Experiment: 4C survival; 1152 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27445 and AO356_27450 are separated by 288 nucleotides AO356_27450 and AO356_27455 are separated by 120 nucleotides
AO356_27445: AO356_27445 - IclR family transcriptional regulator, at 6,253,521 to 6,254,327
_27445
AO356_27450: AO356_27450 - fumarylacetoacetate hydrolase, at 6,254,616 to 6,255,794
_27450
AO356_27455: AO356_27455 - LysR family transcriptional regulator, at 6,255,915 to 6,256,901
_27455
Position (kb)
6254
6255
6256 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6253.919 kb on - strand, within AO356_27445 at 6253.952 kb on - strand, within AO356_27445 at 6253.956 kb on - strand, within AO356_27445 at 6253.956 kb on - strand, within AO356_27445 at 6253.956 kb on - strand, within AO356_27445 at 6254.098 kb on - strand, within AO356_27445 at 6254.098 kb on - strand, within AO356_27445 at 6254.098 kb on - strand, within AO356_27445 at 6254.098 kb on - strand, within AO356_27445 at 6254.098 kb on - strand, within AO356_27445 at 6254.098 kb on - strand, within AO356_27445 at 6254.510 kb on + strand at 6254.510 kb on + strand at 6254.614 kb on - strand at 6254.617 kb on + strand at 6254.618 kb on - strand at 6254.618 kb on - strand at 6254.618 kb on - strand at 6254.692 kb on + strand at 6254.692 kb on + strand at 6254.693 kb on - strand at 6254.756 kb on + strand, within AO356_27450 at 6254.756 kb on + strand, within AO356_27450 at 6254.756 kb on + strand, within AO356_27450 at 6254.757 kb on - strand, within AO356_27450 at 6254.762 kb on + strand, within AO356_27450 at 6254.984 kb on + strand, within AO356_27450 at 6254.985 kb on - strand, within AO356_27450 at 6254.985 kb on - strand, within AO356_27450 at 6255.290 kb on + strand, within AO356_27450 at 6255.290 kb on + strand, within AO356_27450 at 6255.290 kb on + strand, within AO356_27450 at 6255.291 kb on - strand, within AO356_27450 at 6255.291 kb on - strand, within AO356_27450 at 6255.291 kb on - strand, within AO356_27450 at 6255.574 kb on + strand, within AO356_27450 at 6255.833 kb on + strand at 6255.932 kb on + strand at 6255.933 kb on - strand at 6255.933 kb on - strand at 6255.986 kb on + strand at 6255.986 kb on + strand at 6255.986 kb on + strand at 6255.987 kb on - strand at 6255.987 kb on - strand at 6255.987 kb on - strand at 6255.987 kb on - strand at 6256.056 kb on - strand, within AO356_27455 at 6256.056 kb on - strand, within AO356_27455 at 6256.148 kb on - strand, within AO356_27455 at 6256.164 kb on - strand, within AO356_27455 at 6256.234 kb on + strand, within AO356_27455 at 6256.235 kb on - strand, within AO356_27455 at 6256.539 kb on + strand, within AO356_27455 at 6256.540 kb on - strand, within AO356_27455 at 6256.540 kb on - strand, within AO356_27455 at 6256.540 kb on - strand, within AO356_27455 at 6256.764 kb on + strand, within AO356_27455 at 6256.772 kb on + strand, within AO356_27455 at 6256.773 kb on - strand, within AO356_27455
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs remove 6,253,919 - AO356_27445 0.49 +0.0 6,253,952 - AO356_27445 0.53 -0.2 6,253,956 - AO356_27445 0.54 +0.1 6,253,956 - AO356_27445 0.54 +0.5 6,253,956 - AO356_27445 0.54 +1.0 6,254,098 - AO356_27445 0.71 +0.2 6,254,098 - AO356_27445 0.71 -0.1 6,254,098 - AO356_27445 0.71 +0.4 6,254,098 - AO356_27445 0.71 -0.9 6,254,098 - AO356_27445 0.71 -1.1 6,254,098 - AO356_27445 0.71 -0.3 6,254,510 + -0.1 6,254,510 + +0.5 6,254,614 - +0.8 6,254,617 + +0.1 6,254,618 - +0.0 6,254,618 - +0.9 6,254,618 - +1.1 6,254,692 + +0.2 6,254,692 + -0.6 6,254,693 - -0.2 6,254,756 + AO356_27450 0.12 -2.3 6,254,756 + AO356_27450 0.12 +0.3 6,254,756 + AO356_27450 0.12 +0.4 6,254,757 - AO356_27450 0.12 +0.5 6,254,762 + AO356_27450 0.12 -0.9 6,254,984 + AO356_27450 0.31 -1.7 6,254,985 - AO356_27450 0.31 -0.4 6,254,985 - AO356_27450 0.31 +0.6 6,255,290 + AO356_27450 0.57 -1.1 6,255,290 + AO356_27450 0.57 +1.4 6,255,290 + AO356_27450 0.57 +0.1 6,255,291 - AO356_27450 0.57 -0.2 6,255,291 - AO356_27450 0.57 -0.2 6,255,291 - AO356_27450 0.57 -1.1 6,255,574 + AO356_27450 0.81 -0.3 6,255,833 + -0.9 6,255,932 + +0.1 6,255,933 - -0.5 6,255,933 - -1.1 6,255,986 + +2.5 6,255,986 + -0.0 6,255,986 + +0.4 6,255,987 - +0.4 6,255,987 - -0.1 6,255,987 - -0.2 6,255,987 - +0.4 6,256,056 - AO356_27455 0.14 +0.8 6,256,056 - AO356_27455 0.14 +0.6 6,256,148 - AO356_27455 0.24 +0.7 6,256,164 - AO356_27455 0.25 -0.4 6,256,234 + AO356_27455 0.32 -0.1 6,256,235 - AO356_27455 0.32 -1.8 6,256,539 + AO356_27455 0.63 +0.4 6,256,540 - AO356_27455 0.63 -1.0 6,256,540 - AO356_27455 0.63 +0.6 6,256,540 - AO356_27455 0.63 +0.7 6,256,764 + AO356_27455 0.86 +0.9 6,256,772 + AO356_27455 0.87 -1.3 6,256,773 - AO356_27455 0.87 -0.2
Or see this region's nucleotide sequence