Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27080

Experiment: 4C survival; 1152 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27075 and AO356_27080 are separated by 677 nucleotidesAO356_27080 and AO356_27085 are separated by 257 nucleotides AO356_27075: AO356_27075 - hypothetical protein, at 6,172,815 to 6,174,305 _27075 AO356_27080: AO356_27080 - alcohol dehydrogenase, at 6,174,983 to 6,176,008 _27080 AO356_27085: AO356_27085 - LysR family transcriptional regulator, at 6,176,266 to 6,177,180 _27085 Position (kb) 6174 6175 6176 6177Strain fitness (log2 ratio) -2 -1 0 1at 6174.106 kb on - strand, within AO356_27075at 6174.106 kb on - strand, within AO356_27075at 6174.106 kb on - strand, within AO356_27075at 6174.109 kb on + strand, within AO356_27075at 6174.109 kb on + strand, within AO356_27075at 6174.109 kb on + strand, within AO356_27075at 6174.109 kb on + strand, within AO356_27075at 6174.109 kb on + strand, within AO356_27075at 6174.109 kb on + strand, within AO356_27075at 6174.110 kb on - strand, within AO356_27075at 6174.110 kb on - strand, within AO356_27075at 6174.110 kb on - strand, within AO356_27075at 6174.110 kb on - strand, within AO356_27075at 6174.110 kb on - strand, within AO356_27075at 6174.110 kb on - strand, within AO356_27075at 6174.170 kb on + strandat 6174.258 kb on + strandat 6174.269 kb on - strandat 6174.445 kb on - strandat 6174.449 kb on - strandat 6174.577 kb on - strandat 6174.596 kb on - strandat 6174.635 kb on + strandat 6174.784 kb on - strandat 6174.981 kb on + strandat 6174.981 kb on + strandat 6174.982 kb on - strandat 6176.034 kb on - strandat 6176.062 kb on - strandat 6176.085 kb on - strandat 6176.085 kb on - strandat 6176.088 kb on - strandat 6176.088 kb on - strandat 6176.146 kb on + strandat 6176.165 kb on + strandat 6176.166 kb on - strandat 6176.166 kb on - strandat 6176.274 kb on + strandat 6176.274 kb on + strandat 6176.275 kb on - strandat 6176.677 kb on + strand, within AO356_27085at 6176.677 kb on + strand, within AO356_27085at 6176.677 kb on + strand, within AO356_27085at 6176.677 kb on + strand, within AO356_27085at 6176.678 kb on - strand, within AO356_27085at 6176.678 kb on - strand, within AO356_27085at 6176.678 kb on - strand, within AO356_27085at 6176.678 kb on - strand, within AO356_27085at 6176.678 kb on - strand, within AO356_27085at 6176.731 kb on + strand, within AO356_27085at 6176.731 kb on + strand, within AO356_27085at 6176.732 kb on - strand, within AO356_27085at 6176.920 kb on - strand, within AO356_27085at 6177.007 kb on + strand, within AO356_27085at 6177.008 kb on - strand, within AO356_27085at 6177.008 kb on - strand, within AO356_27085

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs
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6,174,106 - AO356_27075 0.87 +0.1
6,174,106 - AO356_27075 0.87 -0.1
6,174,106 - AO356_27075 0.87 +1.1
6,174,109 + AO356_27075 0.87 +0.0
6,174,109 + AO356_27075 0.87 +0.6
6,174,109 + AO356_27075 0.87 -0.6
6,174,109 + AO356_27075 0.87 -0.2
6,174,109 + AO356_27075 0.87 +0.7
6,174,109 + AO356_27075 0.87 +0.7
6,174,110 - AO356_27075 0.87 +0.1
6,174,110 - AO356_27075 0.87 +0.6
6,174,110 - AO356_27075 0.87 -0.5
6,174,110 - AO356_27075 0.87 -0.1
6,174,110 - AO356_27075 0.87 -0.7
6,174,110 - AO356_27075 0.87 -0.5
6,174,170 + -0.3
6,174,258 + +0.3
6,174,269 - +0.6
6,174,445 - +0.3
6,174,449 - +0.5
6,174,577 - +0.2
6,174,596 - +1.5
6,174,635 + -0.6
6,174,784 - -0.6
6,174,981 + +0.5
6,174,981 + +0.8
6,174,982 - +0.3
6,176,034 - -0.8
6,176,062 - +0.7
6,176,085 - +0.2
6,176,085 - +0.5
6,176,088 - +0.2
6,176,088 - +0.1
6,176,146 + -1.2
6,176,165 + -0.8
6,176,166 - -0.1
6,176,166 - -1.9
6,176,274 + -1.8
6,176,274 + -0.3
6,176,275 - -0.4
6,176,677 + AO356_27085 0.45 +0.6
6,176,677 + AO356_27085 0.45 -0.4
6,176,677 + AO356_27085 0.45 +0.7
6,176,677 + AO356_27085 0.45 +0.5
6,176,678 - AO356_27085 0.45 +0.1
6,176,678 - AO356_27085 0.45 +0.9
6,176,678 - AO356_27085 0.45 +0.4
6,176,678 - AO356_27085 0.45 +0.3
6,176,678 - AO356_27085 0.45 +0.2
6,176,731 + AO356_27085 0.51 -0.3
6,176,731 + AO356_27085 0.51 +1.0
6,176,732 - AO356_27085 0.51 +0.6
6,176,920 - AO356_27085 0.71 +0.8
6,177,007 + AO356_27085 0.81 -1.7
6,177,008 - AO356_27085 0.81 +1.2
6,177,008 - AO356_27085 0.81 +0.1

Or see this region's nucleotide sequence