04570 - hypothetical protein, at 998,612 to 998,824
_RS04570
HSERO_RS04575: HSERO_RS04575 - receiver domain-containing protein, at 999,019 to 999,396
_RS04575
HSERO_RS04580: HSERO_RS04580 - hypothetical protein, at 999,458 to 999,676
_RS04580
Position (kb) 998
999 Strain fitness (log2 ratio) -1
0
1 at 997.646 kb on - strand at 997.808 kb on + strand, within HSERO_RS04565 at 997.868 kb on - strand, within HSERO_RS04565 at 997.909 kb on - strand, within HSERO_RS04565 at 998.007 kb on + strand, within HSERO_RS04565 at 998.065 kb on + strand, within HSERO_RS04565 at 998.093 kb on - strand, within HSERO_RS04565 at 998.148 kb on + strand, within HSERO_RS04565 at 998.332 kb on + strand, within HSERO_RS04565 at 998.445 kb on - strand, within HSERO_RS04565 at 998.585 kb on + strand at 998.674 kb on - strand, within HSERO_RS04570 at 998.789 kb on + strand, within HSERO_RS04570 at 998.796 kb on + strand, within HSERO_RS04570 at 998.796 kb on + strand, within HSERO_RS04570 at 998.796 kb on + strand, within HSERO_RS04570 at 998.802 kb on + strand, within HSERO_RS04570 at 998.804 kb on - strand at 998.857 kb on - strand at 998.994 kb on + strand at 999.002 kb on + strand at 999.002 kb on + strand at 999.031 kb on - strand at 999.041 kb on + strand at 999.046 kb on + strand at 999.046 kb on + strand at 999.049 kb on - strand at 999.054 kb on - strand at 999.096 kb on + strand, within HSERO_RS04575 at 999.118 kb on - strand, within HSERO_RS04575 at 999.124 kb on - strand, within HSERO_RS04575 at 999.129 kb on - strand, within HSERO_RS04575 at 999.275 kb on + strand, within HSERO_RS04575 at 999.277 kb on + strand, within HSERO_RS04575 at 999.282 kb on + strand, within HSERO_RS04575 at 999.282 kb on + strand, within HSERO_RS04575 at 999.285 kb on - strand, within HSERO_RS04575 at 999.287 kb on + strand, within HSERO_RS04575 at 999.290 kb on - strand, within HSERO_RS04575 at 999.290 kb on - strand, within HSERO_RS04575 at 999.305 kb on + strand, within HSERO_RS04575 at 999.356 kb on - strand, within HSERO_RS04575 at 999.385 kb on - strand at 999.386 kb on - strand at 999.405 kb on - strand at 999.405 kb on - strand at 999.432 kb on + strand at 999.440 kb on - strand at 999.476 kb on + strand at 999.512 kb on + strand, within HSERO_RS04580 at 999.514 kb on + strand, within HSERO_RS04580 at 999.518 kb on + strand, within HSERO_RS04580 at 999.538 kb on + strand, within HSERO_RS04580 at 999.538 kb on + strand, within HSERO_RS04580 at 999.538 kb on + strand, within HSERO_RS04580 at 999.541 kb on + strand, within HSERO_RS04580 at 999.546 kb on - strand, within HSERO_RS04580 at 999.579 kb on - strand, within HSERO_RS04580 at 999.613 kb on + strand, within HSERO_RS04580 at 999.652 kb on + strand, within HSERO_RS04580 at 999.665 kb on - strand at 999.707 kb on + strand at 999.707 kb on + strand at 999.707 kb on + strand at 999.709 kb on + strand at 999.710 kb on + strand at 999.712 kb on + strand at 999.715 kb on - strand at 999.720 kb on - strand at 999.720 kb on - strand at 999.731 kb on + strand at 999.739 kb on - strand at 999.749 kb on - strand at 999.751 kb on - strand at 999.795 kb on - strand at 999.801 kb on + strand at 999.809 kb on - strand at 999.809 kb on - strand at 999.809 kb on - strand at 999.809 kb on - strand at 999.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 997,646 - +0.0 997,808 + HSERO_RS04565 0.24 -0.5 997,868 - HSERO_RS04565 0.30 +0.5 997,909 - HSERO_RS04565 0.33 -0.5 998,007 + HSERO_RS04565 0.43 +0.4 998,065 + HSERO_RS04565 0.48 -1.0 998,093 - HSERO_RS04565 0.51 -0.1 998,148 + HSERO_RS04565 0.56 -0.6 998,332 + HSERO_RS04565 0.74 +0.2 998,445 - HSERO_RS04565 0.84 -0.2 998,585 + +0.5 998,674 - HSERO_RS04570 0.29 -0.9 998,789 + HSERO_RS04570 0.83 -0.5 998,796 + HSERO_RS04570 0.86 -0.7 998,796 + HSERO_RS04570 0.86 +0.2 998,796 + HSERO_RS04570 0.86 -0.3 998,802 + HSERO_RS04570 0.89 -0.7 998,804 - -0.5 998,857 - +0.2 998,994 + +0.3 999,002 + +0.1 999,002 + -0.5 999,031 - +0.5 999,041 + -0.3 999,046 + -0.8 999,046 + -1.4 999,049 - -0.1 999,054 - -0.1 999,096 + HSERO_RS04575 0.20 +0.2 999,118 - HSERO_RS04575 0.26 +0.2 999,124 - HSERO_RS04575 0.28 -0.7 999,129 - HSERO_RS04575 0.29 -0.5 999,275 + HSERO_RS04575 0.68 +0.3 999,277 + HSERO_RS04575 0.68 -0.1 999,282 + HSERO_RS04575 0.70 -0.2 999,282 + HSERO_RS04575 0.70 +0.2 999,285 - HSERO_RS04575 0.70 +0.1 999,287 + HSERO_RS04575 0.71 -1.0 999,290 - HSERO_RS04575 0.72 -0.1 999,290 - HSERO_RS04575 0.72 -0.1 999,305 + HSERO_RS04575 0.76 -0.2 999,356 - HSERO_RS04575 0.89 -0.4 999,385 - +0.2 999,386 - -0.9 999,405 - -0.1 999,405 - -0.0 999,432 + +0.1 999,440 - -0.0 999,476 + -0.3 999,512 + HSERO_RS04580 0.25 -0.2 999,514 + HSERO_RS04580 0.26 +0.0 999,518 + HSERO_RS04580 0.27 -0.5 999,538 + HSERO_RS04580 0.37 -0.9 999,538 + HSERO_RS04580 0.37 +0.7 999,538 + HSERO_RS04580 0.37 +1.4 999,541 + HSERO_RS04580 0.38 -0.1 999,546 - HSERO_RS04580 0.40 -0.1 999,579 - HSERO_RS04580 0.55 -0.4 999,613 + HSERO_RS04580 0.71 +0.0 999,652 + HSERO_RS04580 0.89 +0.5 999,665 - -1.6 999,707 + -0.6 999,707 + -0.4 999,707 + -0.2 999,709 + +0.7 999,710 + +0.1 999,712 + +0.1 999,715 - -0.3 999,720 - +0.2 999,720 - -0.1 999,731 + -0.3 999,739 - -0.9 999,749 - +0.9 999,751 - -0.5 999,795 - -0.1 999,801 + +1.0 999,809 - -0.6 999,809 - +0.9 999,809 - -0.9 999,809 - -0.4 999,818 - +1.3
Or see this region's nucleotide sequence