Experiment: 4C survival; 1152 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27495 and AO356_27500 are separated by 222 nucleotides AO356_27500 and AO356_27505 are separated by 193 nucleotides AO356_27505 and AO356_27510 are separated by 58 nucleotides
AO356_27495: AO356_27495 - short-chain dehydrogenase, at 6,266,344 to 6,267,135
_27495
AO356_27500: AO356_27500 - amino acid permease, at 6,267,358 to 6,268,806
_27500
AO356_27505: AO356_27505 - transcriptional regulator, at 6,269,000 to 6,269,740
_27505
AO356_27510: AO356_27510 - AraC family transcriptional regulator, at 6,269,799 to 6,270,767
_27510
Position (kb)
6267
6268
6269 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6266.368 kb on - strand at 6266.528 kb on + strand, within AO356_27495 at 6266.529 kb on - strand, within AO356_27495 at 6266.761 kb on - strand, within AO356_27495 at 6266.761 kb on - strand, within AO356_27495 at 6266.806 kb on + strand, within AO356_27495 at 6266.935 kb on - strand, within AO356_27495 at 6267.046 kb on + strand, within AO356_27495 at 6267.047 kb on - strand, within AO356_27495 at 6267.063 kb on + strand at 6267.063 kb on + strand at 6267.064 kb on - strand at 6267.064 kb on - strand at 6267.064 kb on - strand at 6267.065 kb on + strand at 6267.065 kb on + strand at 6267.065 kb on + strand at 6267.065 kb on + strand at 6267.065 kb on + strand at 6267.065 kb on + strand at 6267.065 kb on + strand at 6267.065 kb on + strand at 6267.065 kb on + strand at 6267.065 kb on + strand at 6267.066 kb on - strand at 6267.066 kb on - strand at 6267.066 kb on - strand at 6267.066 kb on - strand at 6267.066 kb on - strand at 6267.066 kb on - strand at 6267.066 kb on - strand at 6267.066 kb on - strand at 6267.066 kb on - strand at 6267.066 kb on - strand at 6267.066 kb on - strand at 6267.066 kb on - strand at 6267.105 kb on + strand at 6267.148 kb on + strand at 6267.267 kb on + strand at 6267.268 kb on - strand at 6267.268 kb on - strand at 6267.268 kb on - strand at 6267.268 kb on - strand at 6267.345 kb on - strand at 6267.360 kb on - strand at 6267.360 kb on - strand at 6267.361 kb on + strand at 6267.362 kb on - strand at 6267.362 kb on - strand at 6267.362 kb on - strand at 6267.362 kb on - strand at 6267.362 kb on - strand at 6267.366 kb on + strand at 6267.366 kb on + strand at 6267.366 kb on + strand at 6267.367 kb on - strand at 6267.367 kb on - strand at 6267.367 kb on - strand at 6267.367 kb on - strand at 6267.386 kb on + strand at 6267.846 kb on - strand, within AO356_27500 at 6267.890 kb on + strand, within AO356_27500 at 6267.890 kb on + strand, within AO356_27500 at 6267.891 kb on - strand, within AO356_27500 at 6267.962 kb on + strand, within AO356_27500 at 6268.055 kb on + strand, within AO356_27500 at 6268.055 kb on + strand, within AO356_27500 at 6268.055 kb on + strand, within AO356_27500 at 6268.085 kb on + strand, within AO356_27500 at 6268.085 kb on + strand, within AO356_27500 at 6268.086 kb on - strand, within AO356_27500 at 6268.086 kb on - strand, within AO356_27500 at 6268.086 kb on - strand, within AO356_27500 at 6268.086 kb on - strand, within AO356_27500 at 6268.086 kb on - strand, within AO356_27500 at 6268.134 kb on - strand, within AO356_27500 at 6268.134 kb on - strand, within AO356_27500 at 6268.296 kb on - strand, within AO356_27500 at 6268.405 kb on + strand, within AO356_27500 at 6268.405 kb on + strand, within AO356_27500 at 6268.406 kb on - strand, within AO356_27500 at 6268.460 kb on + strand, within AO356_27500 at 6268.460 kb on + strand, within AO356_27500 at 6268.553 kb on + strand, within AO356_27500 at 6268.553 kb on + strand, within