Experiment: 4C survival; 1152 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29345 and AO356_29350 are separated by 370 nucleotides AO356_29350 and AO356_29355 are separated by 171 nucleotides AO356_29355 and AO356_29360 are separated by 30 nucleotides
AO356_29345: AO356_29345 - LysR family transcriptional regulator, at 6,825,034 to 6,825,939
_29345
AO356_29350: AO356_29350 - hypothetical protein, at 6,826,310 to 6,826,585
_29350
AO356_29355: AO356_29355 - hypothetical protein, at 6,826,757 to 6,827,197
_29355
AO356_29360: AO356_29360 - hypothetical protein, at 6,827,228 to 6,830,137
_29360
Position (kb)
6826
6827 Strain fitness (log2 ratio)
-1
0
1 at 6825.370 kb on - strand, within AO356_29345 at 6825.412 kb on - strand, within AO356_29345 at 6825.641 kb on + strand, within AO356_29345 at 6825.952 kb on + strand at 6825.994 kb on + strand at 6826.040 kb on + strand at 6826.040 kb on + strand at 6826.040 kb on + strand at 6826.041 kb on - strand at 6826.041 kb on - strand at 6826.302 kb on + strand at 6826.358 kb on + strand, within AO356_29350 at 6826.359 kb on - strand, within AO356_29350 at 6826.423 kb on + strand, within AO356_29350 at 6826.424 kb on - strand, within AO356_29350 at 6826.511 kb on - strand, within AO356_29350 at 6826.583 kb on + strand at 6826.584 kb on - strand at 6826.584 kb on - strand at 6826.584 kb on - strand at 6826.589 kb on + strand at 6826.590 kb on - strand at 6826.590 kb on - strand at 6826.712 kb on + strand at 6826.774 kb on + strand at 6826.774 kb on + strand at 6826.774 kb on + strand at 6826.775 kb on - strand at 6826.775 kb on - strand at 6826.775 kb on - strand at 6826.775 kb on - strand at 6826.775 kb on - strand at 6826.775 kb on - strand at 6826.778 kb on + strand at 6826.778 kb on + strand at 6826.779 kb on - strand at 6826.779 kb on - strand at 6826.955 kb on + strand, within AO356_29355 at 6827.543 kb on + strand, within AO356_29360 at 6827.544 kb on - strand, within AO356_29360
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs remove 6,825,370 - AO356_29345 0.37 -0.6 6,825,412 - AO356_29345 0.42 -0.4 6,825,641 + AO356_29345 0.67 -0.1 6,825,952 + +0.0 6,825,994 + +0.6 6,826,040 + +0.2 6,826,040 + +0.6 6,826,040 + +1.0 6,826,041 - +1.7 6,826,041 - +0.9 6,826,302 + -0.6 6,826,358 + AO356_29350 0.17 +0.1 6,826,359 - AO356_29350 0.18 +0.6 6,826,423 + AO356_29350 0.41 -0.3 6,826,424 - AO356_29350 0.41 +0.8 6,826,511 - AO356_29350 0.73 +0.8 6,826,583 + +0.6 6,826,584 - -0.5 6,826,584 - +1.4 6,826,584 - +0.5 6,826,589 + -0.5 6,826,590 - -0.6 6,826,590 - +0.7 6,826,712 + -0.1 6,826,774 + +1.1 6,826,774 + -0.1 6,826,774 + +0.6 6,826,775 - +1.4 6,826,775 - +0.4 6,826,775 - -0.5 6,826,775 - -0.1 6,826,775 - -0.1 6,826,775 - -1.3 6,826,778 + -0.2 6,826,778 + -0.4 6,826,779 - -0.3 6,826,779 - +0.6 6,826,955 + AO356_29355 0.45 -0.5 6,827,543 + AO356_29360 0.11 +0.5 6,827,544 - AO356_29360 0.11 -1.5
Or see this region's nucleotide sequence