Experiment: 4C survival; 1152 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30090 and AO356_30095 are separated by 239 nucleotides AO356_30095 and AO356_30100 overlap by 4 nucleotides AO356_30100 and AO356_30105 overlap by 19 nucleotides
AO356_30090: AO356_30090 - XRE family transcriptional regulator, at 7,023,086 to 7,023,685
_30090
AO356_30095: AO356_30095 - formyltetrahydrofolate deformylase, at 7,023,925 to 7,024,791
_30095
AO356_30100: AO356_30100 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase, at 7,024,788 to 7,025,693
_30100
AO356_30105: AO356_30105 - sarcosine oxidase subunit beta, at 7,025,675 to 7,026,916
_30105
Position (kb)
7023
7024
7025 Strain fitness (log2 ratio)
-1
0
1
2 at 7022.959 kb on + strand at 7022.959 kb on + strand at 7022.959 kb on + strand at 7022.960 kb on - strand at 7022.960 kb on - strand at 7022.961 kb on + strand at 7022.961 kb on + strand at 7022.961 kb on + strand at 7022.962 kb on - strand at 7022.962 kb on - strand at 7022.963 kb on + strand at 7022.964 kb on - strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.086 kb on - strand at 7023.086 kb on - strand at 7023.086 kb on - strand at 7023.125 kb on + strand at 7023.126 kb on - strand at 7023.175 kb on - strand, within AO356_30090 at 7023.397 kb on + strand, within AO356_30090 at 7023.397 kb on + strand, within AO356_30090 at 7023.397 kb on + strand, within AO356_30090 at 7023.398 kb on - strand, within AO356_30090 at 7023.398 kb on - strand, within AO356_30090 at 7023.398 kb on - strand, within AO356_30090 at 7023.401 kb on + strand, within AO356_30090 at 7023.401 kb on + strand, within AO356_30090 at 7023.401 kb on + strand, within AO356_30090 at 7023.401 kb on + strand, within AO356_30090 at 7023.402 kb on - strand, within AO356_30090 at 7023.402 kb on - strand, within AO356_30090 at 7023.402 kb on - strand, within AO356_30090 at 7023.449 kb on + strand, within AO356_30090 at 7023.449 kb on + strand, within AO356_30090 at 7023.449 kb on + strand, within AO356_30090 at 7023.449 kb on + strand, within AO356_30090 at 7023.450 kb on - strand, within AO356_30090 at 7023.450 kb on - strand, within AO356_30090 at 7023.450 kb on - strand, within AO356_30090 at 7023.542 kb on + strand, within AO356_30090 at 7023.683 kb on + strand at 7023.684 kb on - strand at 7023.802 kb on - strand at 7023.803 kb on + strand at 7023.804 kb on - strand at 7023.804 kb on - strand at 7023.804 kb on - strand at 7023.887 kb on + strand at 7024.004 kb on - strand at 7024.024 kb on + strand, within AO356_30095 at 7024.025 kb on - strand, within AO356_30095 at 7024.355 kb on - strand, within AO356_30095 at 7024.451 kb on - strand, within AO356_30095 at 7024.451 kb on - strand, within AO356_30095 at 7024.451 kb on - strand, within AO356_30095 at 7024.601 kb on - strand, within AO356_30095 at 7024.601 kb on - strand, within AO356_30095 at 7024.666 kb on + strand, within AO356_30095 at 7024.667 kb on - strand, within AO356_30095 at 7024.667 kb on - strand, within AO356_30095 at 7024.667 kb on - strand, within AO356_30095 at 7024.667 kb on - strand, within