Experiment: 4C survival; 1152 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27075 and AO356_27080 are separated by 677 nucleotides AO356_27080 and AO356_27085 are separated by 257 nucleotides
AO356_27075: AO356_27075 - hypothetical protein, at 6,172,815 to 6,174,305
_27075
AO356_27080: AO356_27080 - alcohol dehydrogenase, at 6,174,983 to 6,176,008
_27080
AO356_27085: AO356_27085 - LysR family transcriptional regulator, at 6,176,266 to 6,177,180
_27085
Position (kb)
6174
6175
6176
6177 Strain fitness (log2 ratio)
-2
-1
0
1 at 6174.106 kb on - strand, within AO356_27075 at 6174.106 kb on - strand, within AO356_27075 at 6174.106 kb on - strand, within AO356_27075 at 6174.109 kb on + strand, within AO356_27075 at 6174.109 kb on + strand, within AO356_27075 at 6174.109 kb on + strand, within AO356_27075 at 6174.109 kb on + strand, within AO356_27075 at 6174.109 kb on + strand, within AO356_27075 at 6174.109 kb on + strand, within AO356_27075 at 6174.110 kb on - strand, within AO356_27075 at 6174.110 kb on - strand, within AO356_27075 at 6174.110 kb on - strand, within AO356_27075 at 6174.110 kb on - strand, within AO356_27075 at 6174.110 kb on - strand, within AO356_27075 at 6174.110 kb on - strand, within AO356_27075 at 6174.170 kb on + strand at 6174.258 kb on + strand at 6174.269 kb on - strand at 6174.445 kb on - strand at 6174.449 kb on - strand at 6174.577 kb on - strand at 6174.596 kb on - strand at 6174.635 kb on + strand at 6174.784 kb on - strand at 6174.981 kb on + strand at 6174.981 kb on + strand at 6174.982 kb on - strand at 6176.034 kb on - strand at 6176.062 kb on - strand at 6176.085 kb on - strand at 6176.085 kb on - strand at 6176.088 kb on - strand at 6176.088 kb on - strand at 6176.146 kb on + strand at 6176.165 kb on + strand at 6176.166 kb on - strand at 6176.166 kb on - strand at 6176.274 kb on + strand at 6176.274 kb on + strand at 6176.275 kb on - strand at 6176.677 kb on + strand, within AO356_27085 at 6176.677 kb on + strand, within AO356_27085 at 6176.677 kb on + strand, within AO356_27085 at 6176.677 kb on + strand, within AO356_27085 at 6176.678 kb on - strand, within AO356_27085 at 6176.678 kb on - strand, within AO356_27085 at 6176.678 kb on - strand, within AO356_27085 at 6176.678 kb on - strand, within AO356_27085 at 6176.678 kb on - strand, within AO356_27085 at 6176.731 kb on + strand, within AO356_27085 at 6176.731 kb on + strand, within AO356_27085 at 6176.732 kb on - strand, within AO356_27085 at 6176.920 kb on - strand, within AO356_27085 at 6177.007 kb on + strand, within AO356_27085 at 6177.008 kb on - strand, within AO356_27085 at 6177.008 kb on - strand, within AO356_27085
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs remove 6,174,106 - AO356_27075 0.87 +0.1 6,174,106 - AO356_27075 0.87 -0.1 6,174,106 - AO356_27075 0.87 +1.1 6,174,109 + AO356_27075 0.87 +0.0 6,174,109 + AO356_27075 0.87 +0.6 6,174,109 + AO356_27075 0.87 -0.6 6,174,109 + AO356_27075 0.87 -0.2 6,174,109 + AO356_27075 0.87 +0.7 6,174,109 + AO356_27075 0.87 +0.7 6,174,110 - AO356_27075 0.87 +0.1 6,174,110 - AO356_27075 0.87 +0.6 6,174,110 - AO356_27075 0.87 -0.5 6,174,110 - AO356_27075 0.87 -0.1 6,174,110 - AO356_27075 0.87 -0.7 6,174,110 - AO356_27075 0.87 -0.5 6,174,170 + -0.3 6,174,258 + +0.3 6,174,269 - +0.6 6,174,445 - +0.3 6,174,449 - +0.5 6,174,577 - +0.2 6,174,596 - +1.5 6,174,635 + -0.6 6,174,784 - -0.6 6,174,981 + +0.5 6,174,981 + +0.8 6,174,982 - +0.3 6,176,034 - -0.8 6,176,062 - +0.7 6,176,085 - +0.2 6,176,085 - +0.5 6,176,088 - +0.2 6,176,088 - +0.1 6,176,146 + -1.2 6,176,165 + -0.8 6,176,166 - -0.1 6,176,166 - -1.9 6,176,274 + -1.8 6,176,274 + -0.3 6,176,275 - -0.4 6,176,677 + AO356_27085 0.45 +0.6 6,176,677 + AO356_27085 0.45 -0.4 6,176,677 + AO356_27085 0.45 +0.7 6,176,677 + AO356_27085 0.45 +0.5 6,176,678 - AO356_27085 0.45 +0.1 6,176,678 - AO356_27085 0.45 +0.9 6,176,678 - AO356_27085 0.45 +0.4 6,176,678 - AO356_27085 0.45 +0.3 6,176,678 - AO356_27085 0.45 +0.2 6,176,731 + AO356_27085 0.51 -0.3 6,176,731 + AO356_27085 0.51 +1.0 6,176,732 - AO356_27085 0.51 +0.6 6,176,920 - AO356_27085 0.71 +0.8 6,177,007 + AO356_27085 0.81 -1.7 6,177,008 - AO356_27085 0.81 +1.2 6,177,008 - AO356_27085 0.81 +0.1
Or see this region's nucleotide sequence