AO356_27500 at 6268.554 kb on - strand, within AO356_27500 at 6268.596 kb on - strand, within AO356_27500 at 6268.616 kb on - strand, within AO356_27500 at 6268.616 kb on - strand, within AO356_27500 at 6268.798 kb on + strand at 6268.798 kb on + strand at 6268.798 kb on + strand at 6268.798 kb on + strand at 6268.799 kb on - strand at 6268.821 kb on - strand at 6268.825 kb on + strand at 6268.825 kb on + strand at 6268.825 kb on + strand at 6268.826 kb on - strand at 6268.826 kb on - strand at 6268.842 kb on - strand at 6268.914 kb on + strand at 6269.001 kb on + strand at 6269.061 kb on + strand at 6269.061 kb on + strand at 6269.290 kb on - strand, within AO356_27505 at 6269.290 kb on - strand, within AO356_27505 at 6269.320 kb on - strand, within AO356_27505 at 6269.523 kb on + strand, within AO356_27505 at 6269.523 kb on + strand, within AO356_27505 at 6269.524 kb on - strand, within AO356_27505
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs remove 6,266,368 - -1.0 6,266,528 + AO356_27495 0.23 -0.2 6,266,529 - AO356_27495 0.23 +0.3 6,266,761 - AO356_27495 0.53 +0.4 6,266,761 - AO356_27495 0.53 +0.1 6,266,806 + AO356_27495 0.58 -0.6 6,266,935 - AO356_27495 0.75 -0.2 6,267,046 + AO356_27495 0.89 +0.5 6,267,047 - AO356_27495 0.89 +0.1 6,267,063 + -0.3 6,267,063 + -0.0 6,267,064 - +0.1 6,267,064 - +0.9 6,267,064 - -0.1 6,267,065 + -0.5 6,267,065 + -0.3 6,267,065 + +0.0 6,267,065 + +0.7 6,267,065 + +0.5 6,267,065 + -0.5 6,267,065 + +0.8 6,267,065 + -1.3 6,267,065 + +0.4 6,267,065 + -0.7 6,267,066 - -0.5 6,267,066 - -0.1 6,267,066 - +0.3 6,267,066 - +0.1 6,267,066 - -0.4 6,267,066 - -0.1 6,267,066 - +0.6 6,267,066 - -0.1 6,267,066 - -0.3 6,267,066 - +0.1 6,267,066 - +0.8 6,267,066 - -1.1 6,267,105 + +0.9 6,267,148 + +0.3 6,267,267 + +0.8 6,267,268 - +0.6 6,267,268 - +1.1 6,267,268 - -0.8 6,267,268 - -1.4 6,267,345 - -1.9 6,267,360 - -0.0 6,267,360 - +0.8 6,267,361 + -0.2 6,267,362 - +0.1 6,267,362 - -1.1 6,267,362 - +0.3 6,267,362 - +0.7 6,267,362 - +0.2 6,267,366 + -0.1 6,267,366 + -0.6 6,267,366 + -0.0 6,267,367 - +0.8 6,267,367 - +0.8 6,267,367 - +0.7 6,267,367 - +0.8 6,267,386 + +0.5 6,267,846 - AO356_27500 0.34 -0.1 6,267,890 + AO356_27500 0.37 -0.7 6,267,890 + AO356_27500 0.37 +1.3 6,267,891 - AO356_27500 0.37 +0.3 6,267,962 + AO356_27500 0.42 +0.3 6,268,055 + AO356_27500 0.48 -0.7 6,268,055 + AO356_27500 0.48 -0.4 6,268,055 + AO356_27500 0.48 -0.4 6,268,085 + AO356_27500 0.50 -0.0 6,268,085 + AO356_27500 0.50 +0.3 6,268,086 - AO356_27500 0.50 +0.3 6,268,086 - AO356_27500 0.50 -0.4 6,268,086 - AO356_27500 0.50 +0.6 6,268,086 - AO356_27500 0.50 -0.2 6,268,086 - AO356_27500 0.50 +0.1 6,268,134 - AO356_27500 0.54 -0.6 6,268,134 - AO356_27500 0.54 +1.2 6,268,296 - AO356_27500 0.65 -0.5 6,268,405 + AO356_27500 0.72 +2.2 6,268,405 + AO356_27500 0.72 -0.1 6,268,406 - AO356_27500 0.72 +1.0 6,268,460 + AO356_27500 0.76 +0.1 6,268,460 + AO356_27500 0.76 +0.7 6,268,553 + AO356_27500 0.82 -0.1 6,268,553 + AO356_27500 0.82 -0.5 6,268,554 - AO356_27500 0.83 +0.8 6,268,596 - AO356_27500 0.85 +0.3 6,268,616 - AO356_27500 0.87 -1.1 6,268,616 - AO356_27500 0.87 +0.1 6,268,798 + +0.4 6,268,798 + +0.1 6,268,798 + +0.4 6,268,798 + +0.0 6,268,799 - -0.4 6,268,821 - +1.3 6,268,825 + +0.0 6,268,825 + +0.3 6,268,825 + -1.8 6,268,826 - +0.1 6,268,826 - +0.1 6,268,842 - +0.2 6,268,914 + +0.4 6,269,001 + -0.4 6,269,061 + +0.7 6,269,061 + +0.8 6,269,290 - AO356_27505 0.39 -0.9 6,269,290 - AO356_27505 0.39 +0.6 6,269,320 - AO356_27505 0.43 +1.2 6,269,523 + AO356_27505 0.71 -0.8 6,269,523 + AO356_27505 0.71 +0.4 6,269,524 - AO356_27505 0.71 -0.8
Or see this region's nucleotide sequence