Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28550

Experiment: 4C survival; 1152 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28545 and AO356_28550 are separated by 53 nucleotidesAO356_28550 and AO356_28555 are separated by 4 nucleotides AO356_28545: AO356_28545 - alcohol dehydrogenase, at 6,634,711 to 6,635,742 _28545 AO356_28550: AO356_28550 - bifunctional D-altronate/D-mannonate dehydratase, at 6,635,796 to 6,637,007 _28550 AO356_28555: AO356_28555 - ketodeoxygluconokinase, at 6,637,012 to 6,638,013 _28555 Position (kb) 6635 6636 6637 6638Strain fitness (log2 ratio) -2 -1 0 1at 6635.646 kb on - strandat 6635.854 kb on + strandat 6635.855 kb on - strandat 6635.855 kb on - strandat 6636.163 kb on + strand, within AO356_28550at 6636.163 kb on + strand, within AO356_28550at 6636.439 kb on + strand, within AO356_28550at 6636.439 kb on + strand, within AO356_28550at 6636.448 kb on + strand, within AO356_28550at 6636.502 kb on + strand, within AO356_28550at 6636.532 kb on + strand, within AO356_28550at 6636.532 kb on + strand, within AO356_28550at 6636.580 kb on + strand, within AO356_28550at 6636.649 kb on + strand, within AO356_28550at 6636.692 kb on - strand, within AO356_28550at 6636.785 kb on - strand, within AO356_28550at 6636.803 kb on - strand, within AO356_28550at 6637.304 kb on - strand, within AO356_28555at 6637.320 kb on - strand, within AO356_28555at 6637.418 kb on + strand, within AO356_28555at 6637.463 kb on + strand, within AO356_28555at 6637.463 kb on + strand, within AO356_28555at 6637.464 kb on - strand, within AO356_28555at 6637.574 kb on + strand, within AO356_28555at 6637.580 kb on + strand, within AO356_28555at 6637.581 kb on - strand, within AO356_28555at 6637.706 kb on + strand, within AO356_28555

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs
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6,635,646 - +0.7
6,635,854 + -0.1
6,635,855 - -1.7
6,635,855 - +0.7
6,636,163 + AO356_28550 0.30 +0.4
6,636,163 + AO356_28550 0.30 +1.0
6,636,439 + AO356_28550 0.53 +0.1
6,636,439 + AO356_28550 0.53 +0.1
6,636,448 + AO356_28550 0.54 +0.2
6,636,502 + AO356_28550 0.58 +0.6
6,636,532 + AO356_28550 0.61 +0.5
6,636,532 + AO356_28550 0.61 +0.3
6,636,580 + AO356_28550 0.65 -0.4
6,636,649 + AO356_28550 0.70 +0.3
6,636,692 - AO356_28550 0.74 -0.7
6,636,785 - AO356_28550 0.82 -0.5
6,636,803 - AO356_28550 0.83 +0.7
6,637,304 - AO356_28555 0.29 -0.4
6,637,320 - AO356_28555 0.31 -1.9
6,637,418 + AO356_28555 0.41 -1.2
6,637,463 + AO356_28555 0.45 +0.1
6,637,463 + AO356_28555 0.45 -2.0
6,637,464 - AO356_28555 0.45 -0.3
6,637,574 + AO356_28555 0.56 +0.4
6,637,580 + AO356_28555 0.57 -1.5
6,637,581 - AO356_28555 0.57 +0.3
6,637,706 + AO356_28555 0.69 -0.1

Or see this region's nucleotide sequence