Experiment: 4C survival; 1152 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25405 and AO356_25410 are separated by 96 nucleotides AO356_25410 and AO356_25415 are separated by 211 nucleotides
AO356_25405: AO356_25405 - spermidine/putrescine ABC transporter substrate-binding protein, at 5,745,886 to 5,746,926
_25405
AO356_25410: AO356_25410 - LysR family transcriptional regulator, at 5,747,023 to 5,747,934
_25410
AO356_25415: AO356_25415 - pyridine nucleotide-disulfide oxidoreductase, at 5,748,146 to 5,749,348
_25415
Position (kb) 5747
5748 Strain fitness (log2 ratio) -1
0
1
2 at 5746.066 kb on + strand, within AO356_25405 at 5746.219 kb on + strand, within AO356_25405 at 5746.219 kb on + strand, within AO356_25405 at 5746.219 kb on + strand, within AO356_25405 at 5746.219 kb on + strand, within AO356_25405 at 5746.219 kb on + strand, within AO356_25405 at 5746.220 kb on - strand, within AO356_25405 at 5746.258 kb on + strand, within AO356_25405 at 5746.259 kb on - strand, within AO356_25405 at 5746.259 kb on - strand, within AO356_25405 at 5746.382 kb on - strand, within AO356_25405 at 5746.432 kb on + strand, within AO356_25405 at 5746.433 kb on - strand, within AO356_25405 at 5746.433 kb on - strand, within AO356_25405 at 5746.760 kb on - strand, within AO356_25405 at 5746.925 kb on - strand at 5746.979 kb on + strand at 5746.980 kb on - strand at 5746.980 kb on - strand at 5746.983 kb on + strand at 5746.983 kb on + strand at 5747.174 kb on + strand, within AO356_25410 at 5747.174 kb on + strand, within AO356_25410 at 5747.175 kb on - strand, within AO356_25410 at 5747.463 kb on + strand, within AO356_25410 at 5747.464 kb on - strand, within AO356_25410 at 5747.849 kb on + strand at 5747.924 kb on + strand at 5747.925 kb on - strand at 5747.965 kb on - strand at 5747.969 kb on + strand at 5747.969 kb on + strand at 5747.970 kb on - strand at 5747.970 kb on - strand at 5747.970 kb on - strand at 5747.970 kb on - strand at 5747.970 kb on - strand at 5747.970 kb on - strand at 5747.970 kb on - strand at 5748.333 kb on + strand, within AO356_25415 at 5748.333 kb on + strand, within AO356_25415 at 5748.333 kb on + strand, within AO356_25415 at 5748.334 kb on - strand, within AO356_25415 at 5748.334 kb on - strand, within AO356_25415 at 5748.334 kb on - strand, within AO356_25415 at 5748.349 kb on - strand, within AO356_25415 at 5748.441 kb on + strand, within AO356_25415 at 5748.441 kb on + strand, within AO356_25415 at 5748.442 kb on - strand, within AO356_25415 at 5748.492 kb on - strand, within AO356_25415 at 5748.492 kb on - strand, within AO356_25415 at 5748.626 kb on - strand, within AO356_25415 at 5748.928 kb on + strand, within AO356_25415
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs remove 5,746,066 + AO356_25405 0.17 +0.3 5,746,219 + AO356_25405 0.32 +0.6 5,746,219 + AO356_25405 0.32 +0.1 5,746,219 + AO356_25405 0.32 +1.8 5,746,219 + AO356_25405 0.32 +0.6 5,746,219 + AO356_25405 0.32 +1.0 5,746,220 - AO356_25405 0.32 +1.0 5,746,258 + AO356_25405 0.36 -1.3 5,746,259 - AO356_25405 0.36 -1.4 5,746,259 - AO356_25405 0.36 +0.0 5,746,382 - AO356_25405 0.48 +0.6 5,746,432 + AO356_25405 0.52 +0.9 5,746,433 - AO356_25405 0.53 +2.5 5,746,433 - AO356_25405 0.53 -1.2 5,746,760 - AO356_25405 0.84 -1.2 5,746,925 - +0.3 5,746,979 + -0.2 5,746,980 - +0.9 5,746,980 - -0.3 5,746,983 + -0.6 5,746,983 + -0.3 5,747,174 + AO356_25410 0.17 +0.6 5,747,174 + AO356_25410 0.17 -0.6 5,747,175 - AO356_25410 0.17 -0.4 5,747,463 + AO356_25410 0.48 +0.3 5,747,464 - AO356_25410 0.48 -1.0 5,747,849 + +0.5 5,747,924 + -0.3 5,747,925 - -1.1 5,747,965 - +0.1 5,747,969 + +0.3 5,747,969 + -0.2 5,747,970 - -0.9 5,747,970 - -0.1 5,747,970 - +0.2 5,747,970 - -1.0 5,747,970 - -0.1 5,747,970 - -0.1 5,747,970 - -0.7 5,748,333 + AO356_25415 0.16 +0.3 5,748,333 + AO356_25415 0.16 -0.8 5,748,333 + AO356_25415 0.16 +0.3 5,748,334 - AO356_25415 0.16 +0.2 5,748,334 - AO356_25415 0.16 -1.2 5,748,334 - AO356_25415 0.16 -0.3 5,748,349 - AO356_25415 0.17 +0.8 5,748,441 + AO356_25415 0.25 -0.3 5,748,441 + AO356_25415 0.25 +1.7 5,748,442 - AO356_25415 0.25 +0.7 5,748,492 - AO356_25415 0.29 +1.9 5,748,492 - AO356_25415 0.29 -0.1 5,748,626 - AO356_25415 0.40 -0.6 5,748,928 + AO356_25415 0.65 +0.1
Or see this region's nucleotide sequence