Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27500

Experiment: 4C survival; 1152 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27495 and AO356_27500 are separated by 222 nucleotidesAO356_27500 and AO356_27505 are separated by 193 nucleotidesAO356_27505 and AO356_27510 are separated by 58 nucleotides AO356_27495: AO356_27495 - short-chain dehydrogenase, at 6,266,344 to 6,267,135 _27495 AO356_27500: AO356_27500 - amino acid permease, at 6,267,358 to 6,268,806 _27500 AO356_27505: AO356_27505 - transcriptional regulator, at 6,269,000 to 6,269,740 _27505 AO356_27510: AO356_27510 - AraC family transcriptional regulator, at 6,269,799 to 6,270,767 _27510 Position (kb) 6267 6268 6269Strain fitness (log2 ratio) -2 -1 0 1 2at 6266.368 kb on - strandat 6266.528 kb on + strand, within AO356_27495at 6266.529 kb on - strand, within AO356_27495at 6266.761 kb on - strand, within AO356_27495at 6266.761 kb on - strand, within AO356_27495at 6266.806 kb on + strand, within AO356_27495at 6266.935 kb on - strand, within AO356_27495at 6267.046 kb on + strand, within AO356_27495at 6267.047 kb on - strand, within AO356_27495at 6267.063 kb on + strandat 6267.063 kb on + strandat 6267.064 kb on - strandat 6267.064 kb on - strandat 6267.064 kb on - strandat 6267.065 kb on + strandat 6267.065 kb on + strandat 6267.065 kb on + strandat 6267.065 kb on + strandat 6267.065 kb on + strandat 6267.065 kb on + strandat 6267.065 kb on + strandat 6267.065 kb on + strandat 6267.065 kb on + strandat 6267.065 kb on + strandat 6267.066 kb on - strandat 6267.066 kb on - strandat 6267.066 kb on - strandat 6267.066 kb on - strandat 6267.066 kb on - strandat 6267.066 kb on - strandat 6267.066 kb on - strandat 6267.066 kb on - strandat 6267.066 kb on - strandat 6267.066 kb on - strandat 6267.066 kb on - strandat 6267.066 kb on - strandat 6267.105 kb on + strandat 6267.148 kb on + strandat 6267.267 kb on + strandat 6267.268 kb on - strandat 6267.268 kb on - strandat 6267.268 kb on - strandat 6267.268 kb on - strandat 6267.345 kb on - strandat 6267.360 kb on - strandat 6267.360 kb on - strandat 6267.361 kb on + strandat 6267.362 kb on - strandat 6267.362 kb on - strandat 6267.362 kb on - strandat 6267.362 kb on - strandat 6267.362 kb on - strandat 6267.366 kb on + strandat 6267.366 kb on + strandat 6267.366 kb on + strandat 6267.367 kb on - strandat 6267.367 kb on - strandat 6267.367 kb on - strandat 6267.367 kb on - strandat 6267.386 kb on + strandat 6267.846 kb on - strand, within AO356_27500at 6267.890 kb on + strand, within AO356_27500at 6267.890 kb on + strand, within AO356_27500at 6267.891 kb on - strand, within AO356_27500at 6267.962 kb on + strand, within AO356_27500at 6268.055 kb on + strand, within AO356_27500at 6268.055 kb on + strand, within AO356_27500at 6268.055 kb on + strand, within AO356_27500at 6268.085 kb on + strand, within AO356_27500at 6268.085 kb on + strand, within AO356_27500at 6268.086 kb on - strand, within AO356_27500at 6268.086 kb on - strand, within AO356_27500at 6268.086 kb on - strand, within AO356_27500at 6268.086 kb on - strand, within AO356_27500at 6268.086 kb on - strand, within AO356_27500at 6268.134 kb on - strand, within AO356_27500at 6268.134 kb on - strand, within AO356_27500at 6268.296 kb on - strand, within AO356_27500at 6268.405 kb on + strand, within AO356_27500at 6268.405 kb on + strand, within AO356_27500at 6268.406 kb on - strand, within AO356_27500at 6268.460 kb on + strand, within AO356_27500at 6268.460 kb on + strand, within AO356_27500at 6268.553 kb on + strand, within AO356_27500at 6268.553 kb on + strand, within AO356_27500at 6268.554 kb on - strand, within AO356_27500at 6268.596 kb on - strand, within AO356_27500at 6268.616 kb on - strand, within AO356_27500at 6268.616 kb on - strand, within AO356_27500at 6268.798 kb on + strandat 6268.798 kb on + strandat 6268.798 kb on + strandat 6268.798 kb on + strandat 6268.799 kb on - strandat 6268.821 kb on - strandat 6268.825 kb on + strandat 6268.825 kb on + strandat 6268.825 kb on + strandat 6268.826 kb on - strandat 6268.826 kb on - strandat 6268.842 kb on - strandat 6268.914 kb on + strandat 6269.001 kb on + strandat 6269.061 kb on + strandat 6269.061 kb on + strandat 6269.290 kb on - strand, within AO356_27505at 6269.290 kb on - strand, within AO356_27505at 6269.320 kb on - strand, within AO356_27505at 6269.523 kb on + strand, within AO356_27505at 6269.523 kb on + strand, within AO356_27505at 6269.524 kb on - strand, within AO356_27505

