Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27265

Experiment: 4C survival; 1152 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27260 and AO356_27265 overlap by 4 nucleotidesAO356_27265 and AO356_27270 are separated by 95 nucleotides AO356_27260: AO356_27260 - myo-inositol 2-dehydrogenase, at 6,213,767 to 6,214,795 _27260 AO356_27265: AO356_27265 - hypothetical protein, at 6,214,792 to 6,215,751 _27265 AO356_27270: AO356_27270 - MFS transporter, at 6,215,847 to 6,217,265 _27270 Position (kb) 6214 6215 6216Strain fitness (log2 ratio) -2 -1 0 1 2at 6213.898 kb on - strand, within AO356_27260at 6214.161 kb on - strand, within AO356_27260at 6214.198 kb on - strand, within AO356_27260at 6214.198 kb on - strand, within AO356_27260at 6214.198 kb on - strand, within AO356_27260at 6214.236 kb on + strand, within AO356_27260at 6214.236 kb on + strand, within AO356_27260at 6214.237 kb on - strand, within AO356_27260at 6214.237 kb on - strand, within AO356_27260at 6214.237 kb on - strand, within AO356_27260at 6214.328 kb on + strand, within AO356_27260at 6214.328 kb on + strand, within AO356_27260at 6214.328 kb on + strand, within AO356_27260at 6214.329 kb on - strand, within AO356_27260at 6214.367 kb on - strand, within AO356_27260at 6214.367 kb on - strand, within AO356_27260at 6214.518 kb on + strand, within AO356_27260at 6214.519 kb on - strand, within AO356_27260at 6214.519 kb on - strand, within AO356_27260at 6214.519 kb on - strand, within AO356_27260at 6214.519 kb on - strand, within AO356_27260at 6214.559 kb on + strand, within AO356_27260at 6214.560 kb on - strand, within AO356_27260at 6214.595 kb on + strand, within AO356_27260at 6214.595 kb on + strand, within AO356_27260at 6214.639 kb on + strand, within AO356_27260at 6214.639 kb on + strand, within AO356_27260at 6214.640 kb on - strand, within AO356_27260at 6214.786 kb on + strandat 6214.787 kb on - strandat 6215.243 kb on + strand, within AO356_27265at 6215.243 kb on + strand, within AO356_27265at 6215.444 kb on - strand, within AO356_27265at 6215.444 kb on - strand, within AO356_27265at 6215.463 kb on + strand, within AO356_27265at 6215.464 kb on - strand, within AO356_27265at 6215.464 kb on - strand, within AO356_27265at 6215.526 kb on + strand, within AO356_27265at 6215.526 kb on + strand, within AO356_27265at 6215.548 kb on + strand, within AO356_27265at 6215.620 kb on + strand, within AO356_27265at 6215.657 kb on + strandat 6215.700 kb on - strandat 6215.700 kb on - strandat 6215.700 kb on - strandat 6215.776 kb on + strandat 6215.776 kb on + strandat 6215.776 kb on + strandat 6215.777 kb on - strandat 6215.855 kb on + strandat 6215.855 kb on + strandat 6215.856 kb on - strandat 6215.925 kb on + strandat 6215.968 kb on + strandat 6216.010 kb on - strand, within AO356_27270at 6216.468 kb on + strand, within AO356_27270at 6216.469 kb on - strand, within AO356_27270at 6216.469 kb on - strand, within AO356_27270at 6216.529 kb on + strand, within AO356_27270at 6216.542 kb on - strand, within AO356_27270at 6216.552 kb on + strand, within AO356_27270at 6216.553 kb on - strand, within AO356_27270at 6216.556 kb on - strand, within AO356_27270at 6216.687 kb on - strand, within AO356_27270at 6216.687 kb on - strand, within AO356_27270at 6216.720 kb on + strand, within AO356_27270at 6216.721 kb on - strand, within AO356_27270at 6216.721 kb on - strand, within AO356_27270

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs
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6,213,898 - AO356_27260 0.13 +0.4
6,214,161 - AO356_27260 0.38 +0.0
6,214,198 - AO356_27260 0.42 +0.3
6,214,198 - AO356_27260 0.42 -0.8
6,214,198 - AO356_27260 0.42 +0.2
6,214,236 + AO356_27260 0.46 +1.0
6,214,236 + AO356_27260 0.46 -0.0
6,214,237 - AO356_27260 0.46 +1.1
6,214,237 - AO356_27260 0.46 -0.2
6,214,237 - AO356_27260 0.46 +0.4
6,214,328 + AO356_27260 0.55 -0.5
6,214,328 + AO356_27260 0.55 +0.1
6,214,328 + AO356_27260 0.55 -0.8
6,214,329 - AO356_27260 0.55 -0.2
6,214,367 - AO356_27260 0.58 +0.8
6,214,367 - AO356_27260 0.58 -1.0
6,214,518 + AO356_27260 0.73 -1.6
6,214,519 - AO356_27260 0.73 -1.4
6,214,519 - AO356_27260 0.73 +0.2
6,214,519 - AO356_27260 0.73 -0.2
6,214,519 - AO356_27260 0.73 +0.6
6,214,559 + AO356_27260 0.77 +0.0
6,214,560 - AO356_27260 0.77 -0.6
6,214,595 + AO356_27260 0.80 +0.9
6,214,595 + AO356_27260 0.80 -0.7
6,214,639 + AO356_27260 0.85 +0.2
6,214,639 + AO356_27260 0.85 -0.2
6,214,640 - AO356_27260 0.85 -0.8
6,214,786 + -0.1
6,214,787 - +0.6
6,215,243 + AO356_27265 0.47 -0.5
6,215,243 + AO356_27265 0.47 +0.6
6,215,444 - AO356_27265 0.68 +1.0
6,215,444 - AO356_27265 0.68 +1.0
6,215,463 + AO356_27265 0.70 +0.3
6,215,464 - AO356_27265 0.70 +1.3
6,215,464 - AO356_27265 0.70 -0.7
6,215,526 + AO356_27265 0.76 +0.7
6,215,526 + AO356_27265 0.76 +1.4
6,215,548 + AO356_27265 0.79 +0.3
6,215,620 + AO356_27265 0.86 -0.4
6,215,657 + +1.0
6,215,700 - -0.4
6,215,700 - -0.2
6,215,700 - +0.1
6,215,776 + -2.4
6,215,776 + -0.1
6,215,776 + +0.7
6,215,777 - +0.4
6,215,855 + -0.3
6,215,855 + -2.0
6,215,856 - -0.2
6,215,925 + +0.2
6,215,968 + -0.6
6,216,010 - AO356_27270 0.11 -0.1
6,216,468 + AO356_27270 0.44 +0.3
6,216,469 - AO356_27270 0.44 +2.0
6,216,469 - AO356_27270 0.44 +0.9
6,216,529 + AO356_27270 0.48 -0.9
6,216,542 - AO356_27270 0.49 +0.1
6,216,552 + AO356_27270 0.50 +0.5
6,216,553 - AO356_27270 0.50 -1.1
6,216,556 - AO356_27270 0.50 +1.9
6,216,687 - AO356_27270 0.59 +1.3
6,216,687 - AO356_27270 0.59 +0.4
6,216,720 + AO356_27270 0.62 -0.1
6,216,721 - AO356_27270 0.62 +0.3
6,216,721 - AO356_27270 0.62 -0.9

Or see this region's nucleotide sequence