AO356_30095 at 7024.935 kb on + strand at 7024.935 kb on + strand, within AO356_30100 at 7024.935 kb on + strand, within AO356_30100 at 7024.935 kb on + strand, within AO356_30100 at 7024.935 kb on + strand, within AO356_30100 at 7024.936 kb on - strand, within AO356_30100 at 7025.147 kb on - strand, within AO356_30100 at 7025.147 kb on - strand, within AO356_30100 at 7025.229 kb on + strand, within AO356_30100 at 7025.258 kb on - strand, within AO356_30100 at 7025.674 kb on + strand at 7025.688 kb on + strand at 7025.762 kb on + strand at 7025.763 kb on - strand at 7025.763 kb on - strand at 7025.770 kb on - strand at 7025.770 kb on - strand at 7025.770 kb on - strand at 7025.770 kb on - strand at 7025.770 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs remove 7,022,959 + -0.1 7,022,959 + -0.3 7,022,959 + -1.3 7,022,960 - +0.5 7,022,960 - -0.2 7,022,961 + -0.1 7,022,961 + +0.0 7,022,961 + -1.3 7,022,962 - +0.1 7,022,962 - +0.1 7,022,963 + -0.6 7,022,964 - -0.3 7,023,085 + -1.4 7,023,085 + -0.1 7,023,085 + -0.7 7,023,085 + +0.5 7,023,085 + -0.2 7,023,085 + +0.3 7,023,085 + +0.3 7,023,085 + +0.4 7,023,086 - -0.3 7,023,086 - -0.6 7,023,086 - +0.0 7,023,125 + +1.8 7,023,126 - -0.4 7,023,175 - AO356_30090 0.15 +0.6 7,023,397 + AO356_30090 0.52 -0.5 7,023,397 + AO356_30090 0.52 +0.4 7,023,397 + AO356_30090 0.52 +1.0 7,023,398 - AO356_30090 0.52 +1.4 7,023,398 - AO356_30090 0.52 +0.4 7,023,398 - AO356_30090 0.52 -0.4 7,023,401 + AO356_30090 0.53 -1.5 7,023,401 + AO356_30090 0.53 -0.8 7,023,401 + AO356_30090 0.53 -0.6 7,023,401 + AO356_30090 0.53 -1.1 7,023,402 - AO356_30090 0.53 +0.2 7,023,402 - AO356_30090 0.53 -1.6 7,023,402 - AO356_30090 0.53 -0.4 7,023,449 + AO356_30090 0.60 -0.2 7,023,449 + AO356_30090 0.60 -0.2 7,023,449 + AO356_30090 0.60 -1.1 7,023,449 + AO356_30090 0.60 -0.2 7,023,450 - AO356_30090 0.61 +1.5 7,023,450 - AO356_30090 0.61 -0.3 7,023,450 - AO356_30090 0.61 -0.8 7,023,542 + AO356_30090 0.76 -0.9 7,023,683 + +0.4 7,023,684 - +0.2 7,023,802 - +0.9 7,023,803 + -0.7 7,023,804 - -0.4 7,023,804 - +0.2 7,023,804 - +0.1 7,023,887 + +2.4 7,024,004 - +0.6 7,024,024 + AO356_30095 0.11 -0.4 7,024,025 - AO356_30095 0.12 +0.1 7,024,355 - AO356_30095 0.50 +0.9 7,024,451 - AO356_30095 0.61 +0.3 7,024,451 - AO356_30095 0.61 -0.1 7,024,451 - AO356_30095 0.61 +0.8 7,024,601 - AO356_30095 0.78 +1.5 7,024,601 - AO356_30095 0.78 -1.2 7,024,666 + AO356_30095 0.85 +2.1 7,024,667 - AO356_30095 0.86 +0.1 7,024,667 - AO356_30095 0.86 +0.3 7,024,667 - AO356_30095 0.86 -1.3 7,024,667 - AO356_30095 0.86 +0.6 7,024,935 + +2.0 7,024,935 + AO356_30100 0.16 +0.1 7,024,935 + AO356_30100 0.16 +0.0 7,024,935 + AO356_30100 0.16 -0.4 7,024,935 + AO356_30100 0.16 -0.0 7,024,936 - AO356_30100 0.16 -0.9 7,025,147 - AO356_30100 0.40 +1.3 7,025,147 - AO356_30100 0.40 +0.2 7,025,229 + AO356_30100 0.49 -0.1 7,025,258 - AO356_30100 0.52 -0.4 7,025,674 + +0.1 7,025,688 + -0.7 7,025,762 + +1.0 7,025,763 - +0.6 7,025,763 - +0.7 7,025,770 - +0.0 7,025,770 - +0.1 7,025,770 - -0.2 7,025,770 - -1.0 7,025,770 - +0.8
Or see this region's nucleotide sequence