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs
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6,266,368 - -1.0
6,266,528 + AO356_27495 0.23 -0.2
6,266,529 - AO356_27495 0.23 +0.3
6,266,761 - AO356_27495 0.53 +0.4
6,266,761 - AO356_27495 0.53 +0.1
6,266,806 + AO356_27495 0.58 -0.6
6,266,935 - AO356_27495 0.75 -0.2
6,267,046 + AO356_27495 0.89 +0.5
6,267,047 - AO356_27495 0.89 +0.1
6,267,063 + -0.3
6,267,063 + -0.0
6,267,064 - +0.1
6,267,064 - +0.9
6,267,064 - -0.1
6,267,065 + -0.5
6,267,065 + -0.3
6,267,065 + +0.0
6,267,065 + +0.7
6,267,065 + +0.5
6,267,065 + -0.5
6,267,065 + +0.8
6,267,065 + -1.3
6,267,065 + +0.4
6,267,065 + -0.7
6,267,066 - -0.5
6,267,066 - -0.1
6,267,066 - +0.3
6,267,066 - +0.1
6,267,066 - -0.4
6,267,066 - -0.1
6,267,066 - +0.6
6,267,066 - -0.1
6,267,066 - -0.3
6,267,066 - +0.1
6,267,066 - +0.8
6,267,066 - -1.1
6,267,105 + +0.9
6,267,148 + +0.3
6,267,267 + +0.8
6,267,268 - +0.6
6,267,268 - +1.1
6,267,268 - -0.8
6,267,268 - -1.4
6,267,345 - -1.9
6,267,360 - -0.0
6,267,360 - +0.8
6,267,361 + -0.2
6,267,362 - +0.1
6,267,362 - -1.1
6,267,362 - +0.3
6,267,362 - +0.7
6,267,362 - +0.2
6,267,366 + -0.1
6,267,366 + -0.6
6,267,366 + -0.0
6,267,367 - +0.8
6,267,367 - +0.8
6,267,367 - +0.7
6,267,367 - +0.8
6,267,386 + +0.5
6,267,846 - AO356_27500 0.34 -0.1
6,267,890 + AO356_27500 0.37 -0.7
6,267,890 + AO356_27500 0.37 +1.3
6,267,891 - AO356_27500 0.37 +0.3
6,267,962 + AO356_27500 0.42 +0.3
6,268,055 + AO356_27500 0.48 -0.7
6,268,055 + AO356_27500 0.48 -0.4
6,268,055 + AO356_27500 0.48 -0.4
6,268,085 + AO356_27500 0.50 -0.0
6,268,085 + AO356_27500 0.50 +0.3
6,268,086 - AO356_27500 0.50 +0.3
6,268,086 - AO356_27500 0.50 -0.4
6,268,086 - AO356_27500 0.50 +0.6
6,268,086 - AO356_27500 0.50 -0.2
6,268,086 - AO356_27500 0.50 +0.1
6,268,134 - AO356_27500 0.54 -0.6
6,268,134 - AO356_27500 0.54 +1.2
6,268,296 - AO356_27500 0.65 -0.5
6,268,405 + AO356_27500 0.72 +2.2
6,268,405 + AO356_27500 0.72 -0.1
6,268,406 - AO356_27500 0.72 +1.0
6,268,460 + AO356_27500 0.76 +0.1
6,268,460 + AO356_27500 0.76 +0.7
6,268,553 + AO356_27500 0.82 -0.1
6,268,553 + AO356_27500 0.82 -0.5
6,268,554 - AO356_27500 0.83 +0.8
6,268,596 - AO356_27500 0.85 +0.3
6,268,616 - AO356_27500 0.87 -1.1
6,268,616 - AO356_27500 0.87 +0.1
6,268,798 + +0.4
6,268,798 + +0.1
6,268,798 + +0.4
6,268,798 + +0.0
6,268,799 - -0.4
6,268,821 - +1.3
6,268,825 + +0.0
6,268,825 + +0.3
6,268,825 + -1.8
6,268,826 - +0.1
6,268,826 - +0.1
6,268,842 - +0.2
6,268,914 + +0.4
6,269,001 + -0.4
6,269,061 + +0.7
6,269,061 + +0.8
6,269,290 - AO356_27505 0.39 -0.9
6,269,290 - AO356_27505 0.39 +0.6
6,269,320 - AO356_27505 0.43 +1.2
6,269,523 + AO356_27505 0.71 -0.8
6,269,523 + AO356_27505 0.71 +0.4
6,269,524 - AO356_27505 0.71 -0.8

Or see this region's nucleotide